From owner-cvs-all@FreeBSD.ORG Sat Apr 11 15:15:43 2009 Return-Path: Delivered-To: cvs-all@FreeBSD.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 1B1361065670; Sat, 11 Apr 2009 15:15:43 +0000 (UTC) (envelope-from itetcu@freebsd.org) Received: from worf.ds9.tecnik93.com (worf.ds9.tecnik93.com [81.196.207.130]) by mx1.freebsd.org (Postfix) with ESMTP id E34DC8FC0A; Sat, 11 Apr 2009 15:15:41 +0000 (UTC) (envelope-from itetcu@freebsd.org) Received: from release.ixsystems.com (unknown [206.40.55.81]) by worf.ds9.tecnik93.com (Postfix) with ESMTP id 9363522C52AC; Sat, 11 Apr 2009 18:15:39 +0300 (EEST) Received: by release.ixsystems.com (Postfix, from userid 0) id E01EF8FC53; Sat, 11 Apr 2009 08:01:10 -0700 (PDT) From: QAT@FreeBSD.org To: thierry@FreeBSD.org In-Reply-To: <200904101522.n3AFMrpB047186@repoman.freebsd.org> References: <200904101522.n3AFMrpB047186@repoman.freebsd.org> X-Mailer: $Tecnik: people/itetcu/ports/QA-Tindy/QAT_postPortBuild.sh, v 1.57 2009/03/08 00:17:57 itetcu Exp $ X-QAT-Tindy_Version: tinderbox-devel-3.2_2; dsversion: 3.2 X-QAT-Jail_Arch: amd64 X-QAT-Jail_Csup_Tag: RELENG_7 X-QAT-Jail_Last_Built: 2009-03-12 23:55:59 X-QAT-Port: science/abinit X-QAT-Log: http://QAT.TecNik93.com/logs/7-STABLE-FPT-NPD/abinit-5.7.3.log X-QAT-Build_Reason: Commit X-QAT-Fail_Reason: configure_error Message-Id: <20090411150110.E01EF8FC53@release.ixsystems.com> Date: Sat, 11 Apr 2009 08:01:10 -0700 (PDT) Cc: maho@FreeBSD.org, cvs-ports@FreeBSD.org, cvs-all@FreeBSD.org, ports-committers@FreeBSD.org Subject: Re: cvs commit: ports/science/abinit Makefile distinfo pkg-plist ports/science/abinit/files patch-bindings_parser_ab_dtset_c.c patch-config+m4+init.m4 patch-config_scripts_make-macros-autotools X-BeenThere: cvs-all@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: **OBSOLETE** CVS commit messages for the entire tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 11 Apr 2009 15:15:43 -0000 The Restless Daemon identified a configure error while trying to build: abinit-5.7.3 maintained by maho@FreeBSD.org Makefile ident: $FreeBSD: ports/science/abinit/Makefile,v 1.16 2009/04/10 15:22:52 thierry Exp $ Excerpt from http://QAT.TecNik93.com/logs/7-STABLE-FPT-NPD/abinit-5.7.3.log : gfortran43 -O2 -g -ffree-line-length-none -fPIC -o abinetcdf abinetcdf-abinetcdf.o ../../src/defs/libdefs.a -L/usr/local/lib -lnetcdff -lnetcdf gfortran43 -DHAVE_CONFIG_H -I. -I../.. -I../../src/14iowfdenpot -I../../src/14iowfdenpot -I../../src/01manage_mpi -I../../src/01manage_mpi -I../../src/17ddb -I../../src/17ddb -I../../src/15gw -I../../src/15gw -I../../src/13papi_counters -I../../src/13papi_counters -I../../src/defs -I../../src/defs -I../../src/13iovars -I../../src/13iovars -I../../src/19cut3d -I../../src/19cut3d -I../../src/13xml -I../../src/13xml -I../../src/15wfs -I../../src/15wfs -I../../src/02toolbox -I../../src/02toolbox -I../../src/lib00macroav -I../../src/lib00macroav -I../../src/11util -I../../src/11util -I../../src/17lwf -I../../src/17lwf -I../../src/13ionetcdf -I../../src/13ionetcdf -I../../src/15common -I../../src/15common -I../../src/12geometry -I../../src/12geometry -I../../src/12parser -I../../src/12parser -I../../src/13recipspace -I../../src/13recipspace -I../../src/16response -I../../src/16response -I../../src/21drive -I../../src/21drive -I../../src/14bader -I../../src/14bader -I../../src/12fft s -I../../src/12ffts -I../../src/13io_mpi -I../../src/13io_mpi -I../../src/14iowfdenpot -I../../src/14iowfdenpot -I../../src/13ionetcdf -I../../src/13ionetcdf -I../../src/13io_mpi -I../../src/13io_mpi -I../../src/12geometry -I../../src/12geometry -I../../src/11util -I../../src/11util -I../../src/lib03numeric -I../../src/lib03numeric -I../../src/02toolbox -I../../src/02toolbox -I../../src/01manage_mpi -I../../src/01manage_mpi -I../../src/lib01hidempi -I../../src/lib01hidempi -I../../src/lib00macroav -I../../src/lib00macroav -I../../src/00basis -I../../src/00basis -I../../src/interfaces -I../../src/interfaces -I../../src/defs -I../../src/defs -I/usr/local/include -O2 -g -ffree-line-length-none -fPIC -c -o macroave-macroave.o `test -f 'macroave.F90' || echo './'`macroave.F90 gfortran43 -O2 -g -ffree-line-length-none -fPIC -o macroave macroave-macroave.o ../../src/14iowfdenpot/lib14iowfdenpot.a ../../src/13ionetcdf/lib13ionetcdf.a ../../src/13io_mpi/lib13io_mpis.a ../../src/12geometry/lib12geometry.a ../../src/11util/lib11util.a ../../src/lib03numeric/liblib03numeric.a ../../src/02toolbox/lib02toolbox.a ../../src/01manage_mpi/lib01manage_mpis.a ../../src/lib01hidempi/liblib01hidempis.a ../../src/lib00macroav/liblib00macroav.a ../../src/00basis/lib00basis.a ../../src/interfaces/libinterfaces.a ../../src/defs/libdefs.a -L/work/a/ports/science/abinit/work/abinit-5.7.3/prereqs/linalg -llapack -lblas -L/usr/local/lib -lnetcdff -lnetcdf gmake[3]: Leaving directory `/work/a/ports/science/abinit/work/abinit-5.7.3/src/main' Making all in libs gmake[3]: Entering directory `/work/a/ports/science/abinit/work/abinit-5.7.3/src/libs' rm -f libabibase.a ar rc libabibase.a ../defs/defs_aimfields.o ../defs/defs_aimprom.o ../defs/defs_basis.o ../defs/defs_berry.o ../defs/defs_datatypes.o ../defs/defs_dyson.o ../defs/defs_elphon.o ../defs/defs_fftdata.o ../defs/defs_interfaces.o ../defs/defs_parameters.o ../defs/defs_scalapack.o ../defs/defs_suscep.o ../defs/defs_time.o ../defs/defs_wannier90.o ../defs/defs_wvltypes.o ../defs/defs_xc.o ../defs/defs_xderive.o ../defs/defs_xfuncmpi.o ../interfaces/interfaces_bigdft.o ../interfaces/interfaces_etsf_io.o ../interfaces/interfaces_etsf_xc.o ../interfaces/interfaces_fox.o ../interfaces/interfaces_linalg.o ../interfaces/interfaces_netcdf.o ../interfaces/interfaces_plugins.o ../interfaces/interfaces_prereqs.o ../interfaces/interfaces_wannier90.o ../interfaces/interfaces_xmlf90.o ../01manage_mpi/clnmpi_band.o ../01manage_mpi/clnmpi_fft.o ../01manage_mpi/clnmpi_gs.o ../01manage_mpi/distrb2.o ../01manage_mpi/herald.o ../01manage_mpi/initmpi_band.o ../01manage_mpi/initmpi_grid.o ../01manage_ mpi/initmpi_fft.o ../01manage_mpi/initmpi_gs.o ../01manage_mpi/initmpi_respfn.o ../01manage_mpi/initmpi_seq.o ../01manage_mpi/leave_new.o ../01manage_mpi/leave_test.o ../01manage_mpi/pre_scatter.o ../01manage_mpi/scalapack.o ../01manage_mpi/split_work.o ../01manage_mpi/split_work2.o ../01manage_mpi/timab.o ../01manage_mpi/time_accu.o ../01manage_mpi/timein.o ../01manage_mpi/wrtout.o ../02toolbox/int2char.o ../02toolbox/int2char4.o ../02toolbox/m_copy.o ../02toolbox/m_errors.o ../02toolbox/m_fstrings.o ../02toolbox/m_geometry.o ../02toolbox/m_io_tools.o ../02toolbox/m_jolly_pointers.o ../lib03numeric/ass_leg_pol.o ../lib03numeric/coeffs_gausslegint.o ../lib03numeric/dzgedi.o ../lib03numeric/dzgefa.o ../lib03numeric/gamma_function.o ../lib03numeric/interp.o ../lib03numeric/intrpl.o ../lib03numeric/j0y0.o ../lib03numeric/j1y1.o ../lib03numeric/jacobi.o ../lib03numeric/k0.o ../lib03numeric/k1.o ../lib03numeric/ludcmp.o ../lib03numeric/m_numeric_tools.o ../lib03numeric/polyn_coef f.o ../lib03numeric/smooth.o ../lib03numeric/sort_int.o ../lib03numeric/sort_dp.o ../lib03numeric/splfit.o ../lib03numeric/spline.o ../lib03numeric/splint.o ../lib03numeric/uniformrandom.o ../lib03numeric/zgedi.o ../lib03numeric/zgefa.o ../11util/acrossb.o ../11util/appdig.o ../11util/atmdata.o ../11util/atmlength.o ../11util/besjm.o ../11util/calc_psden.o ../11util/calc_psden_log.o ../11util/calc_vhtnzc.o ../11util/canon9.o ../11util/chknm8.o ../11util/clsopn.o ../11util/compmesh.o ../11util/copymesh.o ../11util/ctrap.o ../11util/ctrap_gen.o ../11util/deducer0.o ../11util/derf.o ../11util/derfc.o ../11util/dtsetcopy.o ../11util/dtsetfree.o ../11util/energies_init.o ../11util/factorial.o ../11util/hermit.o ../11util/ifromr.o ../11util/inupper.o ../11util/interpol3d.o ../11util/isfile.o ../11util/jbessel.o ../11util/lxyz.o ../11util/m_special_funcs.o ../11util/matcginv.o ../11util/mati3inv.o ../11util/matrginv.o ../11util/matr3eigval.o ../11util/matr3inv.o ../11util/memerr.o ../11util/mkfilename.o ../11util/mkherm.o ../11util/mknormpath.o ../11util/mvrecord.o ../11util/nderiv.o ../11util/nderiv_gen.o ../11util/normev.o ../11util/overlap.o ../11util/pawfgrtab_utils.o ../11util/pclock.o ../11util/orthonormalize.o ../11util/pl_deriv.o ../11util/plm_coeff.o ../11util/plm_dphi.o ../11util/plm_dtheta.o ../11util/plm_d2theta.o ../11util/print_ij.o ../11util/print_ngfft.o ../11util/poisson.o ../11util/prmat.o ../11util/ratint.o ../11util/rhoij_utils.o ../11util/rotmat.o ../11util/simp_gen.o ../11util/slxyzs.o ../11util/status.o ../11util/wvl_utils.o ../11util/ylm_cmplx.o ../11util/ys.o ../11util/zorthonormalize.o ../12parser/inarray.o ../12parser/incomprs.o ../12parser/inread.o ../12parser/inreplsp.o ../12parser/instrng.o ../12parser/intagm.o ../12geometry/bldgrp.o ../12geometry/bldgrpaf.o ../12geometry/bonds_lgth_angles.o ../12geometry/chkdilatmx.o ../12geometry/chkgrp.o ../12geometry/chkorthsy.o ../12geometry/chkprimit.o ../12geometry/gensymshub.o ../ 12geometry/gensymshub4.o ../12geometry/gensymspgr.o ../12geometry/getptgroupma.o ../12geometry/getspinrot.o ../12geometry/gridgcart.o ../12geometry/holocell.o ../12geometry/metric.o ../12geometry/mkrdim.o ../12geometry/operat.o ../12geometry/prtspgroup.o ../12geometry/ptgmadata.o ../12geometry/remove_inversion.o ../12geometry/smallprim.o ../12geometry/spgdata.o ../12geometry/strconv.o ../12geometry/strainsym.o ../12geometry/stresssym.o ../12geometry/sym2cart.o ../12geometry/symanal.o ../12geometry/symatm.o ../12geometry/symaxes.o ../12geometry/symbrav.o ../12geometry/symchk.o ../12geometry/symdet.o ../12geometry/symfind.o ../12geometry/symlist_bcc.o ../12geometry/symlist_fcc.o ../12geometry/symlist_others.o ../12geometry/symlist_prim.o ../12geometry/symmultsg.o ../12geometry/symplanes.o ../12geometry/symredcart.o ../12geometry/symrelrot.o ../12geometry/symsgcube.o ../12geometry/symsghexa.o ../12geometry/symsgmono.o ../12geometry/symsgortho.o ../12geometry/symsgtetra.o ../12g eometry/symspgr.o ../12geometry/symzat.o ../12geometry/wvl_setboxgeometry.o ../12geometry/xredxcart.o ../13xml/append_cml.o ../13xml/append_cml2.o ../13xml/findmarkup.o ../13xml/getattribute.o ../13xml/importcml.o ../13xml/prt_cml.o ../13xml/prt_cml2.o ../13recipspace/bound.o ../13recipspace/getcut.o ../13recipspace/getkgrid.o ../13recipspace/getkpgnorm.o ../13recipspace/getmpw.o ../13recipspace/getng.o ../13recipspace/getph.o ../13recipspace/getwtk.o ../13recipspace/get_irredg.o ../13recipspace/get_full_gsphere.o ../13recipspace/get_full_kgrid.o ../13recipspace/get_tetra.o ../13recipspace/initylmg.o ../13recipspace/irrzg.o ../13recipspace/kpgio.o ../13recipspace/kpgsph.o ../13recipspace/laplacian.o ../13recipspace/merge_kgirr.o ../13recipspace/mkkin.o ../13recipspace/pmat2cart.o ../13recipspace/setshells.o ../13recipspace/setsym.o ../13recipspace/smpbz.o ../13recipspace/symkchk.o ../13recipspace/symkpt.o ../13recipspace/symg.o ../13recipspace/symq3.o ../13recipspace/testkgr id.o ../13iovars/chkdpr.o ../13iovars/chkinp.o ../13iovars/chkint.o ../13iovars/chkneu.o ../13iovars/chkvars.o ../13iovars/dsksta.o ../13iovars/getdim_nloc.o ../13iovars/indefo.o ../13iovars/ingeo.o ../13iovars/ingeobld.o ../13iovars/inkpts.o ../13iovars/invacuum.o ../13iovars/invars0.o ../13iovars/invars1.o ../13iovars/invars1m.o ../13iovars/invars2.o ../13iovars/invars2m.o ../13iovars/memana.o ../13iovars/memkss.o ../13iovars/memorf.o ../13iovars/memory.o ../13iovars/outqmc.o ../13iovars/outvars.o ../13iovars/outvar1.o ../13iovars/out_acknowl.o ../13iovars/out_geometry_xml.o ../13iovars/out_resultsgs_xml.o ../13iovars/parsefile.o ../13iovars/prtocc.o ../13iovars/prttagm.o ../13iovars/wvl_memory.o