From owner-freebsd-questions@FreeBSD.ORG Sun Dec 8 17:58:24 2013 Return-Path: Delivered-To: freebsd-questions@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 1C869A97 for ; Sun, 8 Dec 2013 17:58:24 +0000 (UTC) Received: from smtp.infracaninophile.co.uk (smtp6.infracaninophile.co.uk [IPv6:2001:8b0:151:1:3cd3:cd67:fafa:3d78]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by mx1.freebsd.org (Postfix) with ESMTPS id B626F12EE for ; Sun, 8 Dec 2013 17:58:23 +0000 (UTC) Received: from seedling.black-earth.co.uk (seedling.black-earth.co.uk [81.2.117.99]) (authenticated bits=0) by smtp.infracaninophile.co.uk (8.14.7/8.14.7) with ESMTP id rB8HwG8v022991 (version=TLSv1/SSLv3 cipher=DHE-RSA-CAMELLIA256-SHA bits=256 verify=NO); Sun, 8 Dec 2013 17:58:17 GMT (envelope-from matthew@FreeBSD.org) DKIM-Filter: OpenDKIM Filter v2.8.3 smtp.infracaninophile.co.uk rB8HwG8v022991 Authentication-Results: smtp.infracaninophile.co.uk/rB8HwG8v022991; dkim=none reason="no signature"; dkim-adsp=none Message-ID: <52A4B32F.60505@FreeBSD.org> Date: Sun, 08 Dec 2013 17:58:07 +0000 From: Matthew Seaman User-Agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10.6; rv:24.0) Gecko/20100101 Thunderbird/24.1.1 MIME-Version: 1.0 To: james@mansionfamily.plus.com Subject: Re: Infinite pkg loop, was Re: pkg-ng problem, how do I recover? References: <529B4657.3040201@mansionfamily.plus.com> <529B7A6B.6020800@FreeBSD.org> <52A4AB38.1020505@mansionfamily.plus.com> In-Reply-To: <52A4AB38.1020505@mansionfamily.plus.com> X-Enigmail-Version: 1.6 Content-Type: multipart/signed; micalg=pgp-sha512; protocol="application/pgp-signature"; boundary="Row7AnSHphvuAglLWGUtKoU98GG7Ep1kI" X-Virus-Scanned: clamav-milter 0.98 at lucid-nonsense.infracaninophile.co.uk X-Virus-Status: Clean X-Spam-Status: No, score=-2.8 required=5.0 tests=ALL_TRUSTED,AWL,BAYES_00 autolearn=ham version=3.3.2 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on lucid-nonsense.infracaninophile.co.uk Cc: FreeBSD Mailing List X-BeenThere: freebsd-questions@freebsd.org X-Mailman-Version: 2.1.17 Precedence: list List-Id: User questions List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 08 Dec 2013 17:58:24 -0000 This is an OpenPGP/MIME signed message (RFC 4880 and 3156) --Row7AnSHphvuAglLWGUtKoU98GG7Ep1kI Content-Type: text/plain; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable On 08/12/2013 17:24, james wrote: > Thanks, I tried but when I do the original problem persists: >=20 > root@nas:~ # pkg upgrade > Updating repository catalogue > digests.txz 100% > 1092KB 1.1MB/s 1.1MB/s 00:01 > packagesite.txz 100% > 5877KB 1.9MB/s 1.4MB/s 00:03 > pkg: Skipping malformed dependency docbook-xml > pkg: Skipping malformed dependency docbook > pkg: Skipping malformed dependency docbook-xml > pkg: Skipping malformed dependency docbook > pkg: Skipping malformed dependency docbook-xml > pkg: Skipping malformed dependency docbook > pkg: Skipping malformed dependency docbook-xml > pkg: Skipping malformed dependency docbook > pkg: Skipping malformed dependency docbook-xml > pkg: Skipping malformed dependency docbook > pkg: Skipping malformed dependency docbook-xml > pkg: Skipping malformed dependency docbook > pkg: Skipping malformed dependency docbook-xml > pkg: Skipping malformed dependency docbook > pkg: Skipping malformed dependency docbook-xml > pkg: Skipping malformed dependency docbook > pkg: Skipping malformed dependency docbook-xml > pkg: Skipping malformed dependency docbook >=20 > and so on, until I press Ctrl-C. And then then retry gives: >=20 > root@nas:~ # pkg upgrade > Updating repository catalogue > pkg: sqlite: database disk image is malformed (pkgdb.c:3069) > pkg: Unable to query repository > root@nas:~ # >=20 > pkg info thinks I don't have docbook or docbook-xml installed. >=20 > Any ideas what I should do now? >=20 > Its entirely repeatable if I delete the repo sqlite. Hmmm... See the discussion here: https://github.com/freebsd/pkg/issues/633 What happens if you: * rm /var/db/pkg/repo-*.sqlite * pkg upgrade and then just leave it to churn for a long time? It /should/ eventually finish and do something reasonable. Hitting Ctrl-C on pkg(8) doesn't tend to end well at the moment, so avoid it as far as possible. Cheers, Matthew --=20 Dr Matthew J Seaman MA, D.Phil. PGP: http://www.infracaninophile.co.uk/pgpkey --Row7AnSHphvuAglLWGUtKoU98GG7Ep1kI Content-Type: application/pgp-signature; name="signature.asc" Content-Description: OpenPGP digital signature Content-Disposition: attachment; filename="signature.asc" -----BEGIN PGP SIGNATURE----- Version: GnuPG/MacGPG2 v2.0.20 (Darwin) Comment: Using GnuPG with Thunderbird - http://www.enigmail.net/ iQJ8BAEBCgBmBQJSpLM4XxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQ2NTNBNjhCOTEzQTRFNkNGM0UxRTEzMjZC QjIzQUY1MThFMUE0MDEzAAoJELsjr1GOGkATDKIP/ie/QWB2f1y8xk0fO8D/K72B FJpiWt4gFlHWTrLBfG+0+6WRHK64aMgf3TN09kEpaOsnSy5POFnwRHk5upJjrECa /E/kPGYM8Nhq8+F20mW4dFQasn3YMENaxeUKr8GWnqzc7hvFXHxC1halKX3pZap7 zvq040npQ3hOdpJ1t9eJHlRqvb8/F3dBrTKM/HufSmjHg4flS3DatVfktH1nCkUw mwNN/uImlifFabzq4QdGQiv66x475zPzZvbNVu58Saw483tCkdL/YfzmuM27detB Y7TFaq8g9zVyfjHjKU74aj2NFpPxn71+2mj3VD1QzHm3Rm0VmrlxeklQ7e3E3kFR X3T8hVnJsrxelbthjApl1T6WEpDaTn0IS5PhJ43EghIYko1fqkbDavSJEw1o4khm bLFVp/gG/uS6YwhdXrjHaR07pWyFz9t/3/EmGQ/Cm0vsvu8LmoHj1LMFzv2HKmnS /ubObKN0BPWmHKsFn+03BdN4OpbocGAI4Ij35DvAg8Ji44QgIZ1vtgK9vlPSORNd pmPvk89F2HomvW105dKMcjJnewPT1Uu0QP/fwSenl7pa98C73bWcvZO8fojycwC6 zdBPdpkO4Eo7B25batJZA+161O31E550Wh7ErnzEuihOX79u/KtBaAACOBd//j01 +dnhixDsDx8OioT1Um8R =SPou -----END PGP SIGNATURE----- --Row7AnSHphvuAglLWGUtKoU98GG7Ep1kI--