From owner-freebsd-pkg-fallout@freebsd.org Thu Sep 6 01:38:03 2018 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 63FE8FE12BB for ; Thu, 6 Sep 2018 01:38:03 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id 02EE97F5BF for ; Thu, 6 Sep 2018 01:38:03 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id BB73CFE12BA; Thu, 6 Sep 2018 01:38:02 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 88BE6FE12B9 for ; Thu, 6 Sep 2018 01:38:02 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 3F0D57F5BE for ; Thu, 6 Sep 2018 01:38:02 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy8.nyi.freebsd.org (beefy8.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:eb]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 39F732DCD5 for ; Thu, 6 Sep 2018 01:38:02 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy8.nyi.freebsd.org (localhost [127.0.0.1]) by beefy8.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id w861c2PP043457 for ; Thu, 6 Sep 2018 01:38:02 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy8.nyi.freebsd.org (8.15.2/8.15.2/Submit) id w861c2bL043451; Thu, 6 Sep 2018 01:38:02 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Thu, 6 Sep 2018 01:38:02 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201809060138.w861c2bL043451@beefy8.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - head-armv6-default][biology/pycogent] Failed for pycogent-1.9_1 in configure X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.27 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 06 Sep 2018 01:38:03 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: python@FreeBSD.org Last committer: mat@FreeBSD.org Ident: $FreeBSD: head/biology/pycogent/Makefile 472884 2018-06-20 17:05:41Z mat $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p478648_s338416/logs/pycogent-1.9_1.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p478648_s338416 Log: =>> Building biology/pycogent build started at Thu Sep 6 01:36:42 UTC 2018 port directory: /usr/ports/biology/pycogent package name: pycogent-1.9_1 building for: FreeBSD head-armv6-default-job-15 12.0-ALPHA4 FreeBSD 12.0-ALPHA4 1200083 arm maintained by: python@FreeBSD.org Makefile ident: $FreeBSD: head/biology/pycogent/Makefile 472884 2018-06-20 17:05:41Z mat $ Poudriere version: 3.2.7-6-g819c79a1 Host OSVERSION: 1200069 Jail OSVERSION: 1200083 Job Id: 15 !!! Jail is newer than host. (Jail: 1200083, Host: 1200069) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1200083 UNAME_v=FreeBSD 12.0-ALPHA4 1200083 UNAME_r=12.0-ALPHA4 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.7-6-g819c79a1 MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py27 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py27 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- python@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/pycogent/work-py27 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/pycogent/work-py27 HOME=/wrkdirs/usr/ports/biology/pycogent/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/pycogent/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/pycogent/work-py27 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/pycogent/work-py27 HOME=/wrkdirs/usr/ports/biology/pycogent/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/pycogent/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="/nxb-bin/usr/bin/cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd12 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/pycogent" EXAMPLESDIR="share/examples/pycogent" DATADIR="share/pycogent" WWWDIR="www/pycogent" ETCDIR="etc/pycogent" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pycogent DOCSDIR=/usr/local/share/doc/pycogent EXAMPLESDIR=/usr/local/share/examples/pycogent WWWDIR=/usr/local/www/pycogent ETCDIR=/usr/local/etc/pycogent --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: armv6-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: armv6-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: armv6-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv6 OPSYS=FreeBSD _OSRELEASE=12.0-ALPHA4 OSREL=12.0 OSVERSION=1200083 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv2 accepted by the user =========================================================================== =================================================== ===> pycogent-1.9_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_2.txz [head-armv6-default-job-15] Installing pkg-1.10.5_2... [head-armv6-default-job-15] Extracting pkg-1.10.5_2: .......... done ===> pycogent-1.9_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of pycogent-1.9_1 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user [head-armv6-default-job-15] | | `-- Extracting gmp-6.1.2: .......... done [head-armv6-default-job-15] | | `-- Installing mpc-1.1.0_1... [head-armv6-default-job-15] | | `-- Installing mpfr-4.0.1... [head-armv6-default-job-15] | | `-- Extracting mpfr-4.0.1: .......... done [head-armv6-default-job-15] | | `-- Extracting mpc-1.1.0_1: ......... done [head-armv6-default-job-15] | `-- Extracting gcc7-7.3.0_5: .......... done [head-armv6-default-job-15] `-- Extracting blas-3.5.0_4: ....... done [head-armv6-default-job-15] `-- Installing cblas-1.0_9... [head-armv6-default-job-15] `-- Extracting cblas-1.0_9: ......... done [head-armv6-default-job-15] `-- Installing lapack-3.5.0_5... [head-armv6-default-job-15] `-- Extracting lapack-3.5.0_5: .......... done [head-armv6-default-job-15] `-- Installing py27-setuptools-40.0.0... [head-armv6-default-job-15] | `-- Installing python27-2.7.15... [head-armv6-default-job-15] | | `-- Installing libffi-3.2.1_2... [head-armv6-default-job-15] | | `-- Extracting libffi-3.2.1_2: .......... done [head-armv6-default-job-15] | | `-- Installing readline-7.0.3_1... [head-armv6-default-job-15] | | `-- Extracting readline-7.0.3_1: .......... done [head-armv6-default-job-15] | `-- Extracting python27-2.7.15: .......... done [head-armv6-default-job-15] `-- Extracting py27-setuptools-40.0.0: .......... done [head-armv6-default-job-15] `-- Installing suitesparse-5.2.0_1... [head-armv6-default-job-15] | `-- Installing metis-5.1.0_5... [head-armv6-default-job-15] | `-- Extracting metis-5.1.0_5: .......... done [head-armv6-default-job-15] | `-- Installing openblas-0.2.20_3,1... [head-armv6-default-job-15] | `-- Extracting openblas-0.2.20_3,1: ......... done [head-armv6-default-job-15] `-- Extracting suitesparse-5.2.0_1: .......... done [head-armv6-default-job-15] Extracting py27-numpy-1.15.0,1: .......... done Message from gcc7-7.3.0_5: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc7 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from cblas-1.0_9: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python27-2.7.15: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from metis-5.1.0_5: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> pycogent-1.9_1 depends on package: py27-numpy>0 - found ===> Returning to build of pycogent-1.9_1 ===> pycogent-1.9_1 depends on package: py27-sphinx>=0 - not found ===> Installing existing package /packages/All/py27-sphinx-1.6.5_1,1.txz [head-armv6-default-job-15] Installing py27-sphinx-1.6.5_1,1... [head-armv6-default-job-15] `-- Installing ca_root_nss-3.39... [head-armv6-default-job-15] `-- Extracting ca_root_nss-3.39: ........ done [head-armv6-default-job-15] `-- Installing py27-Babel-2.6.0... [head-armv6-default-job-15] | `-- Installing py27-pytz-2018.5,1... 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[head-armv6-default-job-15] | | `-- Extracting py27-openssl-17.5.0_1: .......... done [head-armv6-default-job-15] | | `-- Installing py27-pysocks-1.6.8... [head-armv6-default-job-15] | | `-- Extracting py27-pysocks-1.6.8: .......... done [head-armv6-default-job-15] | `-- Extracting py27-urllib3-1.22,1: .......... done [head-armv6-default-job-15] `-- Extracting py27-requests-2.18.4_1: .......... done [head-armv6-default-job-15] `-- Installing py27-snowballstemmer-1.2.0_1... [head-armv6-default-job-15] | `-- Installing py27-pystemmer-1.3.0_2... [head-armv6-default-job-15] | `-- Extracting py27-pystemmer-1.3.0_2: ......... done [head-armv6-default-job-15] `-- Extracting py27-snowballstemmer-1.2.0_1: .......... done [head-armv6-default-job-15] `-- Installing py27-sphinx_rtd_theme-0.4.0... [head-armv6-default-job-15] `-- Extracting py27-sphinx_rtd_theme-0.4.0: .......... done [head-armv6-default-job-15] `-- Installing py27-sphinxcontrib-websupport-1.0.1... [head-armv6-default-job-15] `-- Extracting py27-sphinxcontrib-websupport-1.0.1: .......... done [head-armv6-default-job-15] `-- Installing py27-typing-3.6.4... [head-armv6-default-job-15] `-- Extracting py27-typing-3.6.4: .......... done [head-armv6-default-job-15] Extracting py27-sphinx-1.6.5_1,1: .......... done Message from ca_root_nss-3.39: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from py27-urllib3-1.22,1: Be careful, support of IPv6 is broken with PySocks 1.5.7. ===> pycogent-1.9_1 depends on package: py27-sphinx>=0 - found ===> Returning to build of pycogent-1.9_1 ===> pycogent-1.9_1 depends on package: py27-sqlalchemy10>=1.0.13 - not found ===> Installing existing package /packages/All/py27-sqlalchemy10-1.0.14.txz [head-armv6-default-job-15] Installing py27-sqlalchemy10-1.0.14... [head-armv6-default-job-15] `-- Installing py27-sqlite3-2.7.15_7... [head-armv6-default-job-15] | `-- Installing sqlite3-3.24.0_1... [head-armv6-default-job-15] | `-- Extracting sqlite3-3.24.0_1: .......... done [head-armv6-default-job-15] `-- Extracting py27-sqlite3-2.7.15_7: ........ done [head-armv6-default-job-15] Extracting py27-sqlalchemy10-1.0.14: .......... done ===> pycogent-1.9_1 depends on package: py27-sqlalchemy10>=1.0.13 - found ===> Returning to build of pycogent-1.9_1 ===> pycogent-1.9_1 depends on executable: cython-2.7 - not found ===> Installing existing package /packages/All/py27-cython-0.28.2.txz [head-armv6-default-job-15] Installing py27-cython-0.28.2... [head-armv6-default-job-15] Extracting py27-cython-0.28.2: .......... done ===> pycogent-1.9_1 depends on executable: cython-2.7 - found ===> Returning to build of pycogent-1.9_1 ===> pycogent-1.9_1 depends on package: py27-setuptools>0 - found ===> pycogent-1.9_1 depends on file: /usr/local/bin/python2.7 - found =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for pycogent-1.9_1 Traceback (most recent call last): File "", line 1, in File "setup.py", line 26, in raise RuntimeError("Numpy required but not found.") RuntimeError: Numpy required but not found. *** Error code 1 Stop. make: stopped in /usr/ports/biology/pycogent