Date: Fri, 31 May 2019 01:26:21 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 120powerpc64-quarterly][biology/ugene] Failed for ugene-1.31.0_1 in build Message-ID: <201905310126.x4V1QLko034297@pylon.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: h2+fbsdports@fsfe.org Last committer: tijl@FreeBSD.org Ident: $FreeBSD: branches/2019Q2/biology/ugene/Makefile 490472 2019-01-16 11:13:44Z tijl $ Log URL: http://pylon.nyi.freebsd.org/data/120powerpc64-quarterly/503012/logs/ugene-1.31.0_1.log Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=120powerpc64-quarterly&build=503012 Log: =>> Building biology/ugene build started at Fri May 31 01:18:17 UTC 2019 port directory: /usr/ports/biology/ugene package name: ugene-1.31.0_1 building for: FreeBSD 120powerpc64-quarterly-job-14 12.0-RELEASE-p5 FreeBSD 12.0-RELEASE-p5 1200086 powerpc maintained by: h2+fbsdports@fsfe.org Makefile ident: $FreeBSD: branches/2019Q2/biology/ugene/Makefile 490472 2019-01-16 11:13:44Z tijl $ Poudriere version: 3.2.8-4-g701d8fe1 Host OSVERSION: 1300012 Jail OSVERSION: 1200086 Job Id: 14 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1200086 UNAME_v=FreeBSD 12.0-RELEASE-p5 1200086 UNAME_r=12.0-RELEASE-p5 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-4-g701d8fe1 MASTERMNT=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=120powerpc64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for ugene-1.31.0_1: DOCS=on: Install official UGENE documentation (PDF) OPENCL=off: Heterogeneous computing via OpenCL ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- h2+fbsdports@fsfe.org --End MAINTAINER-- --CONFIGURE_ARGS-- --with-qt-includes=/usr/local/include/qt5 --with-qt-libraries=/usr/local/lib/qt5 --with-extra-includes=/usr/local/include --with-extra-libs=/usr/local/lib --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" QTDIR="/usr/local/lib/qt5" QMAKE="/usr/local/lib/qt5/bin/qmake" MOC="/usr/local/lib/qt5/bin/moc" RCC="/usr/local/lib/qt5/bin/rcc" UIC="/usr/local/lib/qt5/bin/uic" QMAKESPEC="/usr/local/lib/qt5/mkspecs/freebsd-$(ccver="$(c++ --version)"; case "$ccver" in *clang*) echo clang ;; *) echo g++ ;; esac)" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ugene/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- QT_SELECT=qt5 QMAKEMODULES="/wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/mkspecs/modules:/usr/local/lib/qt5/mkspecs/modules" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ugene/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" QT_BINDIR="lib/qt5/bin" QT_INCDIR="include/qt5" QT_LIBDIR="lib/qt5" QT_ARCHDIR="lib/qt5" QT_PLUGINDIR="lib/qt5/plugins" QT_LIBEXECDIR="libexec/qt5" QT_IMPORTDIR="lib/qt5/imports" QT_QMLDIR="lib/qt5/qml" QT_DATADIR="share/qt5" QT_DOCDIR="share/doc/qt5" QT_L10NDIR="share/qt5/translations" QT_EXAMPLEDIR="share/examples/qt5" QT_TESTDIR="share/qt5/tests" QT_MKSPECDIR="lib/qt5/mkspecs" QT_QTCHOOSERDIR="etc/xdg/qtchooser" DEBUG="@comment " OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/ugene/manuals" EXAMPLESDIR="share/examples/ugene" DATADIR="share/ugene" WWWDIR="www/ugene" ETCDIR="etc/ugene" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ugene DOCSDIR=/usr/local/share/ugene/manuals EXAMPLESDIR=/usr/local/share/examples/ugene WWWDIR=/usr/local/www/ugene ETCDIR=/usr/local/etc/ugene --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11" CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11" CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x" CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11" CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14" CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17" CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11" CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14" CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17" _OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _OBJC_ALTCCVERSION_921dbbb2=none ARCH=powerpc64 OPSYS=FreeBSD _OSRELEASE=12.0-RELEASE-p5 OSREL=12.0 OSVERSION=1200086 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2+ accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> ugene-1.31.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [120powerpc64-quarterly-job-14] Installing pkg-1.10.5_5... [120powerpc64-quarterly-job-14] Extracting pkg-1.10.5_5: .......... done ===> ugene-1.31.0_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ugene-1.31.0_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2+ accepted by the user => ugene-1.31.0.tar.gz doesn't seem to exist in /portdistfiles/ugene. => Attempting to fetch http://ugene.unipro.ru/downloads/ugene-1.31.0.tar.gz fetch: http://ugene.unipro.ru/downloads/ugene-1.31.0.tar.gz: Not Found => Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/ugene/ugene-1.31.0.tar.gz ugene-1.31.0.tar.gz 19 MB 43 MBps 00s => QueryDesigner_UserManual.pdf doesn't seem to exist in /portdistfiles/ugene. => Attempting to fetch http://ugene.unipro.ru/downloads/QueryDesigner_UserManual.pdf fetch: http://ugene.unipro.ru/downloads/QueryDesigner_UserManual.pdf: size mismatch: expected 855662, actual 855599 => Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/ugene/QueryDesigner_UserManual.pdf QueryDesigner_UserManual.pdf 835 kB 32 MBps 00s => UniproUGENE_UserManual.pdf doesn't seem to exist in /portdistfiles/ugene. => Attempting to fetch http://ugene.unipro.ru/downloads/UniproUGENE_UserManual.pdf fetch: http://ugene.unipro.ru/downloads/UniproUGENE_UserManual.pdf: size mismatch: expected 13443754, actual 14320495 => Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/ugene/UniproUGENE_UserManual.pdf UniproUGENE_UserManual.pdf 12 MB 43 MBps 01s => WorkflowDesigner_UserManual.pdf doesn't seem to exist in /portdistfiles/ugene. => Attempting to fetch http://ugene.unipro.ru/downloads/WorkflowDesigner_UserManual.pdf fetch: http://ugene.unipro.ru/downloads/WorkflowDesigner_UserManual.pdf: size mismatch: expected 29474484, actual 35410068 => Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/ugene/WorkflowDesigner_UserManual.pdf WorkflowDesigner_UserManual.pdf 28 MB 47 MBps 01s ===> Fetching all distfiles required by ugene-1.31.0_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by ugene-1.31.0_1 for building => SHA256 Checksum OK for ugene/ugene-1.31.0.tar.gz. => SHA256 Checksum OK for ugene/QueryDesigner_UserManual.pdf. => SHA256 Checksum OK for ugene/UniproUGENE_UserManual.pdf. => SHA256 Checksum OK for ugene/WorkflowDesigner_UserManual.pdf. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== <snip> /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/sitecon/sitecon.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/umuscle/umuscle.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/hmm2/hmm2.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/gor4/gor4.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/psipred/psipred.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/primer3/primer3.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/phylip/phylip.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/kalign/kalign.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/ptools/ptools.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins_3rdparty/variants/variants.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/ngs_reads_classification/ngs_reads_classification.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/CoreTests/CoreTests.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/GUITestBase/GUITestBase.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/annotator/annotator.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/api_tests/api_tests.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/biostruct3d_view/biostruct3d_view.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/browser_support/browser_support.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/chroma_view/chroma_view.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/circular_view/circular_view.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/clark_support/clark_support.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/dbi_bam/dbi_bam.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/diamond_support/diamond_support.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/dna_export/dna_export.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/dna_flexibility/dna_flexibility.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/dna_graphpack/dna_graphpack.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/dna_stat/dna_stat.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/dotplot/dotplot.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/enzymes/enzymes.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/external_tool_support/external_tool_support.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/genome_aligner/genome_aligner.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/kraken_support/kraken_support.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/linkdata_support/linkdata_support.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/orf_marker/orf_marker.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/pcr/pcr.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/perf_monitor/perf_monitor.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/query_designer/query_designer.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/remote_blast/remote_blast.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/repeat_finder/repeat_finder.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/smith_waterman/smith_waterman.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/test_runner/test_runner.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/weight_matrix/weight_matrix.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/wevote_support/wevote_support.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/workflow_designer/workflow_designer.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. Reading /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/plugins/opencl_support/opencl_support.pro /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. /usr/local/lib/qt5/mkspecs/features/toolchain.prf:76: Variable QMAKE_CXX.COMPILER_MACROS is not defined. =========================================================================== =======================<phase: build >============================ ===> Building for ugene-1.31.0_1 cd src/libs_3rdparty/qscore/ && ( test -e Makefile || /usr/local/lib/qt5/bin/qmake -o Makefile /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/libs_3rdparty/qscore/qscore.pro INSTALL_PREFIX=/usr/local UGENE_INSTALL_DATA=/usr/local/share/ugene INSTALL_MANDIR=/usr/local/man LRELEASE=/usr/local/lib/qt5/bin/lrelease LUPDATE=/usr/local/lib/qt5/bin/lupdate -spec /usr/local/lib/qt5/mkspecs/freebsd-g++ QMAKE_CC=cc QMAKE_CXX=c++ QMAKE_LINK_C=cc QMAKE_LINK_C_SHLIB=cc QMAKE_LINK=c++ QMAKE_LINK_SHLIB=c++ 'QMAKE_CFLAGS=-O2 -pipe -fno-strict-aliasing ' 'QMAKE_CXXFLAGS=-O2 -pipe -fno-strict-aliasing ' 'QMAKE_LFLAGS= ' QMAKE_LIBS= QMAKE_CFLAGS_DEBUG= QMAKE_CFLAGS_RELEASE= QMAKE_CXXFLAGS_DEBUG= QMAKE_CXXFLAGS_RELEASE= PREFIX=/usr/local CONFIG+=release 'CONFIG-=debug separate_debug_info' ) && /usr/bin/make -f Makefile release /usr/bin/make -f Makefile.Release c++ -c -O2 -pipe -fno-strict-aliasing -fPIC -std=gnu++11 -w -pthread -DU2_DISTRIBUTION_INFO=sources -DUGENE_VERSION=1.31.0 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=31 -DUGENE_VER_PATCH=0 -DUGENE_X86 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DNDEBUG -DQT_NO_DEBUG -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_XML_LIB -DQT_SCRIPT_LIB -DQT_CORE_LIB -I. -Isrc -I_tmp -I../../core/src -I../../include -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtNetwork -isystem /usr/local/include/qt5/QtXml -isystem /usr/local/include/qt5/QtScript -isystem /usr/local/include/qt5/QtCore -I_tmp/moc/release -isystem /usr/local/include/libdrm -isystem /usr/local/include -I/usr/local/lib/qt5/mkspecs/freebsd-g++ -o _tmp/obj/release/QScoreAdapter.o src/QScoreAdapter.cpp cc1plus: error: unrecognized command line option "-std=gnu++11" *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/libs_3rdparty/qscore *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0/src/libs_3rdparty/qscore *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.31.0 *** Error code 1 Stop. make: stopped in /usr/ports/biology/ugene
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