From owner-freebsd-ports-bugs@FreeBSD.ORG Tue Jul 17 00:00:25 2012 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [69.147.83.52]) by hub.freebsd.org (Postfix) with ESMTP id 88004106566B for ; Tue, 17 Jul 2012 00:00:25 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id 5D3F08FC15 for ; Tue, 17 Jul 2012 00:00:25 +0000 (UTC) Received: from freefall.freebsd.org (localhost [127.0.0.1]) by freefall.freebsd.org (8.14.5/8.14.5) with ESMTP id q6H00PA2004326 for ; Tue, 17 Jul 2012 00:00:25 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.5/8.14.5/Submit) id q6H00Px3004325; Tue, 17 Jul 2012 00:00:25 GMT (envelope-from gnats) Resent-Date: Tue, 17 Jul 2012 00:00:25 GMT Resent-Message-Id: <201207170000.q6H00Px3004325@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Jason Bacon Received: from mx1.freebsd.org (mx1.freebsd.org [69.147.83.52]) by hub.freebsd.org (Postfix) with ESMTP id 2CDF2106566B for ; Mon, 16 Jul 2012 23:58:34 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from red.freebsd.org (red.freebsd.org [IPv6:2001:4f8:fff6::22]) by mx1.freebsd.org (Postfix) with ESMTP id F1DB88FC12 for ; Mon, 16 Jul 2012 23:58:33 +0000 (UTC) Received: from red.freebsd.org (localhost [127.0.0.1]) by red.freebsd.org (8.14.4/8.14.4) with ESMTP id q6GNwX6t022095 for ; Mon, 16 Jul 2012 23:58:33 GMT (envelope-from nobody@red.freebsd.org) Received: (from nobody@localhost) by red.freebsd.org (8.14.4/8.14.4/Submit) id q6GNwXNH022094; Mon, 16 Jul 2012 23:58:33 GMT (envelope-from nobody) Message-Id: <201207162358.q6GNwXNH022094@red.freebsd.org> Date: Mon, 16 Jul 2012 23:58:33 GMT From: Jason Bacon To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-3.1 Cc: Subject: ports/169925: Maintainer update: science/minc2 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 17 Jul 2012 00:00:25 -0000 >Number: 169925 >Category: ports >Synopsis: Maintainer update: science/minc2 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Tue Jul 17 00:00:24 UTC 2012 >Closed-Date: >Last-Modified: >Originator: Jason Bacon >Release: 9.0-RELEASE >Organization: Acadix Consulting, LLC >Environment: FreeBSD sculpin.jbacon.dyndns.org 9.0-RELEASE FreeBSD 9.0-RELEASE #0: Tue Jan 3 07:46:30 UTC 2012 root@farrell.cse.buffalo.edu:/usr/obj/usr/src/sys/GENERIC amd64 >Description: Routine upgrade, add conflicts. >How-To-Repeat: >Fix: Diff attached. Patch attached with submission follows: diff -ruN --exclude=CVS /usr/ports/science/minc2/Makefile /home/bacon/Prog/Ports/ports/science/minc2/Makefile --- /usr/ports/science/minc2/Makefile 2011-09-23 17:25:07.000000000 -0500 +++ /home/bacon/Prog/Ports/ports/science/minc2/Makefile 2012-07-15 13:55:48.000000000 -0500 @@ -16,25 +16,23 @@ # Of course, the netcdf port must be installed first. PORTNAME= minc -PORTVERSION= 2.0.09 -PORTREVISION= 1 +PORTVERSION= 2.0.18 CATEGORIES= science biology -MASTER_SITES= http://www.bic.mni.mcgill.ca/users/bert/ \ - http://www.neuro.mcw.edu/~bacon/Ports/distfiles/ +MASTER_SITES= http://www.nitrc.org/frs/download.php/801/ MAINTAINER= jwbacon@tds.net COMMENT= Medical Imaging NetCDF LIB_DEPENDS= netcdf.4:${PORTSDIR}/science/netcdf \ - hdf5.0:${PORTSDIR}/science/hdf5 + hdf5:${PORTSDIR}/science/hdf5 USE_AUTOTOOLS= libtool USE_LDCONFIG= yes -CPPFLAGS+= ${PTHREAD_CFLAGS} -I${LOCALBASE}/include +CPPFLAGS+= ${PTHREAD_CFLAGS} -I${LOCALBASE}/include -DH5_USE_16_API LDFLAGS+= -L${LOCALBASE}/lib ${PTHREAD_LIBS} CONFIGURE_ARGS= --enable-shared=yes --enable-static=yes -CONFLICTS= minc-1* +CONFLICTS= minc-1* zh-tk-[0-9]* LATEST_LINK= minc2 MAN1= dcm2mnc.1 \ @@ -71,9 +69,12 @@ rawtominc.1 \ transformtags.1 \ upet2mnc.1 \ + vff2mnc.1 \ voxeltoworld.1 \ xfmconcat.1 \ + xfmflip.1 \ xfminvert.1 + MAN3= ParseArgv.3 post-install: diff -ruN --exclude=CVS /usr/ports/science/minc2/distinfo /home/bacon/Prog/Ports/ports/science/minc2/distinfo --- /usr/ports/science/minc2/distinfo 2011-07-03 08:22:19.000000000 -0500 +++ /home/bacon/Prog/Ports/ports/science/minc2/distinfo 2012-07-15 13:55:58.000000000 -0500 @@ -1,2 +1,2 @@ -SHA256 (minc-2.0.09.tar.gz) = b55907a5dd26c1b98b39f6cb81133336d7c794d4f7d4ad38b02561a9cc489390 -SIZE (minc-2.0.09.tar.gz) = 1418085 +SHA256 (minc-2.0.18.tar.gz) = 674cc89c43edfdb1957251c0124ea83252740c667cf3c4d9fc6183dcdb10f3e5 +SIZE (minc-2.0.18.tar.gz) = 1628038 diff -ruN --exclude=CVS /usr/ports/science/minc2/pkg-plist /home/bacon/Prog/Ports/ports/science/minc2/pkg-plist --- /usr/ports/science/minc2/pkg-plist 2006-04-30 07:05:08.000000000 -0500 +++ /home/bacon/Prog/Ports/ports/science/minc2/pkg-plist 2012-07-15 13:54:41.000000000 -0500 @@ -33,9 +33,11 @@ bin/rawtominc bin/transformtags bin/upet2mnc +bin/vff2mnc bin/voxeltoworld bin/worldtovoxel bin/xfmconcat +bin/xfmflip bin/xfminvert include/ParseArgv.h include/minc.h >Release-Note: >Audit-Trail: >Unformatted: