From owner-freebsd-ports-bugs@FreeBSD.ORG Sat Nov 22 04:20:02 2008 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 49D301065670 for ; Sat, 22 Nov 2008 04:20:02 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id 2333C8FC19 for ; Sat, 22 Nov 2008 04:20:02 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (gnats@localhost [127.0.0.1]) by freefall.freebsd.org (8.14.3/8.14.3) with ESMTP id mAM4K10Y020799 for ; Sat, 22 Nov 2008 04:20:01 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.3/8.14.3/Submit) id mAM4K1P6020798; Sat, 22 Nov 2008 04:20:01 GMT (envelope-from gnats) Resent-Date: Sat, 22 Nov 2008 04:20:01 GMT Resent-Message-Id: <200811220420.mAM4K1P6020798@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, "Pedro F. Giffuni" Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id C189E106564A for ; Sat, 22 Nov 2008 04:16:27 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (www.freebsd.org [IPv6:2001:4f8:fff6::21]) by mx1.freebsd.org (Postfix) with ESMTP id AC5F88FC08 for ; Sat, 22 Nov 2008 04:16:27 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (localhost [127.0.0.1]) by www.freebsd.org (8.14.3/8.14.3) with ESMTP id mAM4GRiT089134 for ; Sat, 22 Nov 2008 04:16:27 GMT (envelope-from nobody@www.freebsd.org) Received: (from nobody@localhost) by www.freebsd.org (8.14.3/8.14.3/Submit) id mAM4GRxs089133; Sat, 22 Nov 2008 04:16:27 GMT (envelope-from nobody) Message-Id: <200811220416.mAM4GRxs089133@www.freebsd.org> Date: Sat, 22 Nov 2008 04:16:27 GMT From: "Pedro F. Giffuni" To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-3.1 Cc: Subject: ports/129063: Update math/R to version 2.8.0 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 22 Nov 2008 04:20:02 -0000 >Number: 129063 >Category: ports >Synopsis: Update math/R to version 2.8.0 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: update >Submitter-Id: current-users >Arrival-Date: Sat Nov 22 04:20:01 UTC 2008 >Closed-Date: >Last-Modified: >Originator: Pedro F. Giffuni >Release: 7.1-BETA2 >Organization: >Environment: FreeBSD kakumen.cable.net.co 7.1-BETA2 FreeBSD 7.1-BETA2 #0: Sun Oct 12 20:59:28 UTC 2008 root@driscoll.cse.buffalo.edu:/usr/obj/usr/src/sys/GENERIC amd64 >Description: - Update to latest release with new features. >How-To-Repeat: >Fix: diff -ruN R.orig/Makefile R/Makefile --- R.orig/Makefile 2008-11-21 21:07:10.000000000 -0500 +++ R/Makefile 2008-11-21 21:08:34.000000000 -0500 @@ -7,7 +7,7 @@ # PORTNAME= R -PORTVERSION= 2.7.2 +PORTVERSION= 2.8.0 CATEGORIES= math lang MASTER_SITES= http://cran.r-project.org/src/base/R-2/ \ ftp://cran.r-project.org/pub/R/src/base/R-2/ \ diff -ruN R.orig/distinfo R/distinfo --- R.orig/distinfo 2008-11-21 21:07:10.000000000 -0500 +++ R/distinfo 2008-11-21 21:10:50.000000000 -0500 @@ -1,3 +1,3 @@ -MD5 (R-2.7.2.tar.gz) = 6122945e9301825b97a506151b3cefde -SHA256 (R-2.7.2.tar.gz) = 7184c1f85fafce518e6dbccb5a64ba47a62d8694c7019da0e1c1e83ff98c3ff4 -SIZE (R-2.7.2.tar.gz) = 16466658 +MD5 (R-2.8.0.tar.gz) = 5213c9644aec984278b669df1a63a2ce +SHA256 (R-2.8.0.tar.gz) = 3f125987ed988ccc73234da4c0daee8c79eac81aff66e10d9caeb9616d77c19d +SIZE (R-2.8.0.tar.gz) = 16558443 diff -ruN R.orig/pkg-plist R/pkg-plist --- R.orig/pkg-plist 2008-11-21 21:07:10.000000000 -0500 +++ R/pkg-plist 2008-11-21 23:08:12.000000000 -0500 @@ -68,9 +68,7 @@ lib/R/include/R_ext/stats_stubs.h lib/R/include/Rconfig.h lib/R/include/Rdefines.h -lib/R/include/Rdevices.h lib/R/include/Rembedded.h -lib/R/include/Rgraphics.h lib/R/include/Rinterface.h lib/R/include/Rinternals.h lib/R/include/Rmath.h @@ -874,6 +872,7 @@ lib/R/library/base/R-ex/groupGeneric.R lib/R/library/base/R-ex/gzcon.R lib/R/library/base/R-ex/iconv.R +lib/R/library/base/R-ex/icuSetCollate.R lib/R/library/base/R-ex/identical.R lib/R/library/base/R-ex/ifelse.R lib/R/library/base/R-ex/integer.R @@ -963,6 +962,7 @@ lib/R/library/base/R-ex/rank.R lib/R/library/base/R-ex/rapply.R lib/R/library/base/R-ex/raw.R +lib/R/library/base/R-ex/rawConnection.R lib/R/library/base/R-ex/rawConversion.R lib/R/library/base/R-ex/readBin.R lib/R/library/base/R-ex/readChar.R @@ -1247,6 +1247,7 @@ lib/R/library/base/help/gzcon lib/R/library/base/help/hexmode lib/R/library/base/help/iconv +lib/R/library/base/help/icuSetCollate lib/R/library/base/help/identical lib/R/library/base/help/identity lib/R/library/base/help/ifelse @@ -1260,6 +1261,7 @@ lib/R/library/base/help/is.object lib/R/library/base/help/is.recursive lib/R/library/base/help/is.single +lib/R/library/base/help/is.unsorted lib/R/library/base/help/isR lib/R/library/base/help/isS4 lib/R/library/base/help/isSymmetric @@ -1347,6 +1349,7 @@ lib/R/library/base/help/rank lib/R/library/base/help/rapply lib/R/library/base/help/raw +lib/R/library/base/help/rawConnection lib/R/library/base/help/rawConversion lib/R/library/base/help/readBin lib/R/library/base/help/readChar @@ -1376,6 +1379,7 @@ lib/R/library/base/help/seq.POSIXt lib/R/library/base/help/sequence lib/R/library/base/help/serialize +lib/R/library/base/help/setTimeLimit lib/R/library/base/help/sets lib/R/library/base/help/shQuote lib/R/library/base/help/showConnections @@ -1444,6 +1448,7 @@ lib/R/library/base/help/with lib/R/library/base/help/write lib/R/library/base/help/writeLines +lib/R/library/base/help/xtfrm lib/R/library/base/help/zMachine lib/R/library/base/help/zMethods lib/R/library/base/help/zScript @@ -1637,6 +1642,7 @@ lib/R/library/base/html/gzcon.html lib/R/library/base/html/hexmode.html lib/R/library/base/html/iconv.html +lib/R/library/base/html/icuSetCollate.html lib/R/library/base/html/identical.html lib/R/library/base/html/identity.html lib/R/library/base/html/ifelse.html @@ -1650,6 +1656,7 @@ lib/R/library/base/html/is.object.html lib/R/library/base/html/is.recursive.html lib/R/library/base/html/is.single.html +lib/R/library/base/html/is.unsorted.html lib/R/library/base/html/isR.html lib/R/library/base/html/isS4.html lib/R/library/base/html/isSymmetric.html @@ -1737,6 +1744,7 @@ lib/R/library/base/html/rank.html lib/R/library/base/html/rapply.html lib/R/library/base/html/raw.html +lib/R/library/base/html/rawConnection.html lib/R/library/base/html/rawConversion.html lib/R/library/base/html/readBin.html lib/R/library/base/html/readChar.html @@ -1766,6 +1774,7 @@ lib/R/library/base/html/seq.html lib/R/library/base/html/sequence.html lib/R/library/base/html/serialize.html +lib/R/library/base/html/setTimeLimit.html lib/R/library/base/html/sets.html lib/R/library/base/html/shQuote.html lib/R/library/base/html/showConnections.html @@ -1834,6 +1843,7 @@ lib/R/library/base/html/with.html lib/R/library/base/html/write.html lib/R/library/base/html/writeLines.html +lib/R/library/base/html/xtfrm.html lib/R/library/base/html/zMachine.html lib/R/library/base/html/zMethods.html lib/R/library/base/html/zScript.html @@ -2026,6 +2036,7 @@ lib/R/library/base/latex/gzcon.tex lib/R/library/base/latex/hexmode.tex lib/R/library/base/latex/iconv.tex +lib/R/library/base/latex/icuSetCollate.tex lib/R/library/base/latex/identical.tex lib/R/library/base/latex/identity.tex lib/R/library/base/latex/ifelse.tex @@ -2039,6 +2050,7 @@ lib/R/library/base/latex/is.object.tex lib/R/library/base/latex/is.recursive.tex lib/R/library/base/latex/is.single.tex +lib/R/library/base/latex/is.unsorted.tex lib/R/library/base/latex/isR.tex lib/R/library/base/latex/isS4.tex lib/R/library/base/latex/isSymmetric.tex @@ -2126,6 +2138,7 @@ lib/R/library/base/latex/rank.tex lib/R/library/base/latex/rapply.tex lib/R/library/base/latex/raw.tex +lib/R/library/base/latex/rawConnection.tex lib/R/library/base/latex/rawConversion.tex lib/R/library/base/latex/readBin.tex lib/R/library/base/latex/readChar.tex @@ -2155,6 +2168,7 @@ lib/R/library/base/latex/seq.tex lib/R/library/base/latex/sequence.tex lib/R/library/base/latex/serialize.tex +lib/R/library/base/latex/setTimeLimit.tex lib/R/library/base/latex/sets.tex lib/R/library/base/latex/shQuote.tex lib/R/library/base/latex/showConnections.tex @@ -2223,6 +2237,7 @@ lib/R/library/base/latex/with.tex lib/R/library/base/latex/write.tex lib/R/library/base/latex/writeLines.tex +lib/R/library/base/latex/xtfrm.tex lib/R/library/base/latex/zMachine.tex lib/R/library/base/latex/zMethods.tex lib/R/library/base/latex/zScript.tex @@ -2933,6 +2948,7 @@ lib/R/library/datasets/R-ex/mtcars.R lib/R/library/datasets/R-ex/nhtemp.R lib/R/library/datasets/R-ex/nottem.R +lib/R/library/datasets/R-ex/occupationalStatus.R lib/R/library/datasets/R-ex/precip.R lib/R/library/datasets/R-ex/presidents.R lib/R/library/datasets/R-ex/pressure.R @@ -3019,6 +3035,7 @@ lib/R/library/datasets/help/mtcars lib/R/library/datasets/help/nhtemp lib/R/library/datasets/help/nottem +lib/R/library/datasets/help/occupationalStatus lib/R/library/datasets/help/precip lib/R/library/datasets/help/presidents lib/R/library/datasets/help/pressure @@ -3105,6 +3122,7 @@ lib/R/library/datasets/html/mtcars.html lib/R/library/datasets/html/nhtemp.html lib/R/library/datasets/html/nottem.html +lib/R/library/datasets/html/occupationalStatus.html lib/R/library/datasets/html/precip.html lib/R/library/datasets/html/presidents.html lib/R/library/datasets/html/pressure.html @@ -3190,6 +3208,7 @@ lib/R/library/datasets/latex/mtcars.tex lib/R/library/datasets/latex/nhtemp.tex lib/R/library/datasets/latex/nottem.tex +lib/R/library/datasets/latex/occupationalStatus.tex lib/R/library/datasets/latex/precip.tex lib/R/library/datasets/latex/presidents.tex lib/R/library/datasets/latex/pressure.tex @@ -3978,6 +3997,7 @@ lib/R/library/grid/R-ex/grid.locator.R lib/R/library/grid/R-ex/grid.ls.R lib/R/library/grid/R-ex/grid.move.to.R +lib/R/library/grid/R-ex/grid.null.R lib/R/library/grid/R-ex/grid.plot.and.legend.R lib/R/library/grid/R-ex/grid.polygon.R lib/R/library/grid/R-ex/grid.record.R @@ -4074,6 +4094,7 @@ lib/R/library/grid/help/grid.ls lib/R/library/grid/help/grid.move.to lib/R/library/grid/help/grid.newpage +lib/R/library/grid/help/grid.null lib/R/library/grid/help/grid.pack lib/R/library/grid/help/grid.place lib/R/library/grid/help/grid.plot.and.legend @@ -4148,6 +4169,7 @@ lib/R/library/grid/html/grid.ls.html lib/R/library/grid/html/grid.move.to.html lib/R/library/grid/html/grid.newpage.html +lib/R/library/grid/html/grid.null.html lib/R/library/grid/html/grid.pack.html lib/R/library/grid/html/grid.place.html lib/R/library/grid/html/grid.plot.and.legend.html @@ -4221,6 +4243,7 @@ lib/R/library/grid/latex/grid.ls.tex lib/R/library/grid/latex/grid.move.to.tex lib/R/library/grid/latex/grid.newpage.tex +lib/R/library/grid/latex/grid.null.tex lib/R/library/grid/latex/grid.pack.tex lib/R/library/grid/latex/grid.place.tex lib/R/library/grid/latex/grid.plot.and.legend.tex @@ -4525,11 +4548,14 @@ lib/R/library/methods/R-ex/NextMethod.R lib/R/library/methods/R-ex/RClassUtils.R lib/R/library/methods/R-ex/RMethodUtils.R +lib/R/library/methods/R-ex/S3Part.R lib/R/library/methods/R-ex/S4groupGeneric.R lib/R/library/methods/R-ex/StructureClasses.R lib/R/library/methods/R-ex/as.R +lib/R/library/methods/R-ex/callGeneric.R lib/R/library/methods/R-ex/canCoerce.R lib/R/library/methods/R-ex/cbind2.R +lib/R/library/methods/R-ex/dotsMethods.R lib/R/library/methods/R-ex/findMethods.R lib/R/library/methods/R-ex/getClass.R lib/R/library/methods/R-ex/getMethod.R @@ -4542,7 +4568,6 @@ lib/R/library/methods/R-ex/new.R lib/R/library/methods/R-ex/promptClass.R lib/R/library/methods/R-ex/representation.R -lib/R/library/methods/R-ex/seemsS4Object.R lib/R/library/methods/R-ex/setClass.R lib/R/library/methods/R-ex/setClassUnion.R lib/R/library/methods/R-ex/setGeneric.R @@ -4574,15 +4599,19 @@ lib/R/library/methods/help/ObjectsWithPackage-class lib/R/library/methods/help/RClassUtils lib/R/library/methods/help/RMethodUtils +lib/R/library/methods/help/S3Part lib/R/library/methods/help/S4groupGeneric lib/R/library/methods/help/SClassExtension-class lib/R/library/methods/help/Session lib/R/library/methods/help/StructureClasses lib/R/library/methods/help/TraceClasses lib/R/library/methods/help/as +lib/R/library/methods/help/callGeneric lib/R/library/methods/help/canCoerce lib/R/library/methods/help/cbind2 lib/R/library/methods/help/classRepresentation-class +lib/R/library/methods/help/dotsMethods +lib/R/library/methods/help/findClass lib/R/library/methods/help/findMethods lib/R/library/methods/help/fixPrevious lib/R/library/methods/help/genericFunction-class @@ -4597,14 +4626,12 @@ lib/R/library/methods/help/languageEl lib/R/library/methods/help/method.skeleton lib/R/library/methods/help/methodUtilities -lib/R/library/methods/help/methods-deprecated +lib/R/library/methods/help/methods-defunct lib/R/library/methods/help/methods-package lib/R/library/methods/help/new -lib/R/library/methods/help/oldGet lib/R/library/methods/help/promptClass lib/R/library/methods/help/promptMethods lib/R/library/methods/help/representation -lib/R/library/methods/help/seemsS4Object lib/R/library/methods/help/setClass lib/R/library/methods/help/setClassUnion lib/R/library/methods/help/setGeneric @@ -4637,15 +4664,19 @@ lib/R/library/methods/html/ObjectsWithPackage-class.html lib/R/library/methods/html/RClassUtils.html lib/R/library/methods/html/RMethodUtils.html +lib/R/library/methods/html/S3Part.html lib/R/library/methods/html/S4groupGeneric.html lib/R/library/methods/html/SClassExtension-class.html lib/R/library/methods/html/Session.html lib/R/library/methods/html/StructureClasses.html lib/R/library/methods/html/TraceClasses.html lib/R/library/methods/html/as.html +lib/R/library/methods/html/callGeneric.html lib/R/library/methods/html/canCoerce.html lib/R/library/methods/html/cbind2.html lib/R/library/methods/html/classRepresentation-class.html +lib/R/library/methods/html/dotsMethods.html +lib/R/library/methods/html/findClass.html lib/R/library/methods/html/findMethods.html lib/R/library/methods/html/fixPrevious.html lib/R/library/methods/html/genericFunction-class.html @@ -4660,14 +4691,12 @@ lib/R/library/methods/html/languageEl.html lib/R/library/methods/html/method.skeleton.html lib/R/library/methods/html/methodUtilities.html -lib/R/library/methods/html/methods-deprecated.html +lib/R/library/methods/html/methods-defunct.html lib/R/library/methods/html/methods-package.html lib/R/library/methods/html/new.html -lib/R/library/methods/html/oldGet.html lib/R/library/methods/html/promptClass.html lib/R/library/methods/html/promptMethods.html lib/R/library/methods/html/representation.html -lib/R/library/methods/html/seemsS4Object.html lib/R/library/methods/html/setClass.html lib/R/library/methods/html/setClassUnion.html lib/R/library/methods/html/setGeneric.html @@ -4699,15 +4728,19 @@ lib/R/library/methods/latex/ObjectsWithPackage-class.tex lib/R/library/methods/latex/RClassUtils.tex lib/R/library/methods/latex/RMethodUtils.tex +lib/R/library/methods/latex/S3Part.tex lib/R/library/methods/latex/S4groupGeneric.tex lib/R/library/methods/latex/SClassExtension-class.tex lib/R/library/methods/latex/Session.tex lib/R/library/methods/latex/StructureClasses.tex lib/R/library/methods/latex/TraceClasses.tex lib/R/library/methods/latex/as.tex +lib/R/library/methods/latex/callGeneric.tex lib/R/library/methods/latex/canCoerce.tex lib/R/library/methods/latex/cbind2.tex lib/R/library/methods/latex/classRepresentation-class.tex +lib/R/library/methods/latex/dotsMethods.tex +lib/R/library/methods/latex/findClass.tex lib/R/library/methods/latex/findMethods.tex lib/R/library/methods/latex/fixPrevious.tex lib/R/library/methods/latex/genericFunction-class.tex @@ -4722,14 +4755,12 @@ lib/R/library/methods/latex/languageEl.tex lib/R/library/methods/latex/method.skeleton.tex lib/R/library/methods/latex/methodUtilities.tex -lib/R/library/methods/latex/methods-deprecated.tex +lib/R/library/methods/latex/methods-defunct.tex lib/R/library/methods/latex/methods-package.tex lib/R/library/methods/latex/new.tex -lib/R/library/methods/latex/oldGet.tex lib/R/library/methods/latex/promptClass.tex lib/R/library/methods/latex/promptMethods.tex lib/R/library/methods/latex/representation.tex -lib/R/library/methods/latex/seemsS4Object.tex lib/R/library/methods/latex/setClass.tex lib/R/library/methods/latex/setClassUnion.tex lib/R/library/methods/latex/setGeneric.tex @@ -8359,6 +8390,7 @@ lib/R/library/utils/R-ex/prompt.R lib/R/library/utils/R-ex/promptData.R lib/R/library/utils/R-ex/promptPackage.R +lib/R/library/utils/R-ex/read.DIF.R lib/R/library/utils/R-ex/read.fortran.R lib/R/library/utils/R-ex/read.fwf.R lib/R/library/utils/R-ex/read.socket.R @@ -8435,6 +8467,7 @@ lib/R/library/utils/help/glob2rx lib/R/library/utils/help/head lib/R/library/utils/help/help +lib/R/library/utils/help/help.request lib/R/library/utils/help/help.search lib/R/library/utils/help/help.start lib/R/library/utils/help/index.search @@ -8542,6 +8575,7 @@ lib/R/library/utils/html/glob2rx.html lib/R/library/utils/html/head.html lib/R/library/utils/html/help.html +lib/R/library/utils/html/help.request.html lib/R/library/utils/html/help.search.html lib/R/library/utils/html/help.start.html lib/R/library/utils/html/index.search.html @@ -8648,6 +8682,7 @@ lib/R/library/utils/latex/getS3method.tex lib/R/library/utils/latex/glob2rx.tex lib/R/library/utils/latex/head.tex +lib/R/library/utils/latex/help.request.tex lib/R/library/utils/latex/help.search.tex lib/R/library/utils/latex/help.start.tex lib/R/library/utils/latex/help.tex @@ -8703,6 +8738,8 @@ lib/R/library/utils/latex/write.table.tex lib/R/library/utils/latex/zip.file.extract.tex lib/R/library/utils/man/utils.Rd.gz +lib/R/library/utils/misc/exDIF.csv +lib/R/library/utils/misc/exDIF.dif %%NLS%%lib/R/library/utils/po/en@quot/LC_MESSAGES/R-utils.mo %%NLS%%lib/R/library/utils/po/de/LC_MESSAGES/R-utils.mo %%NLS%%lib/R/library/utils/po/fr/LC_MESSAGES/R-utils.mo @@ -8899,6 +8936,7 @@ %%NLS%%@dirrm lib/R/library/utils/po/en@quot/LC_MESSAGES %%NLS%%@dirrm lib/R/library/utils/po/en@quot %%NLS%%@dirrm lib/R/library/utils/po +@dirrm lib/R/library/utils/misc @dirrm lib/R/library/utils/man @dirrm lib/R/library/utils/latex @dirrm lib/R/library/utils/html >Release-Note: >Audit-Trail: >Unformatted: