From owner-freebsd-pkg-fallout@freebsd.org Wed May 9 00:06:33 2018 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 494C8FCEDB8 for ; Wed, 9 May 2018 00:06:33 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id D550D785F9 for ; Wed, 9 May 2018 00:06:32 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id 94B39FCEDB7; Wed, 9 May 2018 00:06:32 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 41D8FFCEDB6 for ; Wed, 9 May 2018 00:06:32 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id DDBA1785E0; Wed, 9 May 2018 00:06:31 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy11.nyi.freebsd.org (beefy11.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:ee]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id BF47117E2; Wed, 9 May 2018 00:06:31 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy11.nyi.freebsd.org (localhost [127.0.0.1]) by beefy11.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id w4906VRO044619; Wed, 9 May 2018 00:06:31 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy11.nyi.freebsd.org (8.15.2/8.15.2/Submit) id w4906VXC044618; Wed, 9 May 2018 00:06:31 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Wed, 9 May 2018 00:06:31 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201805090006.w4906VXC044618@beefy11.nyi.freebsd.org> To: jwb@FreeBSD.org Subject: [package - head-i386-default][biology/fastx-toolkit] Failed for fastx_toolkit-0.0.14 in build Cc: pkg-fallout@FreeBSD.org X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.25 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 09 May 2018 00:06:33 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Last committer: jwb@FreeBSD.org Ident: $FreeBSD: head/biology/fastx-toolkit/Makefile 460452 2018-01-31 01:07:07Z jwb $ Log URL: http://beefy11.nyi.freebsd.org/data/head-i386-default/p469346_s333344/logs/fastx_toolkit-0.0.14.log Build URL: http://beefy11.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p469346_s333344 Log: =>> Building biology/fastx-toolkit build started at Wed May 9 00:06:02 UTC 2018 port directory: /usr/ports/biology/fastx-toolkit package name: fastx_toolkit-0.0.14 building for: FreeBSD head-i386-default-job-03 12.0-CURRENT FreeBSD 12.0-CURRENT 1200062 i386 maintained by: jwb@FreeBSD.org Makefile ident: $FreeBSD: head/biology/fastx-toolkit/Makefile 460452 2018-01-31 01:07:07Z jwb $ Poudriere version: 3.2.6-3-g832b198d Host OSVERSION: 1200060 Jail OSVERSION: 1200062 Job Id: 03 !!! Jail is newer than host. (Jail: 1200062, Host: 1200060) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1200062 UNAME_v=FreeBSD 12.0-CURRENT 1200062 UNAME_r=12.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.6-3-g832b198d MASTERMNT=/usr/local/poudriere/data/.m/head-i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/fastx-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/fastx-toolkit/work HOME=/wrkdirs/usr/ports/biology/fastx-toolkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/fastx-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/fastx-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/fastx-toolkit/work HOME=/wrkdirs/usr/ports/biology/fastx-toolkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/fastx-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.26.2 PERL_VER=5.26 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.26 DOCSDIR="share/doc/fastx_toolkit" EXAMPLESDIR="share/examples/fastx_toolkit" DATADIR="share/fastx_toolkit" WWWDIR="www/fastx_toolkit" ETCDIR="etc/fastx_toolkit" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/fastx_toolkit DOCSDIR=/usr/local/share/doc/fastx_toolkit EXAMPLESDIR=/usr/local/share/examples/fastx_toolkit WWWDIR=/usr/local/www/fastx_toolkit ETCDIR=/usr/local/etc/fastx_toolkit --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: i386-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: i386-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: i386-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=12.0-CURRENT OSREL=12.0 OSVERSION=1200062 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License AGPLv3+ accepted by the user =========================================================================== =================================================== ===> fastx_toolkit-0.0.14 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5.txz [head-i386-default-job-03] Installing pkg-1.10.5... [head-i386-default-job-03] Extracting pkg-1.10.5: .......... done ===> fastx_toolkit-0.0.14 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of fastx_toolkit-0.0.14 =========================================================================== =================================================== =========================================================================== =================================================== ===> License AGPLv3+ accepted by the user ===> Fetching all distfiles required by fastx_toolkit-0.0.14 for building =========================================================================== =================================================== ===> License AGPLv3+ accepted by the user ===> Fetching all distfiles required by fastx_toolkit-0.0.14 for building => SHA256 Checksum OK for agordon-fastx_toolkit-0.0.14_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License AGPLv3+ accepted by the user ===> Fetching all distfiles required by fastx_toolkit-0.0.14 for building ===> Extracting for fastx_toolkit-0.0.14 => SHA256 Checksum OK for agordon-fastx_toolkit-0.0.14_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for fastx_toolkit-0.0.14 =========================================================================== =================================================== ===> fastx_toolkit-0.0.14 depends on executable: autoconf-2.69 - not found ===> Installing existing package /packages/All/autoconf-2.69_1.txz [head-i386-default-job-03] Installing autoconf-2.69_1... [head-i386-default-job-03] `-- Installing autoconf-wrapper-20131203... [head-i386-default-job-03] `-- Extracting autoconf-wrapper-20131203: .......... done [head-i386-default-job-03] `-- Installing indexinfo-0.3.1... [head-i386-default-job-03] `-- Extracting indexinfo-0.3.1: .... done [head-i386-default-job-03] `-- Installing m4-1.4.18,1... [head-i386-default-job-03] `-- Extracting m4-1.4.18,1: .......... done ===> Returning to build of fastx_toolkit-0.0.14 ===> fastx_toolkit-0.0.14 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.4.2,1.txz [head-i386-default-job-03] Installing pkgconf-1.4.2,1... [head-i386-default-job-03] Extracting pkgconf-1.4.2,1: .......... done ===> fastx_toolkit-0.0.14 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of fastx_toolkit-0.0.14 =========================================================================== =================================================== ===> fastx_toolkit-0.0.14 depends on shared library: libgtextutils.so - not found ===> Installing existing package /packages/All/libgtextutils-0.7.txz [head-i386-default-job-03] Installing libgtextutils-0.7... [head-i386-default-job-03] Extracting libgtextutils-0.7: .......... done ===> fastx_toolkit-0.0.14 depends on shared library: libgtextutils.so - found (/usr/local/lib/libgtextutils.so) ===> Returning to build of fastx_toolkit-0.0.14 =========================================================================== =================================================== ===> Configuring for fastx_toolkit-0.0.14 libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:20: installing 'config/compile' configure.ac:22: installing 'config/config.guess' configure.ac:22: installing 'config/config.sub' configure.ac:18: installing 'config/install-sh' configure.ac:18: installing 'config/missing' src/fasta_formatter/Makefile.am: installing 'config/depcomp' configure: loading site script /usr/ports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 checking build system type... i386-portbld-freebsd12.0 checking host system type... i386-portbld-freebsd12.0 checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking how to convert i386-portbld-freebsd12.0 file names to i386-portbld-freebsd12.0 format... func_convert_file_noop checking how to convert i386-portbld-freebsd12.0 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from cc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... yes checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... freebsd12.0 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... c++ -E checking for ld used by c++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd12.0 ld.so checking how to hardcode library paths into programs... immediate checking for long long int... yes checking for ISO C++ TR1 include files... yes checking whether c++ supports C++11 features by default... yes checking pkg-config is at least version 0.9.0... yes checking for GTEXTUTILS... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating doc/Makefile config.status: creating m4/Makefile config.status: creating src/Makefile config.status: creating src/libfastx/Makefile config.status: creating src/fastx_clipper/Makefile config.status: creating src/fastq_to_fasta/Makefile config.status: creating src/fastx_quality_stats/Makefile config.status: creating src/fastq_quality_converter/Makefile config.status: creating src/fastx_trimmer/Makefile config.status: creating src/fastq_quality_filter/Makefile config.status: creating src/fastq_quality_trimmer/Makefile config.status: creating src/fastx_artifacts_filter/Makefile config.status: creating src/fastx_reverse_complement/Makefile config.status: creating src/fastx_collapser/Makefile config.status: creating src/fastx_uncollapser/Makefile config.status: creating src/seqalign_test/Makefile config.status: creating src/fasta_formatter/Makefile config.status: creating src/fasta_nucleotide_changer/Makefile config.status: creating src/fastx_renamer/Makefile config.status: creating src/fastq_masker/Makefile config.status: creating galaxy/Makefile config.status: creating galaxy/tools/Makefile config.status: creating galaxy/tools/fastx_toolkit/Makefile config.status: creating galaxy/test-data/Makefile config.status: creating galaxy/static/Makefile config.status: creating galaxy/static/fastx_icons/Makefile config.status: creating galaxy/tool-data/Makefile config.status: creating scripts/Makefile config.status: creating build_scripts/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands =========================================================================== =================================================== ===> Building for fastx_toolkit-0.0.14 /usr/bin/make all-recursive Making all in m4 Making all in src Making all in libfastx cc -DHAVE_CONFIG_H -I. -I../.. -O2 -pipe -fstack-protector -fno-strict-aliasing -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT chomp.o -MD -MP -MF .deps/chomp.Tpo -c -o chomp.o chomp.c mv -f .deps/chomp.Tpo .deps/chomp.Po cc -DHAVE_CONFIG_H -I. -I../.. -O2 -pipe -fstack-protector -fno-strict-aliasing -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT fastx.o -MD -MP -MF .deps/fastx.Tpo -c -o fastx.o fastx.c fastx.c:29:10: error: the current #pragma pack aligment value is modified in the included file [-Werror,-Wpragma-pack] #include "fastx.h" ^ ./fastx.h:61:9: note: previous '#pragma pack' directive that modifies alignment is here #pragma pack(1) ^ 1 error generated. *** Error code 1 Stop. make[4]: stopped in /wrkdirs/usr/ports/biology/fastx-toolkit/work/fastx_toolkit-0.0.14/src/libfastx *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/biology/fastx-toolkit/work/fastx_toolkit-0.0.14/src *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/fastx-toolkit/work/fastx_toolkit-0.0.14 *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/fastx-toolkit/work/fastx_toolkit-0.0.14 *** Error code 1 Stop. make: stopped in /usr/ports/biology/fastx-toolkit