From owner-freebsd-ports-bugs@FreeBSD.ORG Mon Mar 31 07:40:02 2014 Return-Path: Delivered-To: freebsd-ports-bugs@smarthost.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id ED4A9276 for ; Mon, 31 Mar 2014 07:40:01 +0000 (UTC) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:1900:2254:206c::16:87]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id C9E37662 for ; Mon, 31 Mar 2014 07:40:01 +0000 (UTC) Received: from freefall.freebsd.org (localhost [127.0.0.1]) by freefall.freebsd.org (8.14.8/8.14.8) with ESMTP id s2V7e1hp086557 for ; Mon, 31 Mar 2014 07:40:01 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.8/8.14.8/Submit) id s2V7e1xs086556; Mon, 31 Mar 2014 07:40:01 GMT (envelope-from gnats) Resent-Date: Mon, 31 Mar 2014 07:40:01 GMT Resent-Message-Id: <201403310740.s2V7e1xs086556@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Vladimir Chukharev Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 1B3D7E8B for ; Mon, 31 Mar 2014 07:31:09 +0000 (UTC) Received: from cgiserv.freebsd.org (cgiserv.freebsd.org [IPv6:2001:1900:2254:206a::50:4]) (using TLSv1 with cipher DHE-RSA-AES256-SHA (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id E2C085EE for ; Mon, 31 Mar 2014 07:31:08 +0000 (UTC) Received: from cgiserv.freebsd.org ([127.0.1.6]) by cgiserv.freebsd.org (8.14.8/8.14.8) with ESMTP id s2V7V8oT071797 for ; Mon, 31 Mar 2014 07:31:08 GMT (envelope-from nobody@cgiserv.freebsd.org) Received: (from nobody@localhost) by cgiserv.freebsd.org (8.14.8/8.14.8/Submit) id s2V7V8uG071792; Mon, 31 Mar 2014 07:31:08 GMT (envelope-from nobody) Message-Id: <201403310731.s2V7V8uG071792@cgiserv.freebsd.org> Date: Mon, 31 Mar 2014 07:31:08 GMT From: Vladimir Chukharev To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-3.1 Subject: ports/188114: math/py-numpy is broken on 9.2-STABLE X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.17 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 31 Mar 2014 07:40:02 -0000 >Number: 188114 >Category: ports >Synopsis: math/py-numpy is broken on 9.2-STABLE >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: sw-bug >Submitter-Id: current-users >Arrival-Date: Mon Mar 31 07:40:01 UTC 2014 >Closed-Date: >Last-Modified: >Originator: Vladimir Chukharev >Release: 9.2-STABLE >Organization: >Environment: FreeBSD vovaasus 9.2-STABLE FreeBSD 9.2-STABLE #14 r263914M: Sat Mar 29 22:03:43 EET 2014 root@vovaasus:/usr/obj/usr/src/sys/VOVA amd64 >Description: math/py-numpy is broken on 9.2-STABLE by the change of the default gcc version to 4.7. I tried to compile everything related to numpy with gcc48 as recommended by someone, but the error stays the same (sans version in the path in ImportError line below): $ python -c "import numpy" Traceback (most recent call last): File "", line 1, in File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line 153, in from . import add_newdocs File "/usr/local/lib/python2.7/site-packages/numpy/add_newdocs.py", line 13, in from numpy.lib import add_newdoc File "/usr/local/lib/python2.7/site-packages/numpy/lib/__init__.py", line 18, in from .polynomial import * File "/usr/local/lib/python2.7/site-packages/numpy/lib/polynomial.py", line 19, in from numpy.linalg import eigvals, lstsq, inv File "/usr/local/lib/python2.7/site-packages/numpy/linalg/__init__.py", line 50, in from .linalg import * File "/usr/local/lib/python2.7/site-packages/numpy/linalg/linalg.py", line 29, in from numpy.linalg import lapack_lite, _umath_linalg ImportError: /lib/libgcc_s.so.1: version GCC_4.6.0 required by /usr/local/lib/gcc48/libgfortran.so.3 not found I have seen the discussions in December in preparations for the GCC version change. It seems the patch proposed in there, is in place (/usr/ports/math/py-numpy/files/patch-numpy-distutils-fcompiler-gnu.py), but apparently it's not enough... I also tried to rebuild all my ports. I did it with portmaster in-place method, though, which is not totally free from inheriting problems of previous builds. >How-To-Repeat: I see the discussions of the same bug, e.g. as py-scipy build problems. So I guess it's easy to reproduce with fresh ports on 9.2-STABLE... >Fix: >Release-Note: >Audit-Trail: >Unformatted: