From owner-svn-ports-head@FreeBSD.ORG Sat Jul 20 10:04:33 2013 Return-Path: Delivered-To: svn-ports-head@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) by hub.freebsd.org (Postfix) with ESMTP id 9F453BC4; Sat, 20 Jul 2013 10:04:33 +0000 (UTC) (envelope-from wen@FreeBSD.org) Received: from svn.freebsd.org (svn.freebsd.org [IPv6:2001:1900:2254:2068::e6a:0]) by mx1.freebsd.org (Postfix) with ESMTP id 91DE2BC3; Sat, 20 Jul 2013 10:04:33 +0000 (UTC) Received: from svn.freebsd.org ([127.0.1.70]) by svn.freebsd.org (8.14.7/8.14.7) with ESMTP id r6KA4XIH008904; Sat, 20 Jul 2013 10:04:33 GMT (envelope-from wen@svn.freebsd.org) Received: (from wen@localhost) by svn.freebsd.org (8.14.7/8.14.5/Submit) id r6KA4XOh008899; Sat, 20 Jul 2013 10:04:33 GMT (envelope-from wen@svn.freebsd.org) Message-Id: <201307201004.r6KA4XOh008899@svn.freebsd.org> From: Wen Heping Date: Sat, 20 Jul 2013 10:04:33 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r323340 - head/biology/p5-Bio-Phylo X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.14 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 20 Jul 2013 10:04:33 -0000 Author: wen Date: Sat Jul 20 10:04:32 2013 New Revision: 323340 URL: http://svnweb.freebsd.org/changeset/ports/323340 Log: - Update to 0.56 Modified: head/biology/p5-Bio-Phylo/Makefile head/biology/p5-Bio-Phylo/distinfo head/biology/p5-Bio-Phylo/pkg-plist Modified: head/biology/p5-Bio-Phylo/Makefile ============================================================================== --- head/biology/p5-Bio-Phylo/Makefile Sat Jul 20 10:03:10 2013 (r323339) +++ head/biology/p5-Bio-Phylo/Makefile Sat Jul 20 10:04:32 2013 (r323340) @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= Bio-Phylo -PORTVERSION= 0.52 +PORTVERSION= 0.56 CATEGORIES= biology perl5 MASTER_SITES= CPAN PKGNAMEPREFIX= p5- @@ -52,10 +52,13 @@ MAN3= Bio::Phylo.3 \ Bio::Phylo::Matrices::Datatype::Continuous.3 \ Bio::Phylo::Matrices::Datatype::Custom.3 \ Bio::Phylo::Matrices::Datatype::Dna.3 \ + Bio::Phylo::Matrices::Datatype::Illumina.3 \ Bio::Phylo::Matrices::Datatype::Mixed.3 \ Bio::Phylo::Matrices::Datatype::Protein.3 \ Bio::Phylo::Matrices::Datatype::Restriction.3 \ Bio::Phylo::Matrices::Datatype::Rna.3 \ + Bio::Phylo::Matrices::Datatype::Sanger.3 \ + Bio::Phylo::Matrices::Datatype::Solexa.3 \ Bio::Phylo::Matrices::Datatype::Standard.3 \ Bio::Phylo::Matrices::Datum.3 \ Bio::Phylo::Matrices::DatumRole.3 \ @@ -77,6 +80,7 @@ MAN3= Bio::Phylo.3 \ Bio::Phylo::Parsers::Abstract.3 \ Bio::Phylo::Parsers::Adjacency.3 \ Bio::Phylo::Parsers::Fasta.3 \ + Bio::Phylo::Parsers::Fastq.3 \ Bio::Phylo::Parsers::Figtree.3 \ Bio::Phylo::Parsers::Json.3 \ Bio::Phylo::Parsers::Newick.3 \ @@ -133,10 +137,12 @@ MAN3= Bio::Phylo.3 \ Bio::Phylo::Unparsers::Rss1.3 \ Bio::Phylo::Unparsers::Taxlist.3 \ Bio::Phylo::Util::CONSTANT.3 \ + Bio::Phylo::Util::CONSTANT::Int.3 \ Bio::Phylo::Util::Dependency.3 \ Bio::Phylo::Util::Exceptions.3 \ Bio::Phylo::Util::IDPool.3 \ Bio::Phylo::Util::Logger.3 \ + Bio::Phylo::Util::MOP.3 \ Bio::Phylo::Util::OptionalInterface.3 \ Bio::Phylo::Util::StackTrace.3 \ Bio::PhyloRole.3 Modified: head/biology/p5-Bio-Phylo/distinfo ============================================================================== --- head/biology/p5-Bio-Phylo/distinfo Sat Jul 20 10:03:10 2013 (r323339) +++ head/biology/p5-Bio-Phylo/distinfo Sat Jul 20 10:04:32 2013 (r323340) @@ -1,2 +1,2 @@ -SHA256 (Bio-Phylo-0.52.tar.gz) = 5c023acc76fb643581bc3612a80e9081ad1a795270bbc02a15f4460637c526c3 -SIZE (Bio-Phylo-0.52.tar.gz) = 398024 +SHA256 (Bio-Phylo-0.56.tar.gz) = f10e7d4c24911c18f0f055b1f2f910507a34b1256e1bdaf139bd502368240bd9 +SIZE (Bio-Phylo-0.56.tar.gz) = 472198 Modified: head/biology/p5-Bio-Phylo/pkg-plist ============================================================================== --- head/biology/p5-Bio-Phylo/pkg-plist Sat Jul 20 10:03:10 2013 (r323339) +++ head/biology/p5-Bio-Phylo/pkg-plist Sat Jul 20 10:04:32 2013 (r323340) @@ -22,10 +22,13 @@ %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Continuous.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Custom.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Dna.pm +%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Illumina.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Mixed.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Protein.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Restriction.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Rna.pm +%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Sanger.pm +%%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Solexa.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Datatype/Standard.pm %%SITE_PERL%%/Bio/Phylo/Matrices/Datum.pm %%SITE_PERL%%/Bio/Phylo/Matrices/DatumRole.pm @@ -53,6 +56,7 @@ %%SITE_PERL%%/Bio/Phylo/Parsers/Abstract.pm %%SITE_PERL%%/Bio/Phylo/Parsers/Adjacency.pm %%SITE_PERL%%/Bio/Phylo/Parsers/Fasta.pm +%%SITE_PERL%%/Bio/Phylo/Parsers/Fastq.pm %%SITE_PERL%%/Bio/Phylo/Parsers/Figtree.pm %%SITE_PERL%%/Bio/Phylo/Parsers/Json.pm %%SITE_PERL%%/Bio/Phylo/Parsers/Newick.pm