Date: Tue, 30 Oct 2018 01:13:51 GMT From: pkg-fallout@FreeBSD.org To: yuri@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 104amd64-quarterly][science/bagel] Failed for bagel-1.1.2.21 in build Message-ID: <201810300113.w9U1DpnM015328@beefy2.nyi.freebsd.org>
next in thread | raw e-mail | index | archive | help
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: branches/2018Q4/science/bagel/Makefile 480984 2018-09-30 21:11:48Z yuri $ Log URL: http://beefy2.nyi.freebsd.org/data/104amd64-quarterly/483320/logs/bagel-1.1.2.21.log Build URL: http://beefy2.nyi.freebsd.org/build.html?mastername=104amd64-quarterly&build=483320 Log: =>> Building science/bagel build started at Tue Oct 30 01:12:46 UTC 2018 port directory: /usr/ports/science/bagel package name: bagel-1.1.2.21 building for: FreeBSD 104amd64-quarterly-job-18 10.4-RELEASE-p13 FreeBSD 10.4-RELEASE-p13 amd64 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: branches/2018Q4/science/bagel/Makefile 480984 2018-09-30 21:11:48Z yuri $ Poudriere version: 3.2.8 Host OSVERSION: 1300000 Jail OSVERSION: 1004000 Job Id: 18 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1004000 UNAME_v=FreeBSD 10.4-RELEASE-p13 UNAME_r=10.4-RELEASE-p13 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8 MASTERMNT=/usr/local/poudriere/data/.m/104amd64-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/104amd64-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=104amd64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/104amd64-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for bagel-1.1.2.21: LIBXC=on: Build DFT with libxc MPI=on: MPI (Message Passing Interface) support SCALAPACK=on: Use ScaLapack library for parallelized linear algebra SMITH=on: Compile SMITH generated code ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --datarootdir=/usr/local/share/bagel --with-libxc --with-mpi=openmpi --enable-libxc --enable-smith --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran7" FC="gfortran7" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc7" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc7" MAKE=gmake PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/bagel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/bagel/work HOME=/wrkdirs/usr/ports/science/bagel/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/bagel/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran7" FC="gfortran7" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc7" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/bagel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/bagel/work HOME=/wrkdirs/usr/ports/science/bagel/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/bagel/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-alias ing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc7 -L/usr/local/lib/gcc7 -B/usr/local/bin -fstack-protector " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd10 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=10.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/bagel" EXAMPLESDIR="share/examples/bagel" DATADIR="share/bagel" WWWDIR="www/bagel" ETCDIR="etc/bagel" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/bagel DOCSDIR=/usr/local/share/doc/bagel EXAMPLESDIR=/usr/local/share/examples/bagel WWWDIR=/usr/local/www/bagel ETCDIR=/usr/local/etc/bagel --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 3.4.1 (tags/RELEASE_34/dot1-final 208032) 20140512 Target: x86_64-unknown-freebsd10.4 Thread model: posix _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 3.4.1 (tags/RELEASE_34/dot1-final 208032) 20140512 Target: x86_64-unknown-freebsd10.4 Thread model: posix "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=error: invalid value 'c++14' in '-std=c++14' CC_OUTPUT_921dbbb2_f2776b26=error: invalid value 'c++17' in '-std=c++17' CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=error: invalid value 'gnu++14' in '-std=gnu++14' CC_OUTPUT_921dbbb2_fb62803b=error: invalid value 'gnu++17' in '-std=gnu++17' _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 3.4.1 (tags/RELEASE_34/dot1-final 208032) 20140512 Target: x86_64-unknown-freebsd10.4 Thread model: posix _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=10.4-RELEASE-p13 OSREL=10.4 OSVERSION=1004000 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited sbsize (bytes, -b) unlimited pseudo-terminals (-p) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> bagel-1.1.2.21 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [104amd64-quarterly-job-18] Installing pkg-1.10.5_5... [104amd64-quarterly-job-18] Extracting pkg-1.10.5_5: .......... done ===> bagel-1.1.2.21 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of bagel-1.1.2.21 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by bagel-1.1.2.21 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by bagel-1.1.2.21 for building => SHA256 Checksum OK for nubakery-bagel-v1.1.2-21-g2a9472a50_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by bagel-1.1.2.21 for building ===> Extracting for bagel-1.1.2.21 => SHA256 Checksum OK for nubakery-bagel-v1.1.2-21-g2a9472a50_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for bagel-1.1.2.21 ===> Applying FreeBSD patches for bagel-1.1.2.21 =========================================================================== =======================<phase: build-depends >============================ ===> bagel-1.1.2.21 depends on package: autoconf>=2.69 - not found ===> Installing existing package /packages/All/autoconf-2.69_1.txz [104amd64-quarterly-job-18] Installing autoconf-2.69_1... [104amd64-quarterly-job-18] `-- Installing autoconf-wrapper-20131203... [104amd64-quarterly-job-18] `-- Extracting autoconf-wrapper-20131203: .......... done [104amd64-quarterly-job-18] `-- Installing indexinfo-0.3.1... [104amd64-quarterly-job-18] `-- Extracting indexinfo-0.3.1: .... done [104amd64-quarterly-job-18] `-- Installing m4-1.4.18,1... [104amd64-quarterly-job-18] `-- Extracting m4-1.4.18,1: .......... done <snip> checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if mpicc supports -fno-rtti -fno-exceptions... yes checking for mpicc option to produce PIC... -fPIC -DPIC checking if mpicc PIC flag -fPIC -DPIC works... yes checking if mpicc static flag -static works... yes checking if mpicc supports -c -o file.o... yes checking if mpicc supports -c -o file.o... (cached) yes checking whether the mpicc linker (/usr/local/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... freebsd10.4 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... mpicxx -E checking for ld used by mpicxx... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking whether the mpicxx linker (/usr/local/bin/ld) supports shared libraries... yes checking for mpicxx option to produce PIC... -fPIC -DPIC checking if mpicxx PIC flag -fPIC -DPIC works... yes checking if mpicxx static flag -static works... yes checking if mpicxx supports -c -o file.o... yes checking if mpicxx supports -c -o file.o... (cached) yes checking whether the mpicxx linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd10.4 ld.so checking how to hardcode library paths into programs... immediate checking for main in -lscalapack... yes checking for boostlib >= 1.53... yes checking whether the Boost::Regex library is available... yes checking for exit in -lboost_regex... yes checking whether the Boost::Unit_Test_Framework library is available... yes configure: WARNING: BOOST_CPPFLAGS -I/usr/local/include checking whether the Boost::Serialization library is available... yes checking for exit in -lboost_serialization... yes checking xc.h usability... yes checking xc.h presence... yes checking for xc.h... yes checking for main in -lxc... yes checking for zgemm3m_... no checking mpi.h usability... yes checking mpi.h presence... yes checking for mpi.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/util/Makefile config.status: creating src/util/input/Makefile config.status: creating src/util/io/Makefile config.status: creating src/util/parallel/Makefile config.status: creating src/util/math/Makefile config.status: creating src/asd/multisite/Makefile config.status: creating src/asd/dimer/Makefile config.status: creating src/asd/dmrg/Makefile config.status: creating src/asd/orbital/Makefile config.status: creating src/asd/Makefile config.status: creating src/wfn/Makefile config.status: creating src/grad/Makefile config.status: creating src/integral/Makefile config.status: creating src/scf/Makefile config.status: creating src/df/Makefile config.status: creating src/prop/Makefile config.status: creating src/smith/Makefile config.status: creating src/molecule/Makefile config.status: creating src/pt2/Makefile config.status: creating src/ci/Makefile config.status: creating src/ci/ciutil/Makefile config.status: creating src/ci/fci/Makefile config.status: creating src/ci/zfci/Makefile config.status: creating src/ci/ras/Makefile config.status: creating src/response/Makefile config.status: creating src/multi/Makefile config.status: creating src/multi/casscf/Makefile config.status: creating src/multi/zcasscf/Makefile config.status: creating src/mat1e/Makefile config.status: creating src/opt/Makefile config.status: creating src/basis/Makefile config.status: creating bagel_config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --enable-libxc =========================================================================== =======================<phase: build >============================ ===> Building for bagel-1.1.2.21 gmake[1]: Entering directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.1.2-21-g2a9472a50' gmake all-recursive gmake[2]: Entering directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.1.2-21-g2a9472a50' Making all in src gmake[3]: Entering directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.1.2-21-g2a9472a50/src' Making all in util gmake[4]: Entering directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.1.2-21-g2a9472a50/src/util' Making all in parallel gmake[5]: Entering directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.1.2-21-g2a9472a50/src/util/parallel' /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT process.lo -MD -MP -MF .deps/process.Tpo -c -o process.lo process.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT process.lo -MD -MP -MF .deps/process.Tpo -c process.cc -fPIC -DPIC -o .libs/process.o mv -f .deps/process.Tpo .deps/process.Plo /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT mpi_interface.lo -MD -MP -MF .deps/mpi_interface.Tpo -c -o mpi_interface.lo mpi_interface.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT mpi_interface.lo -MD -MP -MF .deps/mpi_interface.Tpo -c mpi_interface.cc -fPIC -DPIC -o .libs/mpi_interface.o mv -f .deps/mpi_interface.Tpo .deps/mpi_interface.Plo /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT rmawindow.lo -MD -MP -MF .deps/rmawindow.Tpo -c -o rmawindow.lo rmawindow.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT rmawindow.lo -MD -MP -MF .deps/rmawindow.Tpo -c rmawindow.cc -fPIC -DPIC -o .libs/rmawindow.o mv -f .deps/rmawindow.Tpo .deps/rmawindow.Plo /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT resources.lo -MD -MP -MF .deps/resources.Tpo -c -o resources.lo resources.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT resources.lo -MD -MP -MF .deps/resources.Tpo -c resources.cc -fPIC -DPIC -o .libs/resources.o mv -f .deps/resources.Tpo .deps/resources.Plo /bin/sh ../../../libtool --tag=CXX --mode=link mpicxx -I../../.. -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc7 -L/usr/local/lib/gcc7 -B/usr/local/bin -fstack-protector -o libbagel_parallel.la process.lo mpi_interface.lo rmawindow.lo resources.lo -lxc -lboost_regex -lboost_unit_test_framework -lboost_serialization -lscalapack -L/usr/local/lib libtool: link: /usr/local/bin/ar cru .libs/libbagel_parallel.a .libs/process.o .libs/mpi_interface.o .libs/rmawindow.o .libs/resources.o /usr/local/bin/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: /usr/local/bin/ranlib .libs/libbagel_parallel.a libtool: link: ( cd ".libs" && rm -f "libbagel_parallel.la" && ln -s "../libbagel_parallel.la" "libbagel_parallel.la" ) gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.1.2-21-g2a9472a50/src/util/parallel' Making all in io gmake[5]: Entering directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.1.2-21-g2a9472a50/src/util/io' /bin/sh ../../../libtool --tag=CXX --mode=compile mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT moldenin.lo -MD -MP -MF .deps/moldenin.Tpo -c -o moldenin.lo moldenin.cc libtool: compile: mpicxx -DHAVE_CONFIG_H -I. -I../../.. -isystem /usr/local/include -I/usr/local/include -I../../.. -O2 -pipe -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -std=c++11 -MT moldenin.lo -MD -MP -MF .deps/moldenin.Tpo -c moldenin.cc -fPIC -DPIC -o .libs/moldenin.o In file included from moldenin.cc:25: In file included from ../../../src/util/io/moldenin.h:28: In file included from ../../../src/util/io/moldenio.h:28: In file included from /usr/include/c++/v1/fstream:169: In file included from /usr/include/c++/v1/ostream:138: In file included from /usr/include/c++/v1/ios:216: In file included from /usr/include/c++/v1/__locale:15: In file included from /usr/include/c++/v1/string:439: In file included from /usr/include/c++/v1/algorithm:628: /usr/include/c++/v1/memory:4004:35: error: no viable overloaded '=' __e->__weak_this_ = *this; ~~~~~~~~~~~~~~~~~ ^ ~~~~~ /usr/include/c++/v1/memory:4284:9: note: in instantiation of function template specialization 'std::__1::shared_ptr<const bagel::DFDist>::__enable_weak_this<bagel::ParallelDF>' requested here __r.__enable_weak_this(__r.__ptr_); ^ /usr/include/c++/v1/memory:4644:29: note: in instantiation of function template specialization 'std::__1::shared_ptr<const bagel::DFDist>::make_shared<const unsigned long &, const unsigned long &, const std::__1::shared_ptr<bagel::DFBlock> &, const std::__1::shared_ptr<const bagel::ParallelDF> &, const std::__1::shared_ptr<bagel::Matrix> &>' requested here return shared_ptr<_Tp>::make_shared(_VSTD::forward<_Args>(__args)...); ^ ./../../src/df/df.h:80:28: note: in instantiation of function template specialization 'std::__1::make_shared<const bagel::DFDist, const unsigned long &, const unsigned long &, const std::__1::shared_ptr<bagel::DFBlock> &, const std::__1::shared_ptr<const bagel::ParallelDF> &, const std::__1::shared_ptr<bagel::Matrix> &>' requested here out.push_back(std::make_shared<const DFDist>(nindex1_, naux_, i, df_, data2_)); ^ /usr/include/c++/v1/memory:4956:15: note: candidate function not viable: no known conversion from 'std::__1::shared_ptr<const bagel::DFDist>' to 'const std::__1::weak_ptr<bagel::ParallelDF>' for 1st argument weak_ptr& operator=(weak_ptr const& __r) _NOEXCEPT; ^ /usr/include/c++/v1/memory:4967:15: note: candidate function not viable: no known conversion from 'std::__1::shared_ptr<const bagel::DFDist>' to 'std::__1::weak_ptr<bagel::ParallelDF>' for 1st argument weak_ptr& operator=(weak_ptr&& __r) _NOEXCEPT; ^ /usr/include/c++/v1/memory:4963:9: note: candidate template ignored: could not match 'weak_ptr' against 'shared_ptr' operator=(weak_ptr<_Yp> const& __r) _NOEXCEPT; ^ /usr/include/c++/v1/memory:4974:9: note: candidate template ignored: could not match 'weak_ptr' against 'shared_ptr' operator=(weak_ptr<_Yp>&& __r) _NOEXCEPT; ^ /usr/include/c++/v1/memory:4981:13: note: candidate template ignored: disabled by 'enable_if' [with _Yp = const bagel::DFDist] is_convertible<_Yp*, element_type*>::value, ^ /usr/include/c++/v1/memory:4004:35: error: no viable overloaded '=' __e->__weak_this_ = *this; ~~~~~~~~~~~~~~~~~ ^ ~~~~~ /usr/include/c++/v1/memory:4284:9: note: in instantiation of function template specialization 'std::__1::shared_ptr<const bagel::Coeff_<bagel::Matrix> >::__enable_weak_this<bagel::Matrix>' requested here __r.__enable_weak_this(__r.__ptr_); ^ /usr/include/c++/v1/memory:4644:29: note: in instantiation of function template specialization 'std::__1::shared_ptr<const bagel::Coeff_<bagel::Matrix> >::make_shared<const bagel::Matrix &>' requested here return shared_ptr<_Tp>::make_shared(_VSTD::forward<_Args>(__args)...); ^ ./../../src/wfn/reference.h:110:74: note: in instantiation of function template specialization 'std::__1::make_shared<const bagel::Coeff_<bagel::Matrix>, const bagel::Matrix &>' requested here void set_coeff(std::shared_ptr<const Matrix> matrix) { coeff_ = std::make_shared<const Coeff>(*matrix); } ^ /usr/include/c++/v1/memory:4956:15: note: candidate function not viable: no known conversion from 'std::__1::shared_ptr<const bagel::Coeff_<bagel::Matrix> >' to 'const std::__1::weak_ptr<bagel::Matrix>' for 1st argument weak_ptr& operator=(weak_ptr const& __r) _NOEXCEPT; ^ /usr/include/c++/v1/memory:4967:15: note: candidate function not viable: no known conversion from 'std::__1::shared_ptr<const bagel::Coeff_<bagel::Matrix> >' to 'std::__1::weak_ptr<bagel::Matrix>' for 1st argument weak_ptr& operator=(weak_ptr&& __r) _NOEXCEPT; ^ /usr/include/c++/v1/memory:4963:9: note: candidate template ignored: could not match 'weak_ptr' against 'shared_ptr' operator=(weak_ptr<_Yp> const& __r) _NOEXCEPT; ^ /usr/include/c++/v1/memory:4974:9: note: candidate template ignored: could not match 'weak_ptr' against 'shared_ptr' operator=(weak_ptr<_Yp>&& __r) _NOEXCEPT; ^ /usr/include/c++/v1/memory:4981:13: note: candidate template ignored: disabled by 'enable_if' [with _Yp = const bagel::Coeff_<bagel::Matrix>] is_convertible<_Yp*, element_type*>::value, ^ 2 errors generated. gmake[5]: *** [Makefile:404: moldenin.lo] Error 1 gmake[5]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.1.2-21-g2a9472a50/src/util/io' gmake[4]: *** [Makefile:461: all-recursive] Error 1 gmake[4]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.1.2-21-g2a9472a50/src/util' gmake[3]: *** [Makefile:640: all-recursive] Error 1 gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.1.2-21-g2a9472a50/src' gmake[2]: *** [Makefile:421: all-recursive] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.1.2-21-g2a9472a50' gmake[1]: *** [Makefile:353: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/bagel/work/bagel-1.1.2-21-g2a9472a50' *** Error code 1 Stop. make: stopped in /usr/ports/science/bagel
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201810300113.w9U1DpnM015328>