From owner-freebsd-ports-bugs@FreeBSD.ORG Sat May 24 05:40:00 2014 Return-Path: Delivered-To: freebsd-ports-bugs@smarthost.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id C3E07CE2 for ; Sat, 24 May 2014 05:40:00 +0000 (UTC) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:1900:2254:206c::16:87]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 9DD692B7A for ; Sat, 24 May 2014 05:40:00 +0000 (UTC) Received: from freefall.freebsd.org (localhost [127.0.0.1]) by freefall.freebsd.org (8.14.8/8.14.8) with ESMTP id s4O5e08m058519 for ; Sat, 24 May 2014 05:40:00 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.8/8.14.8/Submit) id s4O5e0IR058518; Sat, 24 May 2014 05:40:00 GMT (envelope-from gnats) Resent-Date: Sat, 24 May 2014 05:40:00 GMT Resent-Message-Id: <201405240540.s4O5e0IR058518@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, "Reed A. Cartwright" Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 16EBDCC7 for ; Sat, 24 May 2014 05:36:39 +0000 (UTC) Received: from herschel.biodesign.asu.edu (herschel.biodesign.asu.edu [129.219.237.213]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "herschel.biodesign.asu.edu", Issuer "herschel.biodesign.asu.edu" (not verified)) by mx1.freebsd.org (Postfix) with ESMTPS id E17062B6B for ; Sat, 24 May 2014 05:36:38 +0000 (UTC) Received: from herschel.biodesign.asu.edu (localhost [127.0.0.1]) by herschel.biodesign.asu.edu (8.14.7/8.14.7) with ESMTP id s4O5LmHL063081 (version=TLSv1/SSLv3 cipher=DHE-RSA-AES256-GCM-SHA384 bits=256 verify=NO) for ; Fri, 23 May 2014 22:21:48 -0700 (MST) (envelope-from reed@herschel.biodesign.asu.edu) Received: (from reed@localhost) by herschel.biodesign.asu.edu (8.14.7/8.14.7/Submit) id s4O5LmDM063080; Fri, 23 May 2014 22:21:48 -0700 (MST) (envelope-from reed) Message-Id: <201405240521.s4O5LmDM063080@herschel.biodesign.asu.edu> Date: Fri, 23 May 2014 22:21:48 -0700 (MST) From: "Reed A. Cartwright" Reply-To: "Reed A. Cartwright" To: FreeBSD-gnats-submit@freebsd.org X-Send-Pr-Version: 3.114 Subject: ports/190161: [maintainer-update] Add Options to biology/mafft X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 24 May 2014 05:40:00 -0000 >Number: 190161 >Category: ports >Synopsis: [maintainer-update] Add Options to biology/mafft >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Sat May 24 05:40:00 UTC 2014 >Closed-Date: >Last-Modified: >Originator: Reed A. Cartwright >Release: FreeBSD 10.0-RELEASE-p2 amd64 >Organization: ASU >Environment: System: FreeBSD herschel.biodesign.asu.edu 10.0-RELEASE-p2 FreeBSD 10.0-RELEASE-p2 #0: Tue Apr 29 17:06:01 UTC 2014 root@amd64-builder.daemonology.net:/usr/obj/usr/src/sys/GENERIC amd64 >Description: Revise the biology/mafft port to support DOCS and EXAMPLES options. >How-To-Repeat: >Fix: Apply the patch below --- mafft.diff begins here --- Index: Makefile =================================================================== --- Makefile (revision 354976) +++ Makefile (working copy) @@ -3,6 +3,7 @@ PORTNAME= mafft PORTVERSION= 7.149 +PORTREVISION= 1 CATEGORIES= biology MASTER_SITES= http://mafft.cbrc.jp/alignment/software/ DISTNAME= ${PORTNAME}-${PORTVERSION}-without-extensions-src @@ -13,6 +14,8 @@ LICENSE= BSD2CLAUSE +OPTIONS_DEFINE= DOCS EXAMPLES + WRKSRC= ${WRKDIR}/${PORTNAME}-${PORTVERSION}-without-extensions BUILD_WRKSRC= ${WRKSRC}/core --- mafft.diff ends here --- >Release-Note: >Audit-Trail: >Unformatted: