From owner-freebsd-ports-bugs@FreeBSD.ORG Thu Jan 12 18:00:26 2006 Return-Path: X-Original-To: freebsd-ports-bugs@hub.freebsd.org Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.FreeBSD.org (mx1.freebsd.org [216.136.204.125]) by hub.freebsd.org (Postfix) with ESMTP id AE2A416A41F for ; Thu, 12 Jan 2006 18:00:26 +0000 (GMT) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [216.136.204.21]) by mx1.FreeBSD.org (Postfix) with ESMTP id 16D2343D5C for ; Thu, 12 Jan 2006 18:00:22 +0000 (GMT) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (gnats@localhost [127.0.0.1]) by freefall.freebsd.org (8.13.4/8.13.4) with ESMTP id k0CI0L3D014959 for ; Thu, 12 Jan 2006 18:00:21 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.13.4/8.13.4/Submit) id k0CI0LmS014958; Thu, 12 Jan 2006 18:00:21 GMT (envelope-from gnats) Resent-Date: Thu, 12 Jan 2006 18:00:21 GMT Resent-Message-Id: <200601121800.k0CI0LmS014958@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Fernan Aguero Received: from mx1.FreeBSD.org (mx1.freebsd.org [216.136.204.125]) by hub.freebsd.org (Postfix) with ESMTP id D597C16A420 for ; Thu, 12 Jan 2006 17:50:29 +0000 (GMT) (envelope-from fernan@pi.iib.unsam.edu.ar) Received: from smtp.unsam.edu.ar (smtp.unsam.edu.ar [170.210.48.3]) by mx1.FreeBSD.org (Postfix) with ESMTP id 49DCC43D45 for ; Thu, 12 Jan 2006 17:50:25 +0000 (GMT) (envelope-from fernan@pi.iib.unsam.edu.ar) Received: from pi.iib.unsam.edu.ar (pi.iib.unsam.edu.ar [192.168.10.11]) by smtp.unsam.edu.ar (8.12.6/8.12.6) with ESMTP id k0CHnVFZ097246 for ; Thu, 12 Jan 2006 14:49:31 -0300 (ART) (envelope-from fernan@pi.iib.unsam.edu.ar) Received: from pi.iib.unsam.edu.ar (localhost [127.0.0.1]) by pi.iib.unsam.edu.ar (8.13.1/8.13.1) with ESMTP id k0CHo3hP091560 for ; Thu, 12 Jan 2006 14:50:03 -0300 (ART) (envelope-from fernan@pi.iib.unsam.edu.ar) Received: (from fernan@localhost) by pi.iib.unsam.edu.ar (8.13.1/8.13.1/Submit) id k0CHo3WK091559; Thu, 12 Jan 2006 14:50:03 -0300 (ART) (envelope-from fernan) Message-Id: <200601121750.k0CHo3WK091559@pi.iib.unsam.edu.ar> Date: Thu, 12 Jan 2006 14:50:03 -0300 (ART) From: Fernan Aguero To: FreeBSD-gnats-submit@FreeBSD.org X-Send-Pr-Version: 3.113 Cc: Subject: ports/91715: [ maintainer-update ] update biology/blast X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list Reply-To: Fernan Aguero List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 12 Jan 2006 18:00:26 -0000 >Number: 91715 >Category: ports >Synopsis: [ maintainer-update ] update biology/blast >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Thu Jan 12 18:00:21 GMT 2006 >Closed-Date: >Last-Modified: >Originator: Fernan Aguero >Release: FreeBSD 6.0-RELEASE i386 >Organization: IIB-UNSAM >Environment: FreeBSD omega.iib.unsam.edu.ar 6.0-RELEASE-p2 FreeBSD 6.0-RELEASE-p2 #0: Thu Jan 12 11:28:24 ART 2006 fernan@omega.iib.unsam.edu.ar:/usr/obj/usr/src/sys/OMEGA i386 >Description: the authors removed a file (parameters.pdf) from the distribution), which resulted in a broken port. I also took the opportunity to bump PORTREVISION to the date of the latest release of blast-2.0 (http://blast.wustl.edu/) >How-To-Repeat: >Fix: --- blast.diff begins here --- diff -ruN /usr/ports/biology/blast/Makefile blast/Makefile --- /usr/ports/biology/blast/Makefile Fri Mar 18 10:01:07 2005 +++ blast/Makefile Wed Jan 11 12:15:30 2006 @@ -8,7 +8,7 @@ PORTNAME= wu-blast PORTVERSION= 2.0 -PORTREVISION= 20050316 +PORTREVISION= 20060101 CATEGORIES= biology MASTER_SITES= # EXTRACT_SUFX= .tar.Z @@ -30,7 +30,7 @@ PKGMESSAGE= ${WRKDIR}/pkg-message PORTDOCS= COPYRIGHT FAQ-Indexing.html HISTORY LICENSE Memory.html \ - README.html parameters.html parameters.pdf + README.html parameters.html BINS= blasta gb2fasta gt2fasta memfile nrdb pam patdb \ pir2fasta sp2fasta xdformat xdget SCRIPTS= wu-blastall wu-formatdb diff -ruN /usr/ports/biology/blast/distinfo blast/distinfo --- /usr/ports/biology/blast/distinfo Fri Nov 19 14:27:44 2004 +++ blast/distinfo Wed Jan 11 10:43:35 2006 @@ -1,2 +1,4 @@ MD5 (blast2.freebsd-4.x-i686.tar.Z) = IGNORE MD5 (blast2.freebsd-i686.tar.Z) = IGNORE +SHA256 (blast2.freebsd-4.x-i686.tar.Z) = IGNORE +SHA256 (blast2.freebsd-i686.tar.Z) = IGNORE --- blast.diff ends here --- >Release-Note: >Audit-Trail: >Unformatted: