From owner-freebsd-ports-bugs@FreeBSD.ORG Tue Apr 28 01:38:04 2015 Return-Path: Delivered-To: freebsd-ports-bugs@FreeBSD.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id C614BE64 for ; Tue, 28 Apr 2015 01:38:04 +0000 (UTC) Received: from kenobi.freebsd.org (kenobi.freebsd.org [IPv6:2001:1900:2254:206a::16:76]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id B0C8C1B6F for ; Tue, 28 Apr 2015 01:38:04 +0000 (UTC) Received: from bugs.freebsd.org ([127.0.1.118]) by kenobi.freebsd.org (8.14.9/8.14.9) with ESMTP id t3S1c40N031276 for ; Tue, 28 Apr 2015 01:38:04 GMT (envelope-from bugzilla-noreply@freebsd.org) From: bugzilla-noreply@freebsd.org To: freebsd-ports-bugs@FreeBSD.org Subject: [Bug 199747] [NEW PORT] biology/bcftools Date: Tue, 28 Apr 2015 01:38:04 +0000 X-Bugzilla-Reason: AssignedTo X-Bugzilla-Type: new X-Bugzilla-Watch-Reason: None X-Bugzilla-Product: Ports & Packages X-Bugzilla-Component: Individual Port(s) X-Bugzilla-Version: Latest X-Bugzilla-Keywords: X-Bugzilla-Severity: Affects Only Me X-Bugzilla-Who: cartwright@asu.edu X-Bugzilla-Status: New X-Bugzilla-Priority: --- X-Bugzilla-Assigned-To: freebsd-ports-bugs@FreeBSD.org X-Bugzilla-Target-Milestone: --- X-Bugzilla-Flags: X-Bugzilla-Changed-Fields: bug_id short_desc product version rep_platform op_sys bug_status bug_severity priority component assigned_to reporter attachments.created Message-ID: Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: 7bit X-Bugzilla-URL: https://bugs.freebsd.org/bugzilla/ Auto-Submitted: auto-generated MIME-Version: 1.0 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.20 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 28 Apr 2015 01:38:04 -0000 https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=199747 Bug ID: 199747 Summary: [NEW PORT] biology/bcftools Product: Ports & Packages Version: Latest Hardware: Any OS: Any Status: New Severity: Affects Only Me Priority: --- Component: Individual Port(s) Assignee: freebsd-ports-bugs@FreeBSD.org Reporter: cartwright@asu.edu Created attachment 156059 --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=156059&action=edit patch to add biology/bcftools BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. It is the companion to the biology/samtools and biology/htslib ports that I already maintain. -- You are receiving this mail because: You are the assignee for the bug.