From owner-freebsd-ports-bugs@FreeBSD.ORG Tue Feb 25 18:10:02 2014 Return-Path: Delivered-To: freebsd-ports-bugs@smarthost.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 0314AB67 for ; Tue, 25 Feb 2014 18:10:02 +0000 (UTC) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:1900:2254:206c::16:87]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by mx1.freebsd.org (Postfix) with ESMTPS id D5C81164B for ; Tue, 25 Feb 2014 18:10:01 +0000 (UTC) Received: from freefall.freebsd.org (localhost [127.0.0.1]) by freefall.freebsd.org (8.14.7/8.14.7) with ESMTP id s1PIA1MT042286 for ; Tue, 25 Feb 2014 18:10:01 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.8/8.14.8/Submit) id s1PIA11p042285; Tue, 25 Feb 2014 18:10:01 GMT (envelope-from gnats) Resent-Date: Tue, 25 Feb 2014 18:10:01 GMT Resent-Message-Id: <201402251810.s1PIA11p042285@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, KATO Tsuguru Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 0BB066FF for ; Tue, 25 Feb 2014 18:00:26 +0000 (UTC) Received: from omta01.auone-net.jp (mail-or2-f145.auone-net.jp [111.87.219.145]) by mx1.freebsd.org (Postfix) with ESMTP id D45DA155F for ; Tue, 25 Feb 2014 18:00:25 +0000 (UTC) Received: from coppermine.my.domain (ZT028143.ppp.dion.ne.jp [59.128.28.143]) by omta01.auone-net.jp (au one net mail) with ESMTP id E65A6980008 for ; Wed, 26 Feb 2014 03:00:23 +0900 (JST) Message-Id: <20140226025203.e5d7cada62bd416b13276cb8@yahoo.com> Date: Wed, 26 Feb 2014 02:52:03 +0900 From: KATO Tsuguru To: FreeBSD-gnats-submit@FreeBSD.org Subject: ports/187041: biology/seaview: Update to version 4.4.3 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.17 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 25 Feb 2014 18:10:02 -0000 >Number: 187041 >Category: ports >Synopsis: biology/seaview: Update to version 4.4.3 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Tue Feb 25 18:10:01 UTC 2014 >Closed-Date: >Last-Modified: >Originator: KATO Tsuguru >Release: FreeBSD 8.4-RELEASE-p7 i386 >Organization: >Environment: >Description: - Update to version 4.4.3 >How-To-Repeat: >Fix: diff -urN /usr/ports/biology/seaview/Makefile biology/seaview/Makefile --- /usr/ports/biology/seaview/Makefile 2013-12-12 02:41:38.000000000 +0900 +++ biology/seaview/Makefile 2014-02-26 00:00:00.000000000 +0900 @@ -2,7 +2,7 @@ # $FreeBSD: head/biology/seaview/Makefile 336171 2013-12-11 14:43:51Z bapt $ PORTNAME= seaview -PORTVERSION= 4.4.2 +PORTVERSION= 4.4.3 PORTEPOCH= 1 CATEGORIES= biology MASTER_SITES= http://pbil.univ-lyon1.fr/software/seaview_data/archive/ @@ -13,14 +13,10 @@ LIB_DEPENDS= libfltk.so:${PORTSDIR}/x11-toolkits/fltk -OPTIONS_DEFINE= PDFLIB -OPTIONS_DEFAULT=PDFLIB -PDFLIB_DESC= PDFlib support - WRKSRC= ${WRKDIR}/${PORTNAME} +USES= gmake USE_XORG= xext xft xinerama -USE_GMAKE= yes MAKE_ENV= HELPFILE='-DDEFAULT_HELPFILE=\"${DATADIR}/seaview.html\"' \ PHYMLNAME='-DPHYMLNAME=\"phyml\"' \ IFLTK='-I${LOCALBASE}/include' \ @@ -29,21 +25,18 @@ OPT="${CFLAGS}" ALL_TARGET= ${PORTNAME} -PLIST_FILES= bin/seaview %%DATADIR%%/seaview.html +PLIST_FILES= bin/seaview man/man1/seaview.1.gz %%DATADIR%%/seaview.html PLIST_DIRS= %%DATADIR%% DESKTOP_ENTRIES="SeaView" "${COMMENT}" "" \ "${PORTNAME}" "Biology;Science;" "true" -NO_STAGE= yes -.include - -.if ${PORT_OPTIONS:MPDFLIB} -LIB_DEPENDS+= libpdf.so:${PORTSDIR}/print/pdflib -MAKE_ENV+= LPDF='-L${LOCALBASE}/lib -lpdf' -.else -MAKE_ENV+= PDF_PS_FLAGS='-DNO_PDF' -.endif +OPTIONS_DEFINE= PDFLIB +OPTIONS_DEFAULT= PDFLIB +PDFLIB_DESC= PDFlib support +PDFLIB_LIB_DEPENDS= libpdf.so:${PORTSDIR}/print/pdflib +PDFLIB_MAKE_ENV= LPDF='-L${LOCALBASE}/lib -lpdf' +PDFLIB_MAKE_ENV_OFF= PDF_PS_FLAGS='-DNO_PDF' post-patch: @${REINPLACE_CMD} -e \ @@ -56,8 +49,12 @@ s|-lpthread|-pthread|' ${WRKSRC}/Makefile do-install: - (cd ${WRKSRC} && ${INSTALL_PROGRAM} seaview ${PREFIX}/bin) - @${MKDIR} ${DATADIR} - (cd ${WRKSRC} && ${INSTALL_DATA} seaview.html ${DATADIR}) + (cd ${WRKSRC} && ${INSTALL_PROGRAM} seaview \ + ${STAGEDIR}${PREFIX}/bin) + (cd ${WRKSRC} && ${INSTALL_MAN} seaview.1 \ + ${STAGEDIR}${MANPREFIX}/man/man1) + @${MKDIR} ${STAGEDIR}${DATADIR} + (cd ${WRKSRC} && ${INSTALL_DATA} seaview.html \ + ${STAGEDIR}${DATADIR}) .include diff -urN /usr/ports/biology/seaview/distinfo biology/seaview/distinfo --- /usr/ports/biology/seaview/distinfo 2013-11-06 22:05:44.000000000 +0900 +++ biology/seaview/distinfo 2014-02-26 00:00:00.000000000 +0900 @@ -1,2 +1,2 @@ -SHA256 (seaview_4.4.2.tar.gz) = 8f51c865556d447d34e5a1e2e9760fc309e9ca62b4ac43ea3e0aa648b5972800 -SIZE (seaview_4.4.2.tar.gz) = 323856 +SHA256 (seaview_4.4.3.tar.gz) = cf547cd5d81b85da3bf5c9446c514250d2253714ad66cabbeaa320f416e79d43 +SIZE (seaview_4.4.3.tar.gz) = 325513 >Release-Note: >Audit-Trail: >Unformatted: