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Date: Wed, 22 Jan 2003 06:20:03 -0800 (PST)
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From: "Simon 'corecode' Schubert" <corecode@corecode.ath.cx>
Subject: Re: ports/47303: Update biology/p5-bioperl to latest release
Reply-To: "Simon 'corecode' Schubert" <corecode@corecode.ath.cx>
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The following reply was made to PR ports/47303; it has been noted by GNATS.

From: "Simon 'corecode' Schubert" <corecode@corecode.ath.cx>
To: Fernan Aguero <fernan@iib.unsam.edu.ar>
Cc: FreeBSD-gnats-submit@FreeBSD.org, freebsd-ports-bugs@FreeBSD.org
Subject: Re: ports/47303: Update biology/p5-bioperl to latest release
Date: Wed, 22 Jan 2003 15:10:20 +0100

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 Lately Fernan Aguero told:
 
 > diff -ruN p5-bioperl.new/Makefile p5-bioperl/Makefile
 > --- p5-bioperl.new/Makefile	Wed Jan 22 10:01:22 2003
 > +++ p5-bioperl/Makefile	Fri Jan 25 08:46:09 2002
 
 woo! reverse diff is hard to read, but here we go:
 
 [...]
 > -MASTER_SITES=		ftp://bioperl.org/pub/DIST/ \
 > -                 http://bioperl.org/DIST \
                                            ^ add /
 [...]
 > -DISTFILES=			${DISTNAME}${EXTRACT_SUFX}
 
 is that needed?
 
 [...]
 >  # These are all run-time dependencies, but listing them in ${BUILD_DEPENDS}
 >  # prevents a flood of build-time warnings.
 > -# 
 > -# Text::Shellwords does not appear to be in the ports tree 
 > -# and is required by Bio::Graphics:FeatureFile.pm
 > -#
 > -# DB_File is required to access Berkeley DB
 > -# by Bio::DB::Flat and Bio::SeqFeature::Collection
 > -# but is not in the ports tree
 > -# 
 > -# perhaps they're included with perl?
 > -# let me know if they are
 
 is this optional or mandatory? if so they need to be ported
 
 [...]
 > -.for doc in AUTHORS BUGS Changes DEPRECATED FAQ INSTALL LICENSE PLATFORMS README
 > -	${INSTALL_MAN} ${WRKSRC}/${doc} ${DOCSDIR}
 
 better use ${INSTALL_DATA}?
 
 cheers
   simon
 
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