ranlib libabibase.a gmake[3]: Leaving directory `/work/a/ports/science/abinit/work/abinit-5.7.3/src/libs' gmake[3]: Entering directory `/work/a/ports/science/abinit/work/abinit-5.7.3/src' gmake[3]: Nothing to be done for `all-am'. gmake[3]: Leaving directory `/work/a/ports/science/abinit/work/abinit-5.7.3/src' gmake[2]: Leaving directory `/work/a/ports/science/abinit/work/abinit-5.7.3/src' Making all in bindings gmake[2]: Entering directory `/work/a/ports/science/abinit/work/abinit-5.7.3/bindings' Making all in parser gmake[3]: Entering directory `/work/a/ports/science/abinit/work/abinit-5.7.3/bindings/parser' gmake -f ../../bindings/parser/parser.mk gmake[4]: Entering directory `/work/a/ports/science/abinit/work/abinit-5.7.3/bindings/parser' /work/a/ports/science/abinit/work/abinit-5.7.3/bindings/parser/parse_dtset.py gcc43 -I/usr/local/include/python2.5 -I/usr/local/include/python2.5 -I. -O2 -fno-strict-aliasing -pipe -c /work/a/ports/science/abinit/work/abinit-5.7.3/bindings/parser/ab_dtset_py.c gfortran43 -shared -o abinit.so ab_dtset_py.o -L/work/a/ports/science/abinit/work/abinit-5.7.3/src/libs -labibase /usr/bin/ld: ab_dtset_py.o: relocation R_X86_64_32 can not be used when making a shared object; recompile with -fPIC ab_dtset_py.o: could not read symbols: Bad value collect2: ld returned 1 exit status gmake[4]: *** [python] Error 1 gmake[4]: Leaving directory `/work/a/ports/science/abinit/work/abinit-5.7.3/bindings/parser' gmake[3]: *** [bindings-ready] Error 2 gmake[3]: Leaving directory `/work/a/ports/science/abinit/work/abinit-5.7.3/bindings/parser' gmake[2]: *** [all-recursive] Error 1 gmake[2]: Leaving directory `/work/a/ports/science/abinit/work/abinit-5.7.3/bindings' gmake[1]: *** [all-recursive] Error 1 gmake[1]: Leaving directory `/work/a/ports/science/abinit/work/abinit-5.7.3' gmake: *** [all] Error 2 *** Error code 1 Stop in /a/ports/science/abinit. ================================================================ build of /usr/ports/science/abinit ended at Sat Apr 11 15:01:08 UTC 2009 The tarballed WRKDIR can be found here: http://QAT.TecNik93.com/wrkdirs/7-STABLE-FPT-NPD/abinit-5.7.3.tbz PortsMon page for the port: http://portsmon.freebsd.org/portoverview.py?category=science&portname=abinit The build which triggered this BotMail was done under tinderbox-devel-3.2_2; dsversion: 3.2 on RELENG_7 on amd64, kern.smp.cpus: 4 with tinderd_flags="-nullfs -plistcheck -onceonly" and ccache support, with the "official" up-to-date Ports Tree, with the following vars set: NOPORTDOCS=yes, NOPORTEXAMPLES=yes, NOPORTDATA=yes, FORCE_PACKAGE=yes. A description of the testing process can be found here: http://T32.TecNik93.com/FreeBSD/QA-Tindy/ Thanks for your work on making FreeBSD better, -- QAT - your friendly neighborhood Daemon, preparing a heck of an error trapping system: - "HMC and EOI?" - "Halt, Melt and Catch fire or Execute Operator Immediately."