Date: Sun, 12 May 2013 17:22:47 GMT From: Troy <sindrome@gmail.com> To: freebsd-gnats-submit@FreeBSD.org Subject: amd64/178537: avogadro upgrade to 1.1.0 problem Message-ID: <201305121722.r4CHMlXY051977@oldred.FreeBSD.org> Resent-Message-ID: <201305121730.r4CHU067048450@freefall.freebsd.org>
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>Number: 178537
>Category: amd64
>Synopsis: avogadro upgrade to 1.1.0 problem
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: freebsd-amd64
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: sw-bug
>Submitter-Id: current-users
>Arrival-Date: Sun May 12 17:30:00 UTC 2013
>Closed-Date:
>Last-Modified:
>Originator: Troy
>Release: 9.1 Stable
>Organization:
>Environment:
FreeBSD xx.yy.net 9.1-STABLE FreeBSD 9.1-STABLE #1 r250333: Tue May 7 22:30:37 CDT 2013 foo@xx.yy.net:/usr/obj/usr/src/sys/OZ amd64
>Description:
I tried to upgrade to 1.1.0 and it's failing. I contacted the named port maintainer Troels Jacobson and he said he no longer maintains the port. I also posted it to the ports mailing list and got no responses.
avogadro-1.0.3_2 < needs updating (port has 1.1.0)
[ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectradialog.cpp.o
Linking CXX shared module ../../../../lib/crystallographyextension.so
/usr/bin/ld: spglib/libspglib.a(spglib.c.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC
spglib/libspglib.a: could not read symbols: Bad value
*** [lib/crystallographyextension.so] Error code 1
1 error
*** [libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all] Error code 2
[ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/uv.cpp.o
Linking CXX shared module ../../../../lib/spectraextension.so
[ 65%] Built target spectraextension
1 error
*** [all] Error code 2
1 error
*** [do-build] Error code 1
Stop in /usr/ports/science/avogadro.
*** [build] Error code 1
Stop in /usr/ports/science/avogadro.
** Command failed [exit code 1]: /usr/bin/script -qa /tmp/portupgrade20130510-68389-1uxumdh-0 env UPGRADE_TOOL=portupgrade UPGRADE_PORT=avogadro-1.0.3_2 UPGRADE_PORT_VER=1.0.3_2 make
** Fix the problem and try again.
** Listing the failed packages (-:ignored / *:skipped / !:failed)
! science/avogadro (avogadro-1.0.3_2) (unknown build error)
>How-To-Repeat:
Doing a portupgrade of avogardo-1.0.3_2 to 1.1.10 yields the output above.
>Fix:
>Release-Note:
>Audit-Trail:
>Unformatted:
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