From owner-freebsd-ports-bugs@FreeBSD.ORG Thu Aug 20 12:30:06 2009 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 0B7741065690 for ; Thu, 20 Aug 2009 12:30:06 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id D76358FC6F for ; Thu, 20 Aug 2009 12:30:05 +0000 (UTC) Received: from freefall.freebsd.org (gnats@localhost [127.0.0.1]) by freefall.freebsd.org (8.14.3/8.14.3) with ESMTP id n7KCU5DC085386 for ; Thu, 20 Aug 2009 12:30:05 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.3/8.14.3/Submit) id n7KCU5f0085383; Thu, 20 Aug 2009 12:30:05 GMT (envelope-from gnats) Resent-Date: Thu, 20 Aug 2009 12:30:05 GMT Resent-Message-Id: <200908201230.n7KCU5f0085383@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Fernan Aguero Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id B3136106568C for ; Thu, 20 Aug 2009 12:25:41 +0000 (UTC) (envelope-from fernan.aguero@gmail.com) Received: from mail-yx0-f181.google.com (mail-yx0-f181.google.com [209.85.210.181]) by mx1.freebsd.org (Postfix) with ESMTP id 6D6EE8FC43 for ; Thu, 20 Aug 2009 12:25:41 +0000 (UTC) Received: by yxe11 with SMTP id 11so6491691yxe.3 for ; Thu, 20 Aug 2009 05:25:40 -0700 (PDT) Received: by 10.90.149.6 with SMTP id w6mr5813098agd.90.1250770645487; Thu, 20 Aug 2009 05:17:25 -0700 (PDT) Received: from sigma.iib.unsam.edu.ar (mx.unsam.edu.ar [200.45.170.30]) by mx.google.com with ESMTPS id 29sm1556593agd.55.2009.08.20.05.17.24 (version=TLSv1/SSLv3 cipher=RC4-MD5); Thu, 20 Aug 2009 05:17:24 -0700 (PDT) Received: by sigma.iib.unsam.edu.ar (Postfix, from userid 1001) id 12D8D20010E; Thu, 20 Aug 2009 09:17:20 -0300 (ART) Message-Id: <20090820121721.12D8D20010E@sigma.iib.unsam.edu.ar> Date: Thu, 20 Aug 2009 09:17:20 -0300 (ART) From: Fernan Aguero Sender: Fernan Aguero To: FreeBSD-gnats-submit@FreeBSD.org X-Send-Pr-Version: 3.113 Cc: Subject: ports/137991: update biology/fasta3 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list Reply-To: Fernan Aguero List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 20 Aug 2009 12:30:06 -0000 >Number: 137991 >Category: ports >Synopsis: update biology/fasta3 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Thu Aug 20 12:30:04 UTC 2009 >Closed-Date: >Last-Modified: >Originator: Fernan Aguero >Release: FreeBSD 6.4-RELEASE-p3 i386 >Organization: IIB-UNSAM >Environment: FreeBSD gama.iib.unsam.edu.ar 6.4-RELEASE-p3 FreeBSD 6.4-RELEASE-p3 #0: Wed Mar 18 20:56:28 ART 2009 fernan@gama.iib.unsam.edu.ar:/usr/obj/freebsd/freebsd-6.4/src/sys/GAMA i386 >Description: This version fixes some issues with translated searches (termination codons were sometimes interpreted as 'J') and with alignment encodings with the -m 9c option with fasty35(_t). >How-To-Repeat: >Fix: --- fasta3.diff begins here --- diff -ruN --exclude=CVS /usr/ports/biology/fasta3/Makefile /freebsd/ports-dev/ports/biology/fasta3/Makefile --- /usr/ports/biology/fasta3/Makefile 2009-06-12 18:01:34.000000000 -0300 +++ /freebsd/ports-dev/ports/biology/fasta3/Makefile 2009-08-20 08:47:54.000000000 -0300 @@ -7,7 +7,7 @@ # PORTNAME= fasta3 -PORTVERSION= 35.4.7 +PORTVERSION= 35.4.9 CATEGORIES= biology MASTER_SITES= http://faculty.virginia.edu/wrpearson/fasta/fasta3/ DISTNAME= fasta-${PORTVERSION} diff -ruN --exclude=CVS /usr/ports/biology/fasta3/distinfo /freebsd/ports-dev/ports/biology/fasta3/distinfo --- /usr/ports/biology/fasta3/distinfo 2009-06-12 18:01:34.000000000 -0300 +++ /freebsd/ports-dev/ports/biology/fasta3/distinfo 2009-08-20 08:48:58.000000000 -0300 @@ -1,3 +1,3 @@ -MD5 (fasta-35.4.7.tar.gz) = b5264743c0cbdf7f4d29de82b725f277 -SHA256 (fasta-35.4.7.tar.gz) = 02b34aee73b610c37c8cc7fc5cc06c045402d424df5ffa6309afb147bd4e6120 -SIZE (fasta-35.4.7.tar.gz) = 630897 +MD5 (fasta-35.4.9.tar.gz) = 6bf19b771f2c64287b7713864b9f0a69 +SHA256 (fasta-35.4.9.tar.gz) = 4beaed42557572a1c8e5480e93641af175fa43c545f75c4bf06db62dced6bd39 +SIZE (fasta-35.4.9.tar.gz) = 630748 --- fasta3.diff ends here --- >Release-Note: >Audit-Trail: >Unformatted: