From owner-freebsd-ports-bugs@FreeBSD.ORG Fri Mar 14 06:20:01 2008 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id BCD3F106566C for ; Fri, 14 Mar 2008 06:20:01 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id A1DD58FC25 for ; Fri, 14 Mar 2008 06:20:01 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (gnats@localhost [127.0.0.1]) by freefall.freebsd.org (8.14.2/8.14.2) with ESMTP id m2E6K1tH076127 for ; Fri, 14 Mar 2008 06:20:01 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.2/8.14.1/Submit) id m2E6K1Nr076126; Fri, 14 Mar 2008 06:20:01 GMT (envelope-from gnats) Resent-Date: Fri, 14 Mar 2008 06:20:01 GMT Resent-Message-Id: <200803140620.m2E6K1Nr076126@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, "Wen heping Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 3715D106566B for ; Fri, 14 Mar 2008 06:19:01 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (www.freebsd.org [IPv6:2001:4f8:fff6::21]) by mx1.freebsd.org (Postfix) with ESMTP id 2BD2B8FC2B for ; Fri, 14 Mar 2008 06:19:01 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (localhost [127.0.0.1]) by www.freebsd.org (8.14.2/8.14.2) with ESMTP id m2E6Fejv048616 for ; Fri, 14 Mar 2008 06:15:40 GMT (envelope-from nobody@www.freebsd.org) Received: (from nobody@localhost) by www.freebsd.org (8.14.2/8.14.1/Submit) id m2E6FeAB048615; Fri, 14 Mar 2008 06:15:40 GMT (envelope-from nobody) Message-Id: <200803140615.m2E6FeAB048615@www.freebsd.org> Date: Fri, 14 Mar 2008 06:15:40 GMT From: "Wen heping To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-3.1 Cc: Subject: ports/121690: [Update] ports: biology/fasta3 35.3.5 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 14 Mar 2008 06:20:01 -0000 >Number: 121690 >Category: ports >Synopsis: [Update] ports: biology/fasta3 35.3.5 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: update >Submitter-Id: current-users >Arrival-Date: Fri Mar 14 06:20:01 UTC 2008 >Closed-Date: >Last-Modified: >Originator: Wen heping >Release: FreeBSD 7.0 release >Organization: ChangAn Middle Schoo >Environment: FreeBSD fb7.wenjing.com 7.0-RELEASE FreeBSD 7.0-RELEASE #0: Sun Feb 24 19:59:52 UTC 2008 root@logan.cse.buffalo.edu:/usr/obj/usr/src/sys/GENERIC i386 >Description: summary of changes: 1 update to 35.3.5 from 34.26.2 2 modify the Makefile to compile from .tar.gz file >How-To-Repeat: >Fix: Patch attached with submission follows: --- Makefile.orig 2008-03-12 21:40:42.000000000 +0000 +++ Makefile 2008-03-12 21:51:57.000000000 +0000 @@ -7,17 +7,17 @@ # PORTNAME= fasta3 -PORTVERSION= 34.26.2 +PORTVERSION= 35.3.5 CATEGORIES= biology -MASTER_SITES= ftp://ftp.virginia.edu/pub/fasta/ +MASTER_SITES= http://faculty.virginia.edu/wrpearson/fasta/ DISTNAME= fasta-${PORTVERSION} -EXTRACT_SUFX= .shar.Z +#EXTRACT_SUFX= .shar.Z MAINTAINER= fernan@iib.unsam.edu.ar COMMENT= A collection of programs for searching DNA and protein databases NO_CDROM= May not be sold or incorporated into a commercial product -WRKSRC= ${WRKDIR}/${PORTNAME} +WRKSRC= ${WRKDIR}/${DISTNAME} SUB_FILES= pkg-message MAKEFILE= Makefile.freebsd @@ -37,13 +37,6 @@ fasta3.1 fasty3.1 fasta3.1 tfasty3.1 fasta3.1 ssearch3.1 \ fastf3.1 tfastf3.1 fasts3.1 tfasts3.1 -do-extract: - @ ${RM} -rf ${WRKDIR} - @ ${MKDIR} ${WRKSRC} - @ for file in ${EXTRACT_ONLY}; do \ - cd ${WRKSRC} && (${GZCAT} ${DISTDIR}/$${file} | ${SH} >/dev/null); \ - done - post-install: ${INSTALL_DATA} ${WRKSRC}/fastlibs ${PREFIX}/etc/fastlibs.sample @ ${MKDIR} ${DATADIR} --- distinfo.orig 2007-03-09 11:26:13.000000000 +0000 +++ distinfo 2008-03-12 21:49:29.000000000 +0000 @@ -1,3 +1,3 @@ -MD5 (fasta-34.26.2.shar.Z) = 5fec360037baa1a0ab8cc4b11f3259a4 -SHA256 (fasta-34.26.2.shar.Z) = cd6494cb508892e9121b7a42d18d629b7cb3d431c04d47f6b31364f40f1094ae -SIZE (fasta-34.26.2.shar.Z) = 853267 +MD5 (fasta-35.3.5.tar.gz) = d93ebf3fadf5225c10447fa428b92ff1 +SHA256 (fasta-35.3.5.tar.gz) = 02af2d016029a5c8d5aec32c498286643ef4bbfacb84b5ef22af77562f00589d +SIZE (fasta-35.3.5.tar.gz) = 614736 >Release-Note: >Audit-Trail: >Unformatted: