From owner-freebsd-pkg-fallout@freebsd.org Tue Mar 29 11:30:29 2016 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 779D8AE2B1C for ; Tue, 29 Mar 2016 11:30:29 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id 669641F2A for ; Tue, 29 Mar 2016 11:30:29 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id 6223AAE2B1B; Tue, 29 Mar 2016 11:30:29 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 61B74AE2B1A for ; Tue, 29 Mar 2016 11:30:29 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy7.nyi.freebsd.org (beefy7.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:ea]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 328DA1F29 for ; Tue, 29 Mar 2016 11:30:29 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy7.nyi.freebsd.org (localhost [127.0.0.1]) by beefy7.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id u2TBUSQN061652 for ; Tue, 29 Mar 2016 11:30:28 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy7.nyi.freebsd.org (8.15.2/8.15.2/Submit) id u2TBUSSJ061651; Tue, 29 Mar 2016 11:30:28 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Tue, 29 Mar 2016 11:30:28 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201603291130.u2TBUSSJ061651@beefy7.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - head-mips-default][biology/plinkseq] Failed for plinkseq-0.10 in build X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.21 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 29 Mar 2016 11:30:29 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: bacon4000@gmail.com Last committer: miwi@FreeBSD.org Ident: $FreeBSD: head/biology/plinkseq/Makefile 403506 2015-12-11 08:48:56Z miwi $ Log URL: http://beefy7.nyi.freebsd.org/data/head-mips-default/p411721_s297210/logs/plinkseq-0.10.log Build URL: http://beefy7.nyi.freebsd.org/build.html?mastername=head-mips-default&build=p411721_s297210 Log: ====>> Building biology/plinkseq build started at Tue Mar 29 10:25:48 UTC 2016 port directory: /usr/ports/biology/plinkseq building for: FreeBSD head-mips-default-job-05 11.0-CURRENT FreeBSD 11.0-CURRENT r297210 mips maintained by: bacon4000@gmail.com Makefile ident: $FreeBSD: head/biology/plinkseq/Makefile 403506 2015-12-11 08:48:56Z miwi $ Poudriere version: 3.1.12 Host OSVERSION: 1100100 Jail OSVERSION: 1100104 !!! Jail is newer than host. (Jail: 1100104, Host: 1100100) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=mips UNAME_m=mips ABI_FILE=/usr/lib/crt1.o UNAME_v=FreeBSD 11.0-CURRENT r297210 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=mips LINUX_OSRELEASE=2.6.32 SAVED_TERM=screen QEMU_EMULATING=1 MASTERMNT=/usr/local/poudriere/data/.m/head-mips-default/ref UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=plinkseq-0.10 OSREL=11.0 _OSRELEASE=11.0-CURRENT PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=24 PWD=/usr/local/poudriere/data/.m/head-mips-default/ref/.p/pool MASTERNAME=head-mips-default SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.12 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1100104 ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/plinkseq/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/plinkseq/work HOME=/wrkdirs/usr/ports/biology/plinkseq/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/plinkseq/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/plinkseq/work HOME=/wrkdirs/usr/ports/biology/plinkseq/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/plinkseq" EXAMPLESDIR="share/examples/plinkseq" DATADIR="share/plinkseq" WWWDIR="www/plinkseq" ETCDIR="etc/plinkseq" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/plinkseq DOCSDIR=/usr/local/share/doc/plinkseq EXAMPLESDIR=/usr/local/share/examples/plinkseq WWWDIR=/usr/local/www/plinkseq ETCDIR=/usr/local/etc/plinkseq --End SUB_LIST-- ---Begin make.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for plinkseq-0.10 =========================================================================== =================================================== ===> Building for plinkseq-0.10 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10' config_rules.Makefile:71: build/execs/pdas.dep: No such file or directory config_rules.Makefile:71: build/execs/mongoose.dep: No such file or directory config_rules.Makefile:71: build/execs/tab2vcf.dep: No such file or directory config_rules.Makefile:71: build/execs/smp.dep: No such file or directory config_rules.Makefile:71: build/execs/mm.dep: No such file or directory config_rules.Makefile:71: build/execs/behead.dep: No such file or directory config_rules.Makefile:71: build/execs/browser.dep: No such file or directory config_rules.Makefile:71: build/execs/gcol.dep: No such file or directory config_rules.Makefile:71: build/execs/pseq.dep: No such file or directory mkdir -p build/lib mkdir -p build/execs making depend sources/execs/pseq.cpp making depend sources/execs/gcol.cpp making depend sources/execs/browser.cpp making depend sources/execs/behead.cpp making depend sources/execs/mm.cpp making depend sources/execs/smp.cpp making depend sources/execs/tab2vcf.cpp making depend sources/execs/mongoose.cpp making depend sources/execs/pdas.cpp /usr/local/bin/gmake ./sources/plinkseq ./sources/pseq ./sources/util ./sources/mongoose ./sources/browser ./sources/pdas ./sources/ext gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10' /usr/local/bin/gmake DBGCXXFLAGS="" USE_DEBUG="" -C sources/plinkseq gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/plinkseq' ./../config_rules.Makefile:71: build/lib/bgzf.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/bcf.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/sqlwrap.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/defs.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/meta.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/refdb.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/fisher.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/token.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/regions.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/mask.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/gstore.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/matrix_exponential.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/protdb.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/vcfz.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/vgroup.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/vardb.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/output.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/svar.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/variant.pb.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/phmap.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/prob.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/glm.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/helper.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/permute.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/netdb.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/zfstream.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/vcfiterate.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/bed.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/em.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/crandom.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/iterate.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/annot.