From owner-freebsd-ports@FreeBSD.ORG Fri May 10 17:53:13 2013 Return-Path: Delivered-To: freebsd-ports@freebsd.org Received: from mx1.freebsd.org (mx1.FreeBSD.org [8.8.178.115]) by hub.freebsd.org (Postfix) with ESMTP id 14292BC6 for ; Fri, 10 May 2013 17:53:13 +0000 (UTC) (envelope-from sindrome@gmail.com) Received: from mail-ia0-x235.google.com (mail-ia0-x235.google.com [IPv6:2607:f8b0:4001:c02::235]) by mx1.freebsd.org (Postfix) with ESMTP id E15CEDE5 for ; Fri, 10 May 2013 17:53:12 +0000 (UTC) Received: by mail-ia0-f181.google.com with SMTP id f27so4912250iae.40 for ; Fri, 10 May 2013 10:53:12 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20120113; h=mime-version:x-received:date:message-id:subject:from:to :content-type; bh=G3gDVBwsWSi1nzSyau9wfyZ/872/eUBPWudMtm3xaNM=; b=u3XZdauLILyNZQMNcaRROhDX+9OjQwHnhH2XiyFMUBgR1mQ4shJKxJiw/YS+nAoQAO Xvh80lni6El8k8ZG2QTwMkqTnTC4p2/eMY4yZBFrIhXJU9qojUdH2ToYqfywe5m6MCVy 0oiiXI2Rlx2Hb63gGASznvhyqZAE4dYe2SGUxIvUr10BO3HAmDpMzPcHcp+46IphLnGF oM/1QkrDzvu+tR5ATQrVV6GmvtNU1mZKiWQ6vL+R2a/t7YBO8vUmwauxNgMwoKrEMErC qp/mxI1qW0BsvqMYsswAtnlKXlM/VBw2fvl0lVoyN8BPCjHggs9XqEviQ+D/qcgHYRDU tOMA== MIME-Version: 1.0 X-Received: by 10.50.49.41 with SMTP id r9mr2800890ign.13.1368208392664; Fri, 10 May 2013 10:53:12 -0700 (PDT) Received: by 10.64.235.172 with HTTP; Fri, 10 May 2013 10:53:12 -0700 (PDT) Date: Fri, 10 May 2013 12:53:12 -0500 Message-ID: Subject: Upgrading Avogardo to 1.1.0 problem with libspglib.a From: sindrome To: freebsd-ports@freebsd.org Content-Type: text/plain; charset=ISO-8859-1 X-Content-Filtered-By: Mailman/MimeDel 2.1.14 X-BeenThere: freebsd-ports@freebsd.org X-Mailman-Version: 2.1.14 Precedence: list List-Id: Porting software to FreeBSD List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 10 May 2013 17:53:13 -0000 I just noticed this was updated in the ports tree and upon trying to update ran into the following errors: [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectradialog.cpp.o Linking CXX shared module ../../../../lib/crystallographyextension.so /usr/bin/ld: spglib/libspglib.a(spglib.c.o): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC spglib/libspglib.a: could not read symbols: Bad value *** [lib/crystallographyextension.so] Error code 1 1 error *** [libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/all] Error code 2 [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/uv.cpp.o Linking CXX shared module ../../../../lib/spectraextension.so [ 65%] Built target spectraextension 1 error *** [all] Error code 2 1 error *** [do-build] Error code 1 Stop in /usr/ports/science/avogadro. *** [build] Error code 1 Stop in /usr/ports/science/avogadro. ** Command failed [exit code 1]: /usr/bin/script -qa /tmp/portupgrade20130510-68389-1uxumdh-0 env UPGRADE_TOOL=portupgrade UPGRADE_PORT=avogadro-1.0.3_2 UPGRADE_PORT_VER=1.0.3_2 make ** Fix the problem and try again. ** Listing the failed packages (-:ignored / *:skipped / !:failed) ! science/avogadro (avogadro-1.0.3_2) (unknown build error)