Date: Sat, 12 Dec 2020 10:14:34 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-armv6-default][science/qmcpack] Failed for qmcpack-3.10.0 in configure Message-ID: <202012121014.0BCAEYHd011632@beefy8.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: head/science/qmcpack/Makefile 555002 2020-11-13 05:10:06Z yuri $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p557257_s368425/logs/qmcpack-3.10.0.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p557257_s368425 Log: =>> Building science/qmcpack build started at Sat Dec 12 10:12:28 UTC 2020 port directory: /usr/ports/science/qmcpack package name: qmcpack-3.10.0 building for: FreeBSD head-armv6-default-job-06 13.0-CURRENT FreeBSD 13.0-CURRENT 1300131 arm maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/qmcpack/Makefile 555002 2020-11-13 05:10:06Z yuri $ Poudriere version: 3.2.8-8-gaf08dbda Host OSVERSION: 1300121 Jail OSVERSION: 1300131 Job Id: 06 !!! Jail is newer than host. (Jail: 1300131, Host: 1300121) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1300131 UNAME_v=FreeBSD 13.0-CURRENT 1300131 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-8-gaf08dbda MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/qmcpack/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/qmcpack/work HOME=/wrkdirs/usr/ports/science/qmcpack/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/qmcpack/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/qmcpack/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/qmcpack/work HOME=/wrkdirs/usr/ports/science/qmcpack/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/qmcpack/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fstack-prote ctor-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/catch2 -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/qmcpack" EXAMPLESDIR="share/examples/qmcpack" DATADIR="share/qmcpack" WWWDIR="www/qmcpack" ETCDIR="etc/qmcpack" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/qmcpack DOCSDIR=/usr/local/share/doc/qmcpack EXAMPLESDIR=/usr/local/share/examples/qmcpack WWWDIR=/usr/local/www/qmcpack ETCDIR=/usr/local/etc/qmcpack --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. 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[head-armv6-default-job-06] Extracting pkg-1.15.10: .......... done ===> qmcpack-3.10.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of qmcpack-3.10.0 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by qmcpack-3.10.0 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by qmcpack-3.10.0 for building <snip> ===== Message from python37-3.7.9_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===> qmcpack-3.10.0 depends on file: /usr/local/bin/python3.7 - found ===> Returning to build of qmcpack-3.10.0 ===> qmcpack-3.10.0 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ ===> qmcpack-3.10.0 depends on shared library: libboost_system.so - not found ===> Installing existing package /packages/All/boost-libs-1.72.0_3.txz [head-armv6-default-job-06] Installing boost-libs-1.72.0_3... [head-armv6-default-job-06] `-- Installing icu-68.1,1... [head-armv6-default-job-06] `-- Extracting icu-68.1,1: .......... done [head-armv6-default-job-06] Extracting boost-libs-1.72.0_3: .......... done ===== Message from boost-libs-1.72.0_3: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> qmcpack-3.10.0 depends on shared library: libboost_system.so - found (/usr/local/lib/libboost_system.so) ===> Returning to build of qmcpack-3.10.0 ===> qmcpack-3.10.0 depends on shared library: libfftw3.so - not found ===> Installing existing package /packages/All/fftw3-3.3.8_6.txz [head-armv6-default-job-06] Installing fftw3-3.3.8_6... [head-armv6-default-job-06] Extracting fftw3-3.3.8_6: .......... done ===> qmcpack-3.10.0 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> Returning to build of qmcpack-3.10.0 ===> qmcpack-3.10.0 depends on shared library: libhdf5.so - not found ===> Installing existing package /packages/All/hdf5-1.10.6,1.txz [head-armv6-default-job-06] Installing hdf5-1.10.6,1... [head-armv6-default-job-06] `-- Installing hdf-szip-2.1.1... [head-armv6-default-job-06] `-- Extracting hdf-szip-2.1.1: .......... done [head-armv6-default-job-06] Extracting hdf5-1.10.6,1: .......... done ===> qmcpack-3.10.0 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> Returning to build of qmcpack-3.10.0 ===> qmcpack-3.10.0 depends on shared library: libmpich.so - not found ===> Installing existing package /packages/All/mpich-3.2.1_6.txz [head-armv6-default-job-06] Installing mpich-3.2.1_6... [head-armv6-default-job-06] `-- Installing hwloc-1.11.13... [head-armv6-default-job-06] | `-- Installing libpciaccess-0.16... [head-armv6-default-job-06] | | `-- Installing pciids-20201025... [head-armv6-default-job-06] | | `-- Extracting pciids-20201025: ..... done [head-armv6-default-job-06] | `-- Extracting libpciaccess-0.16: ......... done [head-armv6-default-job-06] | `-- Installing libxml2-2.9.10_2... [head-armv6-default-job-06] | `-- Extracting libxml2-2.9.10_2: .......... done [head-armv6-default-job-06] `-- Extracting hwloc-1.11.13: .......... done [head-armv6-default-job-06] `-- Installing perl5-5.32.0_1... [head-armv6-default-job-06] `-- Extracting perl5-5.32.0_1: .......... done [head-armv6-default-job-06] Extracting mpich-3.2.1_6: .......... done ===== Message from mpich-3.2.1_6: -- ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> qmcpack-3.10.0 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> Returning to build of qmcpack-3.10.0 ===> qmcpack-3.10.0 depends on shared library: libopenblas.so - not found ===> Installing existing package /packages/All/openblas-0.3.12,1.txz [head-armv6-default-job-06] Installing openblas-0.3.12,1... [head-armv6-default-job-06] Extracting openblas-0.3.12,1: .......... done ===> qmcpack-3.10.0 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> Returning to build of qmcpack-3.10.0 ===> qmcpack-3.10.0 depends on shared library: libsz.so - found (/usr/local/lib/libsz.so) ===> qmcpack-3.10.0 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) =========================================================================== =======================<phase: configure >============================ ===> Configuring for qmcpack-3.10.0 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/qmcpack/work/.build -- The C compiler identification is Clang 11.0.0 -- The CXX compiler identification is Clang 11.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /nxb-bin/usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /nxb-bin/usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Python3: /usr/local/bin/python3.7 (found version "3.7.9") found components: Interpreter env: python3: No such file or directory -- Unable to import PySCF python module. PySCF tests will not be run. -- QMC_SYMLINK_TEST_FILES = ON. Using symbolic links for large test files may cause test failures if the build is installed on a separate filesystem from the source. For example, Titan at OLCF. -- CMAKE_BUILD_TYPE is RELEASE -- defining the float point precision Base precision = double Full precision = double -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for dlfcn.h -- Looking for dlfcn.h - found -- Looking for inttypes.h -- Looking for inttypes.h - found -- Looking for memory.h -- Looking for memory.h - found -- Looking for sys/stat.h -- Looking for sys/stat.h - found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Trying to figure out ..... -- Compiler: Clang -- libstdc++/C++ compiler version compatibility check failed CMake Error at CMake/Testlibstdc++.cmake:30 (message): Change Dir: /wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp Run Build Command(s):/usr/bin/make cmTC_7fd74/fast && /nxb-bin/usr/bin/make -f CMakeFiles/cmTC_7fd74.dir/build.make CMakeFiles/cmTC_7fd74.dir/build Building CXX object CMakeFiles/cmTC_7fd74.dir/try_libstdcxx.cpp.o /nxb-bin/usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/catch2 -isystem /usr/local/include -fopenmp -fstrict-aliasing -D__forceinline=inline -Wvla -Wall -Wno-unused-variable -Wno-overloaded-virtual -Wno-unused-private-field -Wno-unused-local-typedef -Wno-unknown-pragmas -Wmisleading-indentation -std=c++14 -o CMakeFiles/cmTC_7fd74.dir/try_libstdcxx.cpp.o -c /wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp/try_libstdcxx.cpp Linking CXX executable cmTC_7fd74 /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cmTC_7fd74.dir/link.txt --verbose=1 /nxb-bin/usr/bin/c++ -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -I/usr/local/include/catch2 -isystem /usr/local/include -fopenmp -fstrict-aliasing -D__forceinline=inline -Wvla -Wall -Wno-unused-variable -Wno-overloaded-virtual -Wno-unused-private-field -Wno-unused-local-typedef -Wno-unknown-pragmas -Wmisleading-indentation -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong -L/usr/local/lib CMakeFiles/cmTC_7fd74.dir/try_libstdcxx.cpp.o -o cmTC_7fd74 /usr/local/bin/ld: cannot find -lomp c++: error: linker command failed with exit code 1 (use -v to see invocation) *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeTmp Call Stack (most recent call first): CMakeLists.txt:412 (include) -- Configuring incomplete, errors occurred! See also "/wrkdirs/usr/ports/science/qmcpack/work/.build/CMakeFiles/CMakeOutput.log". *** Error code 1 Stop. make: stopped in /usr/ports/science/qmcpack
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