From owner-freebsd-ports-bugs@FreeBSD.ORG Mon Aug 27 12:10:05 2012 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 2853D1065675 for ; Mon, 27 Aug 2012 12:10:05 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id F41408FC17 for ; Mon, 27 Aug 2012 12:10:04 +0000 (UTC) Received: from freefall.freebsd.org (localhost [127.0.0.1]) by freefall.freebsd.org (8.14.5/8.14.5) with ESMTP id q7RCA4WV099209 for ; Mon, 27 Aug 2012 12:10:04 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.5/8.14.5/Submit) id q7RCA4jx099208; Mon, 27 Aug 2012 12:10:04 GMT (envelope-from gnats) Resent-Date: Mon, 27 Aug 2012 12:10:04 GMT Resent-Message-Id: <201208271210.q7RCA4jx099208@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Wen Heping Received: from mx1.freebsd.org (mx1.freebsd.org [69.147.83.52]) by hub.freebsd.org (Postfix) with ESMTP id 004991065676 for ; Mon, 27 Aug 2012 12:02:08 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from red.freebsd.org (red.freebsd.org [IPv6:2001:4f8:fff6::22]) by mx1.freebsd.org (Postfix) with ESMTP id DE7E18FC31 for ; Mon, 27 Aug 2012 12:02:08 +0000 (UTC) Received: from red.freebsd.org (localhost [127.0.0.1]) by red.freebsd.org (8.14.4/8.14.4) with ESMTP id q7RC281q034532 for ; Mon, 27 Aug 2012 12:02:08 GMT (envelope-from nobody@red.freebsd.org) Received: (from nobody@localhost) by red.freebsd.org (8.14.4/8.14.4/Submit) id q7RC28wD034531; Mon, 27 Aug 2012 12:02:08 GMT (envelope-from nobody) Message-Id: <201208271202.q7RC28wD034531@red.freebsd.org> Date: Mon, 27 Aug 2012 12:02:08 GMT From: Wen Heping To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-3.1 Cc: Subject: ports/171115: [Update]biology/py-biopython:update to 1.60 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 27 Aug 2012 12:10:05 -0000 >Number: 171115 >Category: ports >Synopsis: [Update]biology/py-biopython:update to 1.60 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: update >Submitter-Id: current-users >Arrival-Date: Mon Aug 27 12:10:04 UTC 2012 >Closed-Date: >Last-Modified: >Originator: Wen Heping >Release: FreeBSD-Head >Organization: FreeBSD >Environment: >Description: - Update to 1.60 >How-To-Repeat: >Fix: --- Makefile.orig 2012-08-27 15:39:19.000000000 +0800 +++ Makefile 2012-08-27 11:29:53.000000000 +0800 @@ -2,11 +2,11 @@ # Date created: 28 July 2000 # Whom: Johann Visagie # -# $FreeBSD: head/biology/py-biopython/Makefile 300895 2012-07-14 12:56:14Z beat $ +# $FreeBSD: ports/biology/py-biopython/Makefile,v 1.33 2012/03/06 06:40:50 wen Exp $ # PORTNAME= biopython -PORTVERSION= 1.59 +PORTVERSION= 1.60 CATEGORIES= biology python MASTER_SITES= http://www.biopython.org/DIST/ PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} --- distinfo.orig 2012-08-27 15:39:19.000000000 +0800 +++ distinfo 2012-08-27 11:30:11.000000000 +0800 @@ -1,2 +1,2 @@ -SHA256 (biopython-1.59.tar.gz) = 588abf55de3d8e4deac611a0f810a9c5d9ce7e5868d3064f79efe6cabd18cacb -SIZE (biopython-1.59.tar.gz) = 8577492 +SHA256 (biopython-1.60.tar.gz) = 73a2e6d700c8735832b6fc15dd08a9baa4136b072ff18760b9d22f563579d733 +SIZE (biopython-1.60.tar.gz) = 9501707 --- pkg-plist.orig 2012-08-27 15:39:19.000000000 +0800 +++ pkg-plist 2012-08-27 19:26:03.000000000 +0800 @@ -1,12 +1,3 @@ -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/_py3k.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/_py3k.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/_py3k.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/cpairwise2.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/cpairwise2.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/cpairwise2.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/trie.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/trie.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/trie.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Affy/CelFile.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Affy/CelFile.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Affy/CelFile.pyo @@ -46,9 +37,6 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Align/Generic.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Align/Generic.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Align/Generic.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Align/__init__.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Align/__init__.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Align/__init__.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/AlignIO/ClustalIO.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/AlignIO/ClustalIO.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/AlignIO/ClustalIO.pyo @@ -73,6 +61,9 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/AlignIO/__init__.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/AlignIO/__init__.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/AlignIO/__init__.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Align/__init__.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Align/__init__.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Align/__init__.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Alphabet/IUPAC.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Alphabet/IUPAC.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Alphabet/IUPAC.pyo @@ -109,13 +100,13 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/CAPS/__init__.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/CAPS/__init__.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/CAPS/__init__.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Cluster/__init__.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Cluster/__init__.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Cluster/__init__.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Cluster/cluster.so %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Cluster/cluster.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Cluster/cluster.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Cluster/cluster.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Cluster/cluster.so +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Cluster/__init__.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Cluster/__init__.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Cluster/__init__.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Compass/__init__.py @@ -238,8 +229,8 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Entrez/DTDs/link.ent %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Entrez/DTDs/list.ent %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Entrez/DTDs/math.ent -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Entrez/DTDs/mathml2-qname-1.mod %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Entrez/DTDs/mathml2.dtd +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Entrez/DTDs/mathml2-qname-1.mod %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Entrez/DTDs/mathmlsetup.ent %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Entrez/DTDs/mmlalias.ent %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Entrez/DTDs/mmlextra.ent @@ -301,21 +292,21 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/FSSP/FSSPTools.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/FSSP/FSSPTools.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/FSSP/FSSPTools.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/FSSP/__init__.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/FSSP/__init__.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/FSSP/__init__.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/FSSP/fssp_rec.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/FSSP/fssp_rec.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/FSSP/fssp_rec.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/FSSP/__init__.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/FSSP/__init__.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/FSSP/__init__.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/File.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/File.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/File.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GA/Crossover/General.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GA/Crossover/General.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GA/Crossover/General.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GA/Crossover/GeneralPoint.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GA/Crossover/GeneralPoint.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GA/Crossover/GeneralPoint.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GA/Crossover/General.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GA/Crossover/General.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GA/Crossover/General.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GA/Crossover/Point.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GA/Crossover/Point.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GA/Crossover/Point.pyo @@ -367,15 +358,15 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GA/__init__.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GA/__init__.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GA/__init__.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GenBank/__init__.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GenBank/__init__.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GenBank/__init__.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GenBank/Record.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GenBank/Record.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GenBank/Record.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GenBank/Scanner.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GenBank/__init__.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GenBank/__init__.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GenBank/__init__.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GenBank/utils.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GenBank/utils.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/GenBank/utils.pyo @@ -412,18 +403,18 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_Diagram.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_Diagram.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_Diagram.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_Feature.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_Feature.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_Feature.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_FeatureSet.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_FeatureSet.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_FeatureSet.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_Graph.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_Graph.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_Graph.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_Feature.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_Feature.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_Feature.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_GraphSet.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_GraphSet.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_GraphSet.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_Graph.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_Graph.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_Graph.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_LinearDrawer.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_LinearDrawer.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Graphics/GenomeDiagram/_LinearDrawer.pyo @@ -457,13 +448,13 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Index.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Index.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Index.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/KDTree/KDTree.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/KDTree/KDTree.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/KDTree/KDTree.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/KDTree/_CKDTree.so %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/KDTree/_CKDTree.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/KDTree/_CKDTree.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/KDTree/_CKDTree.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/KDTree/_CKDTree.so +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/KDTree/KDTree.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/KDTree/KDTree.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/KDTree/KDTree.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/KDTree/__init__.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/KDTree/__init__.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/KDTree/__init__.pyo @@ -491,15 +482,15 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Medline/__init__.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Medline/__init__.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Medline/__init__.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/_pwm.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/_pwm.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/_pwm.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/Applications/_AlignAce.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/Applications/_AlignAce.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/Applications/_AlignAce.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/Applications/__init__.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/Applications/__init__.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/Applications/__init__.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/_Motif.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/_Motif.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/_Motif.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/Parsers/AlignAce.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/Parsers/AlignAce.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/Parsers/AlignAce.pyo @@ -515,12 +506,12 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/Thresholds.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/Thresholds.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/Thresholds.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/_Motif.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/_Motif.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/_Motif.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/__init__.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/__init__.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/__init__.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/_pwm.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/_pwm.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/_pwm.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Motif/_pwm.so %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/NMR/NOEtools.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/NMR/NOEtools.pyc @@ -576,40 +567,13 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Nexus/Trees.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Nexus/Trees.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Nexus/Trees.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Nexus/__init__.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Nexus/__init__.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Nexus/__init__.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Nexus/cnexus.so %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Nexus/cnexus.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Nexus/cnexus.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Nexus/cnexus.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/__init__.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/__init__.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/__init__.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/_parse_baseml.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/_parse_baseml.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/_parse_baseml.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/_parse_codeml.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/_parse_codeml.pyc 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-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/codeml.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/codeml.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/codeml.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/yn00.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/yn00.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/yn00.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Nexus/cnexus.so +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Nexus/__init__.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Nexus/__init__.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Nexus/__init__.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/AbstractPropertyMap.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/AbstractPropertyMap.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/AbstractPropertyMap.pyo @@ -667,24 +631,24 @@ 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-%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/Structure.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/Structure.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/Structure.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/StructureAlignment.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/StructureAlignment.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/StructureAlignment.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/StructureBuilder.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/StructureBuilder.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/StructureBuilder.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/Structure.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/Structure.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/Structure.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/Superimposer.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/Superimposer.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/Superimposer.pyo @@ -694,6 +658,10 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/__init__.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/__init__.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/__init__.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/mmCIF/MMCIFlex.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/mmCIF/MMCIFlex.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/mmCIF/MMCIFlex.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/mmCIF/MMCIFlex.so %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/mmCIF/__init__.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/mmCIF/__init__.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PDB/mmCIF/__init__.pyo @@ -718,30 +686,60 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Pathway/__init__.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Pathway/__init__.pyc 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+%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/_parse_yn00.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/_parse_yn00.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/yn00.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/yn00.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PAML/yn00.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PhyloXMLIO.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PhyloXMLIO.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PhyloXMLIO.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PhyloXML.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PhyloXML.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/PhyloXML.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/__init__.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/__init__.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Phylo/__init__.pyo @@ -802,9 +800,6 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PopGen/SimCoal/Template.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PopGen/SimCoal/Template.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PopGen/SimCoal/Template.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PopGen/SimCoal/__init__.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PopGen/SimCoal/__init__.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PopGen/SimCoal/__init__.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PopGen/SimCoal/data/bottle.par %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PopGen/SimCoal/data/decline_lambda.par %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PopGen/SimCoal/data/decline_split.par @@ -815,6 +810,9 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PopGen/SimCoal/data/split_ssm_2d.par %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PopGen/SimCoal/data/ssm_1d.par %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PopGen/SimCoal/data/ssm_2d.par +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PopGen/SimCoal/__init__.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PopGen/SimCoal/__init__.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PopGen/SimCoal/__init__.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PopGen/__init__.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PopGen/__init__.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/PopGen/__init__.pyo @@ -824,12 +822,12 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Restriction/RanaConfig.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Restriction/RanaConfig.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Restriction/RanaConfig.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Restriction/Restriction.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Restriction/Restriction.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Restriction/Restriction.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Restriction/Restriction_Dictionary.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Restriction/Restriction_Dictionary.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Restriction/Restriction_Dictionary.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Restriction/Restriction.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Restriction/Restriction.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Restriction/Restriction.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Restriction/_Update/RestrictionCompiler.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Restriction/_Update/RestrictionCompiler.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Restriction/_Update/RestrictionCompiler.pyo @@ -863,6 +861,24 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SCOP/__init__.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SCOP/__init__.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SCOP/__init__.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SCOP/three_to_one_dict.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SCOP/three_to_one_dict.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SCOP/three_to_one_dict.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/BioSeqDatabase.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/BioSeqDatabase.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/BioSeqDatabase.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/BioSeq.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/BioSeq.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/BioSeq.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/DBUtils.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/DBUtils.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/DBUtils.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/Loader.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/Loader.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/Loader.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/__init__.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/__init__.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/__init__.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SVDSuperimposer/SVDSuperimposer.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SVDSuperimposer/SVDSuperimposer.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SVDSuperimposer/SVDSuperimposer.pyo @@ -872,9 +888,6 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Search.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Search.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Search.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Seq.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Seq.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Seq.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqFeature.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqFeature.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqFeature.pyo @@ -920,45 +933,48 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqIO/UniprotIO.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqIO/UniprotIO.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqIO/UniprotIO.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqIO/__init__.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqIO/__init__.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqIO/__init__.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqIO/_convert.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqIO/_convert.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqIO/_convert.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqIO/_index.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqIO/_index.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqIO/_index.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqIO/__init__.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqIO/__init__.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqIO/__init__.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqRecord.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqRecord.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqRecord.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/CheckSum.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/CheckSum.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/CheckSum.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/CodonUsage.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/CodonUsage.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/CodonUsage.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/CodonUsageIndices.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/CodonUsageIndices.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/CodonUsageIndices.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/CodonUsage.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/CodonUsage.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/CodonUsage.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/IsoelectricPoint.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/IsoelectricPoint.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/IsoelectricPoint.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/MeltingTemp.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/MeltingTemp.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/MeltingTemp.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/ProtParam.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/ProtParam.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/ProtParam.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/ProtParamData.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/ProtParamData.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/ProtParamData.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/ProtParam.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/ProtParam.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/ProtParam.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/__init__.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/__init__.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/__init__.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/lcc.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/lcc.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils/lcc.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Seq.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Seq.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Seq.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Sequencing/Ace.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Sequencing/Ace.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Sequencing/Ace.pyo @@ -1004,44 +1020,47 @@ %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/UniGene/__init__.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/UniGene/__init__.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/UniGene/__init__.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Wise/__init__.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Wise/__init__.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Wise/__init__.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Wise/dnal.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Wise/dnal.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Wise/dnal.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Wise/__init__.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Wise/__init__.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Wise/__init__.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Wise/psw.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Wise/psw.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Wise/psw.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/bgzf.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/bgzf.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/bgzf.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/cpairwise2.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/cpairwise2.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/cpairwise2.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/cpairwise2.so %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/__init__.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/__init__.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/__init__.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/cpairwise2.so %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/kNN.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/kNN.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/kNN.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/pairwise2.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/pairwise2.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/pairwise2.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/trie.so +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/_py3k.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/_py3k.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/_py3k.pyo %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/triefind.py %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/triefind.pyc %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/triefind.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/BioSeq.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/BioSeq.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/BioSeq.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/BioSeqDatabase.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/BioSeqDatabase.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/BioSeqDatabase.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/DBUtils.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/DBUtils.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/DBUtils.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/Loader.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/Loader.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/Loader.pyo -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/__init__.py -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/__init__.pyc -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL/__init__.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/trie.py +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/trie.pyc +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/trie.pyo +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/trie.so +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/PKG-INFO +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/SOURCES.txt +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/dependency_links.txt +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/native_libs.txt +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/not-zip-safe +%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/top_level.txt @dirrm %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Affy @dirrm %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Align/Applications @dirrm %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Align @@ -1099,6 +1118,7 @@ @dirrm %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Restriction/_Update @dirrm %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Restriction @dirrm %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SCOP +@dirrm %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL @dirrm %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SVDSuperimposer @dirrm %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqIO @dirrm %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/SeqUtils @@ -1111,12 +1131,5 @@ @dirrm %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/UniGene @dirrm %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio/Wise @dirrm %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/Bio -@dirrm %%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/BioSQL -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/SOURCES.txt -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/PKG-INFO -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/dependency_links.txt -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/native_libs.txt -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/not-zip-safe -%%PYTHON_SITELIBDIR%%/%%PYEASYINSTALL_EGG%%/EGG-INFO/top_level.txt >Release-Note: >Audit-Trail: >Unformatted: