Date: Fri, 6 Sep 2019 09:58:40 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-armv7-default][science/py-pymol] Failed for py27-pymol-2.3.0_1 in stage Message-ID: <201909060958.x869wemq034432@beefy16.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: head/science/py-pymol/Makefile 507372 2019-07-26 20:46:53Z gerald $ Log URL: http://beefy16.nyi.freebsd.org/data/head-armv7-default/p510912_s351728/logs/py27-pymol-2.3.0_1.log Build URL: http://beefy16.nyi.freebsd.org/build.html?mastername=head-armv7-default&build=p510912_s351728 Log: =>> Building science/py-pymol build started at Fri Sep 6 09:55:03 UTC 2019 port directory: /usr/ports/science/py-pymol package name: py27-pymol-2.3.0_1 building for: FreeBSD head-armv7-default-job-04 13.0-CURRENT FreeBSD 13.0-CURRENT 1300044 arm maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/py-pymol/Makefile 507372 2019-07-26 20:46:53Z gerald $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300031 Jail OSVERSION: 1300044 Job Id: 04 !!! Jail is newer than host. (Jail: 1300044, Host: 1300031) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv7 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1300044 UNAME_v=FreeBSD 13.0-CURRENT 1300044 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-armv7-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-armv7-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-armv7-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py27 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py27 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for py27-pymol-2.3.0_1: ====> GUI (Graphical User Interface) support: you have to select exactly one of them QT5=on: Qt 5 toolkit support TK=off: Tk GUI toolkit support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py27 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py27 HOME=/wrkdirs/usr/ports/science/py-pymol/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-pymol/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py27 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-pymol/work-py27 HOME=/wrkdirs/usr/ports/science/py-pymol/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-pymol/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="/nxb-bin/usr/bin/cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0 644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " PYQT_APIDIR=share/PyQt5/2.7/qsci PYQT_DOCDIR=share/doc/PyQt5/2.7 PYQT_EXAMPLEDIR=share/examples/PyQt5/2.7 PYQT_SIPDIR=share/PyQt5/2.7/sip PYQT_DESIGNERDIR=/designer/PyQt5/2.7 PYQT_QMLDIR=/PyQt5/2.7 PYQT_SIPVERSION=4.19.17 PYQT_QSCIVERSION=2.11.1 PYQT_PYQTVERSION=5.12.2 OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py27-pymol" EXAMPLESDIR="share/examples/py27-pymol" DATADIR="share/py27-pymol" WWWDIR="www/py27-pymol" ETCDIR="etc/py27-pymol" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py27-pymol DOCSDIR=/usr/local/share/doc/py27-pymol EXAMPLESDIR=/usr/local/share/examples/py27-pymol WWWDIR=/usr/local/www/py27-pymol ETCDIR=/usr/local/etc/py27-pymol --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv7 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300044 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License PyMOL accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> py27-pymol-2.3.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz [head-armv7-default-job-04] Installing pkg-1.11.1... [head-armv7-default-job-04] Extracting pkg-1.11.1: .......... done ===> py27-pymol-2.3.0_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-pymol-2.3.0_1 <snip> byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pmg_qt/forms/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pmg_tk/PMGApp.py to PMGApp.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pmg_tk/TextEditor.py to TextEditor.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pmg_tk/startup/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pmg_tk/startup/apbs_tools.py to apbs_tools.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pmg_tk/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pmg_tk/Setting.py to Setting.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pmg_tk/ColorEditor.py to ColorEditor.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pmg_tk/PyMOLMapLoad.py to PyMOLMapLoad.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/demo/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/normal/builder.py to builder.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/normal/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pmg_tk/skins/normal/ModalWindow.py to ModalWindow.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pmg_tk/SetEditor.py to SetEditor.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pmg_tk/Demo.py to Demo.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pmg_tk/volume.py to volume.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/api.py to api.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizarding.py to wizarding.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/exporting.py to exporting.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/_gui.py to _gui.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/rpc.py to rpc.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/selector.py to selector.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/locking.py to locking.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/preset.py to preset.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/headering.py to headering.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/querying.py to querying.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/cmd.py to cmd.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/colorramping.py to colorramping.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/plugins/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/plugins/managergui.py to managergui.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/plugins/repository.py to repository.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/plugins/legacysupport.py to legacysupport.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/plugins/managergui_qt.py to managergui_qt.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/plugins/installation.py to installation.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/shortcut.py to shortcut.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/xray.py to xray.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/editing.py to editing.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/selecting.py to selecting.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/gl/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/glut/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/opengl/glu/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/keywords.py to keywords.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/creating.py to creating.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/parsing.py to parsing.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/__main__.py to __main__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/importing.py to importing.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/povray.py to povray.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/xwin.py to xwin.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/constants_palette.py to constants_palette.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/computing.py to computing.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/movie.py to movie.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/menu.py to menu.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/callback.py to callback.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/sculpting.py to sculpting.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/cleanup.py to cleanup.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/fedora.py to fedora.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/security.py to security.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/message.py to message.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/appearance.py to appearance.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/pair_fit.py to pair_fit.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/charge.py to charge.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/pseudoatom.py to pseudoatom.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/label.py to label.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/renaming.py to renaming.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/command.py to command.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/filter.py to filter.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/density.py to density.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/distance.py to distance.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/nucmutagenesis.py to nucmutagenesis.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/stereodemo.py to stereodemo.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/benchmark.py to benchmark.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/annotation.py to annotation.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/mutagenesis.py to mutagenesis.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/demo.py to demo.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/measurement.py to measurement.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/dragging.py to dragging.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/box.py to box.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/wizard/toggle.py to toggle.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/externing.py to externing.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/editor.py to editor.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/internal.py to internal.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/feedingback.py to feedingback.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/util.py to util.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/gui.py to gui.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/helping.py to helping.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/keyboard.py to keyboard.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/commanding.py to commanding.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/m4x.py to m4x.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/completing.py to completing.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/monitoring.py to monitoring.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/constants.py to constants.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/colorprinting.py to colorprinting.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/lazyio.py to lazyio.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/experimenting.py to experimenting.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/fitting.py to fitting.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/parser.py to parser.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/vfont.py to vfont.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/morphing.py to morphing.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/pymolhttpd.py to pymolhttpd.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/contrib/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/setting.py to setting.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/viewing.py to viewing.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/controlling.py to controlling.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/moving.py to moving.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/seqalign.py to seqalign.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/embed/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/embed/epymol/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/embed/wxpymol/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/cgo.py to cgo.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/checking.py to checking.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/Qt/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/Qt/utils.py to utils.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/invocation.py to invocation.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/diagnosing.py to diagnosing.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/stereochemistry/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/cex.py to cex.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/cpv.py to cpv.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/mass.py to mass.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/charge.py to charge.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/models.py to models.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/cif.py to cif.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/solvate.py to solvate.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/bmin/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/bmin/commands.py to commands.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/bmin/util.py to util.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/bmin/state.py to state.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/bmin/realtime.py to realtime.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/water_residues.py to water_residues.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/pkl.py to pkl.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/tinker/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/tinker/amber.py to amber.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/tinker/state.py to state.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/tinker/keyword.py to keyword.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/tinker/realtime.py to realtime.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/fast/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/lst.py to lst.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/protein_mmff.py to protein_mmff.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/water_amber.py to water_amber.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/protein.py to protein.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/gms.py to gms.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/io.py to io.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/mol.py to mol.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/pdb.py to pdb.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/dictdb.py to dictdb.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/mae.py to mae.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/protein_amber.py to protein_amber.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/mol2.py to mol2.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/neighbor.py to neighbor.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/sdf.py to sdf.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/map.py to map.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/bond_mmff.py to bond_mmff.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/champ/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/champ/amber99.py to amber99.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/champ/formal_charges.py to formal_charges.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/champ/assign.py to assign.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/hetatm.py to hetatm.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/cc1.py to cc1.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/gamess1.py to gamess1.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/brick.py to brick.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/place.py to place.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/protein_residues.py to protein_residues.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/protein_amber99.py to protein_amber99.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/bonds.py to bonds.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/mmd.py to mmd.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/xyz.py to xyz.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/mmtf/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/mmtf/io.py to io.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/fragments/__init__.py to __init__.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/arc.py to arc.pyc byte-compiling /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/chempy/bond_amber.py to bond_amber.pyc writing byte-compilation script '/tmp/tmp7il1fD.py' /usr/local/bin/python2.7 -O /tmp/tmp7il1fD.py removing /tmp/tmp7il1fD.py running install_egg_info running egg_info creating pymol.egg-info writing pymol.egg-info/PKG-INFO writing top-level names to pymol.egg-info/top_level.txt writing dependency_links to pymol.egg-info/dependency_links.txt writing manifest file 'pymol.egg-info/SOURCES.txt' reading manifest file 'pymol.egg-info/SOURCES.txt' writing manifest file 'pymol.egg-info/SOURCES.txt' Copying pymol.egg-info to /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol-2.3.0-py2.7.egg-info writing list of installed files to '/wrkdirs/usr/ports/science/py-pymol/work-py27/.PLIST.pymodtmp' creating /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/pymol_path copying LICENSE -> /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/pymol_path Fatal error 'thread 0xf3b5b100 exits with resources held!' at line 321 in file /usr/local/poudriere/jails/head-armv7/usr/src/lib/libthr/thread/thr_exit.c (errno = 35) copying data -> /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/pymol_path/data copying test -> /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/pymol_path/test copying scripts -> /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/pymol_path/scripts copying examples -> /wrkdirs/usr/ports/science/py-pymol/work-py27/stage/usr/local/lib/python2.7/site-packages/pymol/pymol_path/examples *** Signal 11 Stop. make: stopped in /usr/ports/science/py-pymol
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