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/individual.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/indmap.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/varfunc.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/variant.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/dose.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/c8lib.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/segments.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/matdb.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/matrix.pb.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/eval.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/inddb.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/dcdflib.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/globals.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/varmeta.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/vcf.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/locdb.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/allele.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/matrix.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/filemap.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/netfunc.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/statistics.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/r8lib.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/reffuncs.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/genotype.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/seqdb.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/network.dep: No such file or directory ./../config_rules.Makefile:71: build/lib/sqlite3.dep: No such file or directory mkdir -p build/lib making depend sources/lib/sqlite3.c making depend sources/lib/network.cpp making depend sources/lib/seqdb.cpp making depend sources/lib/genotype.cpp making depend sources/lib/reffuncs.cpp making depend sources/lib/r8lib.cpp making depend sources/lib/statistics.cpp making depend sources/lib/netfunc.cpp making depend sources/lib/filemap.cpp making depend sources/lib/matrix.cpp making depend sources/lib/allele.cpp making depend sources/lib/locdb.cpp making depend sources/lib/vcf.cpp making depend sources/lib/varmeta.cpp making depend sources/lib/globals.cpp making depend sources/lib/dcdflib.cpp making depend sources/lib/inddb.cpp making depend sources/lib/eval.cpp making depend sources/lib/matrix.pb.cpp In file included from ../ext/sources/include/google/protobuf/stubs/atomicops.h:59, from ../ext/sources/include/google/protobuf/stubs/once.h:81, from sources/lib/matrix.pb.cpp:10: ./ext/sources/include/google/protobuf/stubs/platform_macros.h:61:2: error: #error Host architecture was not detected as supported by protobuf making depend sources/lib/matdb.cpp making depend sources/lib/segments.cpp making depend sources/lib/c8lib.cpp making depend sources/lib/dose.cpp making depend sources/lib/variant.cpp making depend sources/lib/varfunc.cpp making depend sources/lib/indmap.cpp making depend sources/lib/individual.cpp making depend sources/lib/annot.cpp making depend sources/lib/iterate.cpp making depend sources/lib/crandom.cpp making depend sources/lib/em.cpp making depend sources/lib/bed.cpp making depend sources/lib/vcfiterate.cpp making depend sources/lib/zfstream.cpp making depend sources/lib/netdb.cpp making depend sources/lib/permute.cpp making depend sources/lib/helper.cpp making depend sources/lib/glm.cpp making depend sources/lib/prob.cpp making depend sources/lib/phmap.cpp making depend sources/lib/variant.pb.cpp In file included from ../ext/sources/include/google/protobuf/stubs/atomicops.h:59, from ../ext/sources/include/google/protobuf/stubs/once.h:81, from sources/lib/variant.pb.cpp:10: ./ext/sources/include/google/protobuf/stubs/platform_macros.h:61:2: error: #error Host architecture was not detected as supported by protobuf making depend sources/lib/svar.cpp making depend sources/lib/output.cpp making depend sources/lib/vardb.cpp making depend sources/lib/vgroup.cpp making depend sources/lib/vcfz.cpp making depend sources/lib/protdb.cpp making depend sources/lib/matrix_exponential.cpp making depend sources/lib/gstore.cpp making depend sources/lib/mask.cpp making depend sources/lib/regions.cpp making depend sources/lib/token.cpp making depend sources/lib/fisher.cpp making depend sources/lib/refdb.cpp making depend sources/lib/meta.cpp making depend sources/lib/defs.cpp making depend sources/lib/sqlwrap.cpp making depend sources/lib/bcf.cpp making depend sources/lib/bgzf.cpp /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/bgzf.cpp -o build/lib/bgzf.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/bcf.cpp -o build/lib/bcf.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/sqlwrap.cpp -o build/lib/sqlwrap.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/defs.cpp -o build/lib/defs.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/meta.cpp -o build/lib/meta.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/refdb.cpp -o build/lib/refdb.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/fisher.cpp -o build/lib/fisher.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/token.cpp -o build/lib/token.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/regions.cpp -o build/lib/regions.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/mask.cpp -o build/lib/mask.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/gstore.cpp -o build/lib/gstore.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/matrix_exponential.cpp -o build/lib/matrix_exponential.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/protdb.cpp -o build/lib/protdb.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/vcfz.cpp -o build/lib/vcfz.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/vgroup.cpp -o build/lib/vgroup.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/vardb.cpp -o build/lib/vardb.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/output.cpp -o build/lib/output.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/svar.cpp -o build/lib/svar.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/variant.pb.cpp -o build/lib/variant.pb.o In file included from ../ext/sources/include/google/protobuf/stubs/atomicops.h:59, from ../ext/sources/include/google/protobuf/stubs/once.h:81, from sources/lib/variant.pb.cpp:10: ./ext/sources/include/google/protobuf/stubs/platform_macros.h:61:2: error: #error Host architecture was not detected as supported by protobuf In file included from ../ext/sources/include/google/protobuf/stubs/once.h:81, from sources/lib/variant.pb.cpp:10: ./ext/sources/include/google/protobuf/stubs/atomicops.h:188: error: stray '#' in program ./ext/sources/include/google/protobuf/stubs/atomicops.h:188: error: expected constructor, destructor, or type conversion before string constant ./../config_rules.Makefile:16: recipe for target 'build/lib/variant.pb.o' failed gmake[3]: *** [build/lib/variant.pb.o] Error 1 gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/plinkseq' Makefile:170: recipe for target 'sources/plinkseq' failed gmake[2]: *** [sources/plinkseq] Error 2 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10' Makefile:165: recipe for target 'all' failed gmake[1]: *** [all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10' *** Error code 1 Stop. make: stopped in /usr/ports/biology/plinkseq