From owner-freebsd-ports-bugs@FreeBSD.ORG Mon Mar 24 00:20:00 2014 Return-Path: Delivered-To: freebsd-ports-bugs@smarthost.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 9696E9B7 for ; Mon, 24 Mar 2014 00:20:00 +0000 (UTC) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:1900:2254:206c::16:87]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by mx1.freebsd.org (Postfix) with ESMTPS id 71A49829 for ; Mon, 24 Mar 2014 00:20:00 +0000 (UTC) Received: from freefall.freebsd.org (localhost [127.0.0.1]) by freefall.freebsd.org (8.14.8/8.14.8) with ESMTP id s2O0K06e094888 for ; Mon, 24 Mar 2014 00:20:00 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.8/8.14.8/Submit) id s2O0K0QZ094887; Mon, 24 Mar 2014 00:20:00 GMT (envelope-from gnats) Resent-Date: Mon, 24 Mar 2014 00:20:00 GMT Resent-Message-Id: <201403240020.s2O0K0QZ094887@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Johannes Jost Meixner Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 0C126872 for ; Mon, 24 Mar 2014 00:19:25 +0000 (UTC) Received: from dd16522.kasserver.com (dd16522.kasserver.com [85.13.137.124]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by mx1.freebsd.org (Postfix) with ESMTPS id A845D81D for ; Mon, 24 Mar 2014 00:19:24 +0000 (UTC) Received: from mx12.chaot.net (82.131.59.205.cable.starman.ee [82.131.59.205]) by dd16522.kasserver.com (Postfix) with ESMTPSA id EBD508D4014; Mon, 24 Mar 2014 01:19:22 +0100 (CET) Received: from localhost (1003@localhost [local]); by localhost (OpenSMTPD) with ESMTPA id 6455abd2; Mon, 24 Mar 2014 02:19:22 +0200 (EET) Message-Id: <2351988852760774032.enqueue@mx12.chaot.net> Date: Mon, 24 Mar 2014 02:19:22 +0200 (EET) From: Johannes Jost Meixner To: FreeBSD-gnats-submit@freebsd.org X-Send-Pr-Version: 3.113 Subject: ports/187884: [PATCH] science/minc: update to 2.2.00 Cc: xmj@chaot.net X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.17 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 24 Mar 2014 00:20:00 -0000 >Number: 187884 >Category: ports >Synopsis: [PATCH] science/minc: update to 2.2.00 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: update >Submitter-Id: current-users >Arrival-Date: Mon Mar 24 00:20:00 UTC 2014 >Closed-Date: >Last-Modified: >Originator: Johannes Jost Meixner >Release: FreeBSD 11.0-CURRENT amd64 >Organization: Goldener Grund OUe >Environment: System: FreeBSD mx12.chaot.net 11.0-CURRENT FreeBSD 11.0-CURRENT #6: Wed Mar 19 11:02:48 EET 2014 >Description: - Update to 2.2.00 Generated with FreeBSD Port Tools 1.00.2014.03.22 (mode: update, diff: SVN) >How-To-Repeat: >Fix: --- minc-2.2.00.patch begins here --- Index: Makefile =================================================================== --- Makefile (revision 348913) +++ Makefile (working copy) @@ -11,28 +11,31 @@ # Of course, the netcdf port must be installed first. PORTNAME= minc -PORTVERSION= 2.0.18 -PORTEPOCH= 1 +PORTVERSION= 2.2.00 CATEGORIES= science biology -MASTER_SITES= http://packages.bic.mni.mcgill.ca/tgz/ \ - http://www.nitrc.org/frs/download.php/801/ -PKGNAMESUFFIX= 2 +MASTER_SITES= http://packages.bic.mni.mcgill.ca/tgz/ MAINTAINER= ports@FreeBSD.org COMMENT= Medical Imaging NetCDF -LICENSE= BSD +LICENSE= MINC +LICENSE_NAME= MINC License +LICENSE_FILE= ${WRKSRC}/COPYING +LICENSE_PERMS= dist-mirror pkg-mirror auto-accept -LIB_DEPENDS= libnetcdf.so.4:${PORTSDIR}/science/netcdf \ - libhdf5.so.0:${PORTSDIR}/science/hdf5 +LIB_DEPENDS= libnetcdf.so:${PORTSDIR}/science/netcdf \ + libhdf5.so:${PORTSDIR}/science/hdf5-18 -USE_AUTOTOOLS= libtool USE_LDCONFIG= yes -CPPFLAGS+= ${PTHREAD_CFLAGS} -I${LOCALBASE}/include -DH5_USE_16_API -LDFLAGS+= -L${LOCALBASE}/lib ${PTHREAD_LIBS} -CONFIGURE_ARGS= --enable-shared=yes --enable-static=yes +USES= cmake:outsource bison:build shebangfix +CPPFLAGS+= ${PTHREAD_CFLAGS} +LDFLAGS+= ${PTHREAD_LIBS} +CMAKE_ARGS= -DMINC2_BUILD_SHARED_LIBS:BOOL=YES CONFLICTS= minc-1* zh-tk-[0-9]* -LATEST_LINK= minc2 +LATEST_LINK?= minc2 +post-install: + ${CAT} ${PKGMESSAGE} + .include Index: distinfo =================================================================== --- distinfo (revision 348913) +++ distinfo (working copy) @@ -1,2 +1,2 @@ -SHA256 (minc-2.0.18.tar.gz) = 674cc89c43edfdb1957251c0124ea83252740c667cf3c4d9fc6183dcdb10f3e5 -SIZE (minc-2.0.18.tar.gz) = 1628038 +SHA256 (minc-2.2.00.tar.gz) = e689d3612db6241125e3155d5a5c109d4da6f4bd774cc00a7e6729f2a790a174 +SIZE (minc-2.2.00.tar.gz) = 1665189 Index: files/patch-conversion_minctoecat_machine_indep.c =================================================================== --- files/patch-conversion_minctoecat_machine_indep.c (revision 348913) +++ files/patch-conversion_minctoecat_machine_indep.c (working copy) @@ -1,20 +0,0 @@ ---- conversion/minctoecat/machine_indep.c.orig 2007-03-29 07:08:46.000000000 +0200 -+++ conversion/minctoecat/machine_indep.c 2014-01-28 22:55:57.000000000 +0100 -@@ -61,7 +61,7 @@ - } - - #if defined(__alpha) || defined(_WIN32) /* LITTLE_ENDIAN : alpha, intel */ --ftovaxf(f, bufr) -+void ftovaxf(f, bufr) - float f; - unsigned short *bufr; - { -@@ -84,7 +84,7 @@ - bufr[1] = ret >>16; - } - #else /* BIG ENDIAN : sun hp sgi*/ --ftovaxf(orig,number) -+void ftovaxf(orig,number) - unsigned short number[2]; - float orig; - { Index: pkg-plist =================================================================== --- pkg-plist (revision 348913) +++ pkg-plist (working copy) @@ -3,6 +3,7 @@ bin/invert_raw_image bin/minc_modify_header bin/mincaverage +bin/mincblob bin/minccalc bin/mincconcat bin/mincconvert @@ -20,9 +21,11 @@ bin/mincmakescalar bin/mincmakevector bin/mincmath +bin/mincmorph bin/mincpik bin/mincresample bin/mincreshape +bin/mincsample bin/mincstats bin/minctoecat bin/minctoraw @@ -33,11 +36,9 @@ bin/rawtominc bin/transformtags bin/upet2mnc -bin/vff2mnc bin/voxeltoworld bin/worldtovoxel bin/xfmconcat -bin/xfmflip bin/xfminvert include/ParseArgv.h include/minc.h @@ -64,52 +65,12 @@ include/volume_io/volume.h include/volume_io/volume_cache.h include/voxel_loop.h -lib/libminc2.a -lib/libminc2.la +lib/MINC2Config.cmake +lib/UseMINC2.cmake lib/libminc2.so lib/libminc2.so.2 -lib/libvolume_io2.a -lib/libvolume_io2.la +lib/libminc2.so.2.2.00 lib/libvolume_io2.so lib/libvolume_io2.so.2 -man/man1/dcm2mnc.1.gz -man/man1/ecattominc.1.gz -man/man1/invert_raw_image.1.gz -man/man1/minc_modify_header.1.gz -man/man1/mincaverage.1.gz -man/man1/minccalc.1.gz -man/man1/mincconcat.1.gz -man/man1/mincconvert.1.gz -man/man1/minccopy.1.gz -man/man1/mincdiff.1.gz -man/man1/mincedit.1.gz -man/man1/mincexpand.1.gz -man/man1/mincextract.1.gz -man/man1/mincgen.1.gz -man/man1/mincheader.1.gz -man/man1/minchistory.1.gz -man/man1/mincinfo.1.gz -man/man1/minclookup.1.gz -man/man1/mincmakescalar.1.gz -man/man1/mincmakevector.1.gz -man/man1/mincmath.1.gz -man/man1/mincpik.1.gz -man/man1/mincresample.1.gz -man/man1/mincreshape.1.gz -man/man1/mincstats.1.gz -man/man1/minctoecat.1.gz -man/man1/minctoraw.1.gz -man/man1/mincview.1.gz -man/man1/mincwindow.1.gz -man/man1/mnc2nii.1.gz -man/man1/nii2mnc.1.gz -man/man1/rawtominc.1.gz -man/man1/transformtags.1.gz -man/man1/upet2mnc.1.gz -man/man1/vff2mnc.1.gz -man/man1/voxeltoworld.1.gz -man/man1/xfmconcat.1.gz -man/man1/xfmflip.1.gz -man/man1/xfminvert.1.gz -man/man3/ParseArgv.3.gz +lib/libvolume_io2.so.2.2.00 @dirrm include/volume_io --- minc-2.2.00.patch ends here --- >Release-Note: >Audit-Trail: >Unformatted: