Date: Thu, 19 Sep 2019 12:39:28 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-powerpc64-default][math/R] Failed for R-3.6.1_1 in build Message-ID: <201909191239.x8JCdSfi064144@pylon.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jrm@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: head/math/R/Makefile 507372 2019-07-26 20:46:53Z gerald $ Log URL: http://pylon.nyi.freebsd.org/data/head-powerpc64-default/p512305_s352495/logs/R-3.6.1_1.log Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=head-powerpc64-default&build=p512305_s352495 Log: =>> Building math/R build started at Thu Sep 19 11:36:23 UTC 2019 port directory: /usr/ports/math/R package name: R-3.6.1_1 building for: FreeBSD head-powerpc64-default-job-01 13.0-CURRENT FreeBSD 13.0-CURRENT 1300047 powerpc maintained by: jrm@FreeBSD.org Makefile ident: $FreeBSD: head/math/R/Makefile 507372 2019-07-26 20:46:53Z gerald $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300039 Jail OSVERSION: 1300047 Job Id: 01 !!! Jail is newer than host. (Jail: 1300047, Host: 1300039) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300047 UNAME_v=FreeBSD 13.0-CURRENT 1300047 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-powerpc64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-powerpc64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for R-3.6.1_1: FLANG=off: Use experimental flang instead of default Fortran compiler ICU=on: Unicode support via ICU INFO=on: GNU info manuals LDOUBLE=on: Long double data type LETTER=off: US letter paper MEMPROF=off: Memory profiling via Rprofmem() and tracemem() NLS=on: Native Language Support OPENMP=on: Parallel processing support via OpenMP RPROF=on: R profiling via Rprof() X11=on: X11 graphics device ====> Require X11 GHOSTSCRIPT=on: Graphics device for bitmap files via Ghostscript JPEG=on: JPEG graphics device CAIROPANGO=on: Cairo graphics device and Pango multi-language text PNG=on: PNG graphics device TCLTK=on: Tcl/Tk GUI toolkit support TEXDOCS=off: Build/Install TeX-dependent documentation files TIFF=on: TIFF image format support ====> Options available for the single BLAS: you have to select exactly one of them ATLAS=off: ATLAS BLAS implementation OPENBLAS=off: OpenBLAS BLAS implementation NETLIB=off: Netlib BLAS implementation RBLAS=on: Use R-bundled BLAS implementation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- jrm@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --disable-java --enable-R-shlib --with-readline rdocdir=/usr/local/share/doc/R --with-cairo --with-ICU --with-jpeglib --enable-long-double --disable-memory-profiling --enable-openmp --with-libpng --without-blas --without-lapack --enable-BLAS-shlib --enable-R-profiling --with-tcltk --with-libtiff --with-x --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- r_cv_header_jpeglib_h=yes ac_cv_path_KPSEWHICH="" ac_cv_path_MAKEINDEX="" ac_cv_path_PDFLATEX="" ac_cv_path_PDFTEX="" ac_cv_path_TEX="" ac_cv_path_TEXI2DVI="" MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" XDG_DATA_HOME=/wrkdirs/usr/ports/math/R/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R/work HOME=/wrkdirs/usr/ports/math/R/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/l ocal/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CMAKE_PREFIX_PATH="/usr/local" LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" XDG_DATA_HOME=/wrkdirs/usr/ports/math/R/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R/work HOME=/wrkdirs/usr/ports/math/R/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="gcc9" CFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong - Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp9" CPPFLAGS="-DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 " LIBS="-L/usr/local/lib" CXX="g++9" CXXFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -DLIBICONV_PLUG -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- LIBVER=3.6 ATLAS="@comment " NO_ATLAS="" CAIROPANGO="" NO_CAIROPANGO="@comment " FLANG="@comment " NO_FLANG="" GHOSTSCRIPT="" NO_GHOSTSCRIPT="@comment " ICU="" NO_ICU="@comment " INFO="" NO_INFO="@comment " JPEG="" NO_JPEG="@comment " LDOUBLE="" NO_LDOUBLE="@comment " LETTER="@comment " NO_LETTER="" MEMPROF="@comment " NO_MEMPROF="" NETLIB="@comment " NO_NETLIB="" NLS="" NO_NLS="@comment " OPENBLAS="@comment " NO_OPENBLAS="" OPENMP="" NO_OPENMP="@comment " PNG="" NO_PNG="@comment " RBLAS="" NO_RBLAS="@comment " RPROF="" NO_RPROF="@comment " TCLTK="" NO_TCLTK="@comment " TEXDOCS="@comment " NO_TEXDOCS="" TIFF="" NO_TIFF="@comment " X11="" NO_X11="@comment " GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.30.0 PERL_VER=5.30 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.30 DOCSDIR="share/doc/R" EXAMPLESDIR="share/examples/R" DATADIR="share/R" WWWDIR="www/R" ETCDIR="etc/R" --End PLIST_SUB-- --SUB_LIST-- ATLAS="@comment " NO_ATLAS="" CAIROPANGO="" NO_CAIROPANGO="@comment " FLANG="@comment " NO_FLANG="" GHOSTSCRIPT="" NO_GHOSTSCRIPT="@comment " ICU="" NO_ICU="@comment " INFO="" NO_INFO="@comment " JPEG="" NO_JPEG="@comment " LDOUBLE="" NO_LDOUBLE="@comment " LETTER="@comment " NO_LETTER="" MEMPROF="@comment " NO_MEMPROF="" NETLIB="@comment " NO_NETLIB="" NLS="" NO_NLS="@comment " OPENBLAS="@comment " NO_OPENBLAS="" OPENMP="" NO_OPENMP="@comment " PNG="" NO_PNG="@comment " RBLAS="" NO_RBLAS="@comment " RPROF="" NO_RPROF="@comment " TCLTK="" NO_TCLTK="@comment " TEXDOCS="@comment " NO_TEXDOCS="" TIFF="" NO_TIFF="@comment " X11="" NO_X11="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/R DOCSDIR=/usr/local/share/doc/R EXAMPLESDIR=/usr/local/share/examples/R WWWDIR=/usr/local/www/R ETCDIR=/usr/local/etc/R --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11" CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11" CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x" CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11" CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14" CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17" CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11" CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14" CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17" _OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _OBJC_ALTCCVERSION_921dbbb2=none ARCH=powerpc64 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300047 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> R-3.6.1_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0.txz [head-powerpc64-default-job-01] Installing pkg-1.12.0... [head-powerpc64-default-job-01] Extracting pkg-1.12.0: .......... done ===> R-3.6.1_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-3.6.1_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-3.6.1_1 for building <snip> gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c pfm-read.c -o pfm-read.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c sfm-read.c -o sfm-read.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c spss.c -o spss.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c stataread.c -o stataread.o gcc9 -shared -L/wrkdirs/usr/ports/math/R/work/R-3.6.1/lib -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/wrkdirs/usr/ports/math/R/work/R-3.6.1/lib -lR gmake[4]: Leaving directory '/tmp/RtmpCfZ99T/R.INSTALL166201e0d9bd/foreign/src' installing to /wrkdirs/usr/ports/math/R/work/R-3.6.1/library/foreign/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (foreign) begin installing recommended package KernSmooth * installing *source* package ‘KernSmooth’ ... ** package ‘KernSmooth’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs gmake[4]: Entering directory '/tmp/RtmptnsVUh/R.INSTALL4fc40771092/KernSmooth/src' gfortran9 -fno-optimize-sibling-calls -fPIC -O -Wl,-rpath=/usr/local/lib/gcc9 -c blkest.f -o blkest.o gfortran9 -fno-optimize-sibling-calls -fPIC -O -Wl,-rpath=/usr/local/lib/gcc9 -c cp.f -o cp.o gfortran9 -fno-optimize-sibling-calls -fPIC -O -Wl,-rpath=/usr/local/lib/gcc9 -c dgedi.f -o dgedi.o gfortran9 -fno-optimize-sibling-calls -fPIC -O -Wl,-rpath=/usr/local/lib/gcc9 -c dgefa.f -o dgefa.o gfortran9 -fno-optimize-sibling-calls -fPIC -O -Wl,-rpath=/usr/local/lib/gcc9 -c dgesl.f -o dgesl.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c init.c -o init.o gfortran9 -fno-optimize-sibling-calls -fPIC -O -Wl,-rpath=/usr/local/lib/gcc9 -c linbin.f -o linbin.o gfortran9 -fno-optimize-sibling-calls -fPIC -O -Wl,-rpath=/usr/local/lib/gcc9 -c linbin2D.f -o linbin2D.o gfortran9 -fno-optimize-sibling-calls -fPIC -O -Wl,-rpath=/usr/local/lib/gcc9 -c locpoly.f -o locpoly.o gfortran9 -fno-optimize-sibling-calls -fPIC -O -Wl,-rpath=/usr/local/lib/gcc9 -c rlbin.f -o rlbin.o gfortran9 -fno-optimize-sibling-calls -fPIC -O -Wl,-rpath=/usr/local/lib/gcc9 -c sdiag.f -o sdiag.o gfortran9 -fno-optimize-sibling-calls -fPIC -O -Wl,-rpath=/usr/local/lib/gcc9 -c sstdiag.f -o sstdiag.o gcc9 -shared -L/wrkdirs/usr/ports/math/R/work/R-3.6.1/lib -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -L/wrkdirs/usr/ports/math/R/work/R-3.6.1/lib -lRblas -lgfortran -lm -lssp_nonshared -lgfortran -lm -lssp_nonshared -L/wrkdirs/usr/ports/math/R/work/R-3.6.1/lib -lR gmake[4]: Leaving directory '/tmp/RtmptnsVUh/R.INSTALL4fc40771092/KernSmooth/src' installing to /wrkdirs/usr/ports/math/R/work/R-3.6.1/library/KernSmooth/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (KernSmooth) begin installing recommended package rpart * installing *source* package ‘rpart’ ... ** package ‘rpart’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs gmake[4]: Entering directory '/tmp/Rtmpzbl85D/R.INSTALL1be03035a33d/rpart/src' gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c anova.c -o anova.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c anovapred.c -o anovapred.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c branch.c -o branch.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c bsplit.c -o bsplit.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c choose_surg.c -o choose_surg.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c fix_cp.c -o fix_cp.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c free_tree.c -o free_tree.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c gini.c -o gini.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c graycode.c -o graycode.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c init.c -o init.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c insert_split.c -o insert_split.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c make_cp_list.c -o make_cp_list.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c make_cp_table.c -o make_cp_table.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c mysort.c -o mysort.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c nodesplit.c -o nodesplit.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c partition.c -o partition.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c poisson.c -o poisson.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c pred_rpart.c -o pred_rpart.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c print_tree.c -o print_tree.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c rpart.c -o rpart.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c rpart_callback.c -o rpart_callback.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c rpartexp.c -o rpartexp.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c rpartexp2.c -o rpartexp2.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c rpcountup.c -o rpcountup.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c rpmatrix.c -o rpmatrix.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c rundown.c -o rundown.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c rundown2.c -o rundown2.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c surrogate.c -o surrogate.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c usersplit.c -o usersplit.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c xpred.c -o xpred.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c xval.c -o xval.o gcc9 -shared -L/wrkdirs/usr/ports/math/R/work/R-3.6.1/lib -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/wrkdirs/usr/ports/math/R/work/R-3.6.1/lib -lR gmake[4]: Leaving directory '/tmp/Rtmpzbl85D/R.INSTALL1be03035a33d/rpart/src' installing to /wrkdirs/usr/ports/math/R/work/R-3.6.1/library/rpart/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rpart) begin installing recommended package class * installing *source* package ‘class’ ... ** package ‘class’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs gmake[4]: Entering directory '/tmp/RtmpqSkR2M/R.INSTALL43ec5c4f1915/class/src' gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c class.c -o class.o gcc9 -shared -L/wrkdirs/usr/ports/math/R/work/R-3.6.1/lib -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -o class.so class.o -L/wrkdirs/usr/ports/math/R/work/R-3.6.1/lib -lR gmake[4]: Leaving directory '/tmp/RtmpqSkR2M/R.INSTALL43ec5c4f1915/class/src' installing to /wrkdirs/usr/ports/math/R/work/R-3.6.1/library/class/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (class) begin installing recommended package nnet * installing *source* package ‘nnet’ ... ** package ‘nnet’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs gmake[4]: Entering directory '/tmp/Rtmpfwcy8y/R.INSTALL502d27a00872/nnet/src' gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c nnet.c -o nnet.o gcc9 -shared -L/wrkdirs/usr/ports/math/R/work/R-3.6.1/lib -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -o nnet.so nnet.o -L/wrkdirs/usr/ports/math/R/work/R-3.6.1/lib -lR gmake[4]: Leaving directory '/tmp/Rtmpfwcy8y/R.INSTALL502d27a00872/nnet/src' installing to /wrkdirs/usr/ports/math/R/work/R-3.6.1/library/nnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nnet) begin installing recommended package spatial * installing *source* package ‘spatial’ ... ** package ‘spatial’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs gmake[4]: Entering directory '/tmp/RtmpwaGphO/R.INSTALL5cbc749f6e0c/spatial/src' gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c init.c -o init.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c krc.c -o krc.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c pps.c -o pps.o gcc9 -shared -L/wrkdirs/usr/ports/math/R/work/R-3.6.1/lib -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -o spatial.so init.o krc.o pps.o -L/wrkdirs/usr/ports/math/R/work/R-3.6.1/lib -lR gmake[4]: Leaving directory '/tmp/RtmpwaGphO/R.INSTALL5cbc749f6e0c/spatial/src' installing to /wrkdirs/usr/ports/math/R/work/R-3.6.1/library/spatial/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (spatial) begin installing recommended package mgcv * installing *source* package ‘mgcv’ ... ** package ‘mgcv’ successfully unpacked and MD5 sums checked ** using non-staged installation ** libs gmake[4]: Entering directory '/tmp/Rtmpz6bY26/R.INSTALL67157a251965/mgcv/src' gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c coxph.c -o coxph.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c discrete.c -o discrete.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c gdi.c -o gdi.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c init.c -o init.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c magic.c -o magic.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c mat.c -o mat.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c matrix.c -o matrix.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c mgcv.c -o mgcv.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c misc.c -o misc.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c mvn.c -o mvn.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c qp.c -o qp.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c soap.c -o soap.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c sparse-smooth.c -o sparse-smooth.o gcc9 -I"/wrkdirs/usr/ports/math/R/work/R-3.6.1/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fPIC -O2 -pipe -DLIBICONV_PLUG -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -isystem /usr/local/include -fno-strict-aliasing -c tprs.c -o tprs.o gcc9 -shared -L/wrkdirs/usr/ports/math/R/work/R-3.6.1/lib -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -o mgcv.so coxph.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -L/wrkdirs/usr/ports/math/R/work/R-3.6.1/lib -lRlapack -L/wrkdirs/usr/ports/math/R/work/R-3.6.1/lib -lRblas -lgfortran -lm -lssp_nonshared -fopenmp -L/wrkdirs/usr/ports/math/R/work/R-3.6.1/lib -lR gmake[4]: Leaving directory '/tmp/Rtmpz6bY26/R.INSTALL67157a251965/mgcv/src' installing to /wrkdirs/usr/ports/math/R/work/R-3.6.1/library/mgcv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded Error: package or namespace load failed for ‘mgcv’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/wrkdirs/usr/ports/math/R/work/R-3.6.1/library/mgcv/libs/mgcv.so': /wrkdirs/usr/ports/math/R/work/R-3.6.1/library/mgcv/libs/mgcv.so: Undefined symbol "GOMP_loop_nonmonotonic_dynamic_start" Error: loading failed Execution halted ERROR: loading failed * removing ‘/wrkdirs/usr/ports/math/R/work/R-3.6.1/library/mgcv’ gmake[3]: *** [Makefile:53: mgcv.ts] Error 1 gmake[3]: Leaving directory '/wrkdirs/usr/ports/math/R/work/R-3.6.1/src/library/Recommended' gmake[2]: *** [Makefile:39: recommended-packages] Error 2 gmake[2]: Leaving directory '/wrkdirs/usr/ports/math/R/work/R-3.6.1/src/library/Recommended' gmake[1]: *** [Makefile:77: stamp-recommended] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/math/R/work/R-3.6.1' *** Error code 1 Stop. make: stopped in /usr/ports/math/R
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