From owner-freebsd-ports-bugs@FreeBSD.ORG Sat Dec 24 23:00:32 2011 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 9B7991065692 for ; Sat, 24 Dec 2011 23:00:32 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id 7712E8FC16 for ; Sat, 24 Dec 2011 23:00:32 +0000 (UTC) Received: from freefall.freebsd.org (localhost [127.0.0.1]) by freefall.freebsd.org (8.14.5/8.14.5) with ESMTP id pBON0Wox039121 for ; Sat, 24 Dec 2011 23:00:32 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.5/8.14.5/Submit) id pBON0Wbr039119; Sat, 24 Dec 2011 23:00:32 GMT (envelope-from gnats) Resent-Date: Sat, 24 Dec 2011 23:00:32 GMT Resent-Message-Id: <201112242300.pBON0Wbr039119@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Rob Farmer Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id D88151065675 for ; Sat, 24 Dec 2011 22:57:18 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from red.freebsd.org (red.freebsd.org [IPv6:2001:4f8:fff6::22]) by mx1.freebsd.org (Postfix) with ESMTP id BD2AA8FC0A for ; Sat, 24 Dec 2011 22:57:18 +0000 (UTC) Received: from red.freebsd.org (localhost [127.0.0.1]) by red.freebsd.org (8.14.4/8.14.4) with ESMTP id pBOMvI03021459 for ; Sat, 24 Dec 2011 22:57:18 GMT (envelope-from nobody@red.freebsd.org) Received: (from nobody@localhost) by red.freebsd.org (8.14.4/8.14.4/Submit) id pBOMvIoE021458; Sat, 24 Dec 2011 22:57:18 GMT (envelope-from nobody) Message-Id: <201112242257.pBOMvIoE021458@red.freebsd.org> Date: Sat, 24 Dec 2011 22:57:18 GMT From: Rob Farmer To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-3.1 Cc: Subject: ports/163595: [patch] science/hdf5-18 Update to 1.8.8 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 24 Dec 2011 23:00:32 -0000 >Number: 163595 >Category: ports >Synopsis: [patch] science/hdf5-18 Update to 1.8.8 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: update >Submitter-Id: current-users >Arrival-Date: Sat Dec 24 23:00:32 UTC 2011 >Closed-Date: >Last-Modified: >Originator: Rob Farmer >Release: 10-CURRENT >Organization: >Environment: FreeBSD turquoise.predatorlabs.net 10.0-CURRENT FreeBSD 10.0-CURRENT #0: Sat Dec 24 01:03:56 PST 2011 rfarmer@turquoise.predatorlabs.net:/usr/obj/usr/src/sys/TURQUOISE amd64 >Description: -Update to 1.8.8 -Fix bad shell scripts; all regression tests pass now >How-To-Repeat: >Fix: Patch attached with submission follows: Index: Makefile =================================================================== RCS file: /home/ncvs/ports/science/hdf5-18/Makefile,v retrieving revision 1.63 diff -u -r1.63 Makefile --- Makefile 9 Nov 2011 15:25:42 -0000 1.63 +++ Makefile 22 Dec 2011 02:37:21 -0000 @@ -6,7 +6,7 @@ # PORTNAME= hdf5 -PORTVERSION= 1.8.7 +PORTVERSION= 1.8.8 CATEGORIES= science archivers graphics MASTER_SITES= ftp://ftp.hdfgroup.org/HDF5/prev-releases/hdf5-${PORTVERSION}/src/ #DISTNAME= ${PORTNAME}-${PORTVERSION}-patch1 @@ -62,6 +62,7 @@ -e 's|/share/hdf5_examples|/${EXAMPLESDIR_REL}|' \ -e 's|(INSTALL)|(INSTALL_DATA)|' \ `${FIND} ${WRKSRC} -regex '.*/examples/Makefile.in'` + @${REINPLACE_CMD} -e 's|\[ -a|\[ -f|g' `${FIND} ${WRKSRC} -name \*.sh\*` .if defined(NOPORTEXAMPLES) @${REINPLACE_CMD} -e '/^install:/ s|install-examples||' ${WRKSRC}/Makefile.in .endif Index: distinfo =================================================================== RCS file: /home/ncvs/ports/science/hdf5-18/distinfo,v retrieving revision 1.25 diff -u -r1.25 distinfo --- distinfo 15 Jul 2011 06:58:28 -0000 1.25 +++ distinfo 21 Dec 2011 05:18:39 -0000 @@ -1,2 +1,2 @@ -SHA256 (hdf5-1.8.7.tar.bz2) = 771761c9bec30b9a4137fa59ef88fdafdb0f4f35d1db0fd655f2591d19570fec -SIZE (hdf5-1.8.7.tar.bz2) = 5710170 +SHA256 (hdf5-1.8.8.tar.bz2) = b0ebb0b5478c6c0427631d4ad08f96e39f1b09fde615aa98d2a1b8fb7f6dced3 +SIZE (hdf5-1.8.8.tar.bz2) = 5827394 Index: pkg-plist =================================================================== RCS file: /home/ncvs/ports/science/hdf5-18/pkg-plist,v retrieving revision 1.29 diff -u -r1.29 pkg-plist --- pkg-plist 15 Jul 2011 06:58:28 -0000 1.29 +++ pkg-plist 21 Dec 2011 07:20:57 -0000 @@ -90,8 +90,12 @@ include/H5version.h %%FORTRAN%%include/h5_dble_interface.mod %%FORTRAN%%include/h5a.mod +%%FORTRAN%%include/h5a_provisional.mod %%FORTRAN%%include/h5d.mod +%%FORTRAN%%include/h5d_provisional.mod +%%FORTRAN%%include/h5ds.mod %%FORTRAN%%include/h5e.mod +%%FORTRAN%%include/h5e_provisional.mod %%FORTRAN%%include/h5f.mod %%FORTRAN%%include/h5fortran_types.mod %%FORTRAN%%include/h5g.mod @@ -99,13 +103,19 @@ %%FORTRAN%%include/h5i.mod %%FORTRAN%%include/h5im.mod %%FORTRAN%%include/h5l.mod +%%FORTRAN%%include/h5l_provisional.mod %%FORTRAN%%include/h5lib.mod +%%FORTRAN%%include/h5lib_provisional.mod %%FORTRAN%%include/h5lt.mod %%FORTRAN%%include/h5o.mod +%%FORTRAN%%include/h5o_provisional.mod %%FORTRAN%%include/h5p.mod +%%FORTRAN%%include/h5p_provisional.mod %%FORTRAN%%include/h5r.mod +%%FORTRAN%%include/h5r_provisional.mod %%FORTRAN%%include/h5s.mod %%FORTRAN%%include/h5t.mod +%%FORTRAN%%include/h5t_provisional.mod %%FORTRAN%%include/h5tb.mod %%FORTRAN%%include/h5z.mod include/hdf5.h @@ -188,6 +198,7 @@ %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ptExampleFL.c %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/ptExampleVL.c %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/c/run-hlc-ex.sh +%%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/fortran/ex_ds1.f90 %%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/fortran/exlite.f90 %%FORTRAN%%%%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/fortran/run-hlfortran-ex.sh %%PORTEXAMPLES%%%%EXAMPLESDIR%%/hl/run-hl-ex.sh Index: files/patch-src-H5FDdirect.c =================================================================== RCS file: /home/ncvs/ports/science/hdf5-18/files/patch-src-H5FDdirect.c,v retrieving revision 1.1 diff -u -r1.1 patch-src-H5FDdirect.c --- files/patch-src-H5FDdirect.c 24 Nov 2008 05:29:55 -0000 1.1 +++ files/patch-src-H5FDdirect.c 22 Dec 2011 00:51:02 -0000 @@ -1,11 +1,11 @@ ---- src/H5FDdirect.c.orig 2008-09-24 22:02:07.000000000 +0800 -+++ src/H5FDdirect.c 2008-09-24 22:02:38.000000000 +0800 +--- ./src/H5FDdirect.c.orig 2011-11-07 14:11:30.000000000 -0800 ++++ ./src/H5FDdirect.c 2011-12-21 16:50:03.000000000 -0800 @@ -29,6 +29,8 @@ * this file. */ /* #define _XOPEN_SOURCE 600 */ -+#define O_DIRECT 0x00010000 ++#define O_DIRECT 0x00010000 + - #include "H5private.h" /* Generic Functions */ - #include "H5Eprivate.h" /* Error handling */ - #include "H5Fprivate.h" /* File access */ + #include "H5private.h" /* Generic Functions */ + #include "H5Eprivate.h" /* Error handling */ + #include "H5Fprivate.h" /* File access */ >Release-Note: >Audit-Trail: >Unformatted: