From owner-freebsd-ports-bugs@FreeBSD.ORG Sat Dec 26 21:50:03 2009 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id EC99B1065679 for ; Sat, 26 Dec 2009 21:50:02 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id C8BE08FC21 for ; Sat, 26 Dec 2009 21:50:02 +0000 (UTC) Received: from freefall.freebsd.org (localhost [127.0.0.1]) by freefall.freebsd.org (8.14.3/8.14.3) with ESMTP id nBQLo2qD046831 for ; Sat, 26 Dec 2009 21:50:02 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.3/8.14.3/Submit) id nBQLo2Lg046830; Sat, 26 Dec 2009 21:50:02 GMT (envelope-from gnats) Resent-Date: Sat, 26 Dec 2009 21:50:02 GMT Resent-Message-Id: <200912262150.nBQLo2Lg046830@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, bf Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id A4FAC1065672 for ; Sat, 26 Dec 2009 21:40:08 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (www.freebsd.org [IPv6:2001:4f8:fff6::21]) by mx1.freebsd.org (Postfix) with ESMTP id 7AA3E8FC0C for ; Sat, 26 Dec 2009 21:40:08 +0000 (UTC) Received: from www.freebsd.org (localhost [127.0.0.1]) by www.freebsd.org (8.14.3/8.14.3) with ESMTP id nBQLe8NJ041541 for ; Sat, 26 Dec 2009 21:40:08 GMT (envelope-from nobody@www.freebsd.org) Received: (from nobody@localhost) by www.freebsd.org (8.14.3/8.14.3/Submit) id nBQLe8YW041540; Sat, 26 Dec 2009 21:40:08 GMT (envelope-from nobody) Message-Id: <200912262140.nBQLe8YW041540@www.freebsd.org> Date: Sat, 26 Dec 2009 21:40:08 GMT From: bf To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-3.1 Cc: Subject: ports/142051: [PATCH]math/jags: update to 1.0.4 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 26 Dec 2009 21:50:03 -0000 >Number: 142051 >Category: ports >Synopsis: [PATCH]math/jags: update to 1.0.4 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Sat Dec 26 21:50:02 UTC 2009 >Closed-Date: >Last-Modified: >Originator: bf >Release: 9-CURRENT amd64 >Organization: - >Environment: >Description: >How-To-Repeat: >Fix: Patch attached with submission follows: diff -ruN jags.orig/Makefile jags/Makefile --- jags.orig/Makefile 2009-12-26 13:28:55.000000000 -0500 +++ jags/Makefile 2009-12-26 14:54:47.000000000 -0500 @@ -7,8 +7,7 @@ # PORTNAME= jags -PORTVERSION= 1.0.3 -PORTREVISION= 4 +PORTVERSION= 1.0.4 CATEGORIES= math MASTER_SITES= http://www-fis.iarc.fr/~martyn/software/jags/ DISTNAME= ${PORTNAME:U}-${PORTVERSION} diff -ruN jags.orig/distinfo jags/distinfo --- jags.orig/distinfo 2009-12-26 13:28:55.000000000 -0500 +++ jags/distinfo 2009-12-26 14:57:14.000000000 -0500 @@ -1,6 +1,6 @@ -MD5 (jags/JAGS-1.0.3.tar.gz) = fa94031290e23d47e26affc571f76e38 -SHA256 (jags/JAGS-1.0.3.tar.gz) = 066e01617adb483d71d4bdefedba432babb7430379952910260f4f264fb0ef2e -SIZE (jags/JAGS-1.0.3.tar.gz) = 1204624 +MD5 (jags/JAGS-1.0.4.tar.gz) = a44dc20d548c5fd1a80504eb29f5397d +SHA256 (jags/JAGS-1.0.4.tar.gz) = 14665d034a36120ad373bc85702cca443da8e540533509486bdef432db0b5cca +SIZE (jags/JAGS-1.0.4.tar.gz) = 1074964 MD5 (jags/classic-bugs.tar.gz) = 34291e2f6d3921b1b1eb0ac1db3fbf90 SHA256 (jags/classic-bugs.tar.gz) = e3766060e0fcda709bf9326db79b14a6312f569417b7d59015bd37f0ebc1fe2f SIZE (jags/classic-bugs.tar.gz) = 81668 diff -ruN jags.orig/files/patch-src__modules__bugs__matrix__matrix.cc jags/files/patch-src__modules__bugs__matrix__matrix.cc --- jags.orig/files/patch-src__modules__bugs__matrix__matrix.cc 1969-12-31 19:00:00.000000000 -0500 +++ jags/files/patch-src__modules__bugs__matrix__matrix.cc 2009-12-26 15:49:47.000000000 -0500 @@ -0,0 +1,10 @@ +--- src/modules/bugs/matrix/matrix.cc.orig 2009-12-26 15:49:36.000000000 -0500 ++++ src/modules/bugs/matrix/matrix.cc 2009-12-26 15:48:07.000000000 -0500 +@@ -41,6 +41,7 @@ + } + + if (w[0] <= 0) { ++ delete [] w; + throw runtime_error("Non positive definite matrix in call to logdet"); + } + diff -ruN jags.orig/files/patch-src__modules__msm__matrix__matexp.cc jags/files/patch-src__modules__msm__matrix__matexp.cc --- jags.orig/files/patch-src__modules__msm__matrix__matexp.cc 1969-12-31 19:00:00.000000000 -0500 +++ jags/files/patch-src__modules__msm__matrix__matexp.cc 2009-12-26 15:38:01.000000000 -0500 @@ -0,0 +1,11 @@ +--- src/modules/msm/matrix/matexp.cc.orig 2009-12-26 15:36:17.000000000 -0500 ++++ src/modules/msm/matrix/matexp.cc 2009-12-26 15:36:54.000000000 -0500 +@@ -73,6 +73,8 @@ + int info = 0; + F77_DGESV (&n, &n, Acopy, &n, ipiv, X, &n, &info); + if (info != 0) { ++ delete [] Acopy; ++ delete [] ipiv; + throw runtime_error("Unable to solve linear equations"); + } + >Release-Note: >Audit-Trail: >Unformatted: