Date: Sun, 22 Oct 2017 01:35:46 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 110armv6-quarterly][science/nifticlib] Failed for nifticlib-2.0.0_1 in build Message-ID: <201710220135.v9M1ZkWl043730@beefy15.nyi.freebsd.org>
next in thread | raw e-mail | index | archive | help
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: bacon4000@gmail.com Last committer: rakuco@FreeBSD.org Ident: $FreeBSD: branches/2017Q4/science/nifticlib/Makefile 429778 2016-12-28 14:54:37Z rakuco $ Log URL: http://beefy15.nyi.freebsd.org/data/110armv6-quarterly/452586/logs/nifticlib-2.0.0_1.log Build URL: http://beefy15.nyi.freebsd.org/build.html?mastername=110armv6-quarterly&build=452586 Log: ====>> Building science/nifticlib build started at Sun Oct 22 01:35:36 UTC 2017 port directory: /usr/ports/science/nifticlib building for: FreeBSD 110armv6-quarterly-job-22 11.0-RELEASE-p13 FreeBSD 11.0-RELEASE-p13 1100122 arm maintained by: bacon4000@gmail.com Makefile ident: $FreeBSD: branches/2017Q4/science/nifticlib/Makefile 429778 2016-12-28 14:54:37Z rakuco $ Poudriere version: 3.1.21 Host OSVERSION: 1200040 Jail OSVERSION: 1100122 Job Id: 22 ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1100122 UNAME_v=FreeBSD 11.0-RELEASE-p13 1100122 UNAME_r=11.0-RELEASE-p13 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/110armv6-quarterly/ref QEMU_EMULATING=1 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=nifticlib-2.0.0_1 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/110armv6-quarterly/ref/.p/pool MASTERNAME=110armv6-quarterly SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.21 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/nifticlib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/nifticlib/work HOME=/wrkdirs/usr/ports/science/nifticlib/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/nifticlib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/nifticlib/work HOME=/wrkdirs/usr/ports/science/nifticlib/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fPIC -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fPIC -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/nifticlib" EXAMPLESDIR="share/examples/nifticlib" DATADIR="share/nifticlib" WWWDIR="www/nifticlib" ETCDIR="etc/nifticlib" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/nifticlib DOCSDIR=/usr/local/share/doc/nifticlib EXAMPLESDIR=/usr/local/share/examples/nifticlib WWWDIR=/usr/local/www/nifticlib ETCDIR=/usr/local/etc/nifticlib --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=armv6 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=11.0 OSVERSION=1100122 PYTHONBASE=/usr/local UID=0 _JAVA_OS_LIST_REGEXP=native|linux _JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun _JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.6\+|1.7\+|1.8\+ _OSRELEASE=11.0-RELEASE-p13 #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License PD accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> nifticlib-2.0.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz pkg-static: Warning: Major OS version upgrade detected. Running "pkg-static install -f pkg" recommended [110armv6-quarterly-job-22] Installing pkg-1.10.1... [110armv6-quarterly-job-22] Extracting pkg-1.10.1: .......... done ===> nifticlib-2.0.0_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of nifticlib-2.0.0_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License PD accepted by the user ===> Fetching all distfiles required by nifticlib-2.0.0_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License PD accepted by the user ===> Fetching all distfiles required by nifticlib-2.0.0_1 for building => SHA256 Checksum OK for nifticlib-2.0.0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License PD accepted by the user ===> Fetching all distfiles required by nifticlib-2.0.0_1 for building ===> Extracting for nifticlib-2.0.0_1 => SHA256 Checksum OK for nifticlib-2.0.0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for nifticlib-2.0.0_1 ===> Applying FreeBSD patches for nifticlib-2.0.0_1 =========================================================================== =======================<phase: build-depends >============================ ===> nifticlib-2.0.0_1 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_1.txz pkg-static: Warning: Major OS version upgrade detected. Running "pkg-static install -f pkg" recommended <snip> nim->intent_p1 = FIXED_FLOAT( nhdr.intent_p1 ) ; ^ ./nifti1_io.h:516:29: note: expanded from macro 'FIXED_FLOAT' # define FIXED_FLOAT(x) (isfinite(x) ? (x) : 0) /* fixed if bad */ ^ /usr/include/math.h:111:21: note: expanded from macro 'isfinite' #define isfinite(x) __fp_type_select(x, __isfinitef, __isfinite, __isfinitel) ^ /usr/include/math.h:82:39: note: expanded from macro '__fp_type_select' #define __fp_type_select(x, f, d, ld) _Generic((x), \ ^ nifti1_io.c:3818:22: warning: generic selections are a C11-specific feature [-Wc11-extensions] nim->intent_p2 = FIXED_FLOAT( nhdr.intent_p2 ) ; ^ ./nifti1_io.h:516:29: note: expanded from macro 'FIXED_FLOAT' # define FIXED_FLOAT(x) (isfinite(x) ? (x) : 0) /* fixed if bad */ ^ /usr/include/math.h:111:21: note: expanded from macro 'isfinite' #define isfinite(x) __fp_type_select(x, __isfinitef, __isfinite, __isfinitel) ^ /usr/include/math.h:82:39: note: expanded from macro '__fp_type_select' #define __fp_type_select(x, f, d, ld) _Generic((x), \ ^ nifti1_io.c:3819:22: warning: generic selections are a C11-specific feature [-Wc11-extensions] nim->intent_p3 = FIXED_FLOAT( nhdr.intent_p3 ) ; ^ ./nifti1_io.h:516:29: note: expanded from macro 'FIXED_FLOAT' # define FIXED_FLOAT(x) (isfinite(x) ? (x) : 0) /* fixed if bad */ ^ /usr/include/math.h:111:21: note: expanded from macro 'isfinite' #define isfinite(x) __fp_type_select(x, __isfinitef, __isfinite, __isfinitel) ^ /usr/include/math.h:82:39: note: expanded from macro '__fp_type_select' #define __fp_type_select(x, f, d, ld) _Generic((x), \ ^ nifti1_io.c:3821:22: warning: generic selections are a C11-specific feature [-Wc11-extensions] nim->toffset = FIXED_FLOAT( nhdr.toffset ) ; ^ ./nifti1_io.h:516:29: note: expanded from macro 'FIXED_FLOAT' # define FIXED_FLOAT(x) (isfinite(x) ? (x) : 0) /* fixed if bad */ ^ /usr/include/math.h:111:21: note: expanded from macro 'isfinite' #define isfinite(x) __fp_type_select(x, __isfinitef, __isfinite, __isfinitel) ^ /usr/include/math.h:82:39: note: expanded from macro '__fp_type_select' #define __fp_type_select(x, f, d, ld) _Generic((x), \ ^ nifti1_io.c:3835:27: warning: generic selections are a C11-specific feature [-Wc11-extensions] nim->slice_duration = FIXED_FLOAT(nhdr.slice_duration) ; ^ ./nifti1_io.h:516:29: note: expanded from macro 'FIXED_FLOAT' # define FIXED_FLOAT(x) (isfinite(x) ? (x) : 0) /* fixed if bad */ ^ /usr/include/math.h:111:21: note: expanded from macro 'isfinite' #define isfinite(x) __fp_type_select(x, __isfinitef, __isfinite, __isfinitel) ^ /usr/include/math.h:82:39: note: expanded from macro '__fp_type_select' #define __fp_type_select(x, f, d, ld) _Generic((x), \ ^ nifti1_io.c:3840:18: warning: generic selections are a C11-specific feature [-Wc11-extensions] nim->cal_min = FIXED_FLOAT(nhdr.cal_min) ; ^ ./nifti1_io.h:516:29: note: expanded from macro 'FIXED_FLOAT' # define FIXED_FLOAT(x) (isfinite(x) ? (x) : 0) /* fixed if bad */ ^ /usr/include/math.h:111:21: note: expanded from macro 'isfinite' #define isfinite(x) __fp_type_select(x, __isfinitef, __isfinite, __isfinitel) ^ /usr/include/math.h:82:39: note: expanded from macro '__fp_type_select' #define __fp_type_select(x, f, d, ld) _Generic((x), \ ^ nifti1_io.c:3841:18: warning: generic selections are a C11-specific feature [-Wc11-extensions] nim->cal_max = FIXED_FLOAT(nhdr.cal_max) ; ^ ./nifti1_io.h:516:29: note: expanded from macro 'FIXED_FLOAT' # define FIXED_FLOAT(x) (isfinite(x) ? (x) : 0) /* fixed if bad */ ^ /usr/include/math.h:111:21: note: expanded from macro 'isfinite' #define isfinite(x) __fp_type_select(x, __isfinitef, __isfinite, __isfinitel) ^ /usr/include/math.h:82:39: note: expanded from macro '__fp_type_select' #define __fp_type_select(x, f, d, ld) _Generic((x), \ ^ nifti1_io.c:4544:28: warning: format specifies type 'void *' but the argument has type 'const char *' [-Wformat-pedantic] (void *)ext, data, len); ^~~~ nifti1_io.c:4792:23: warning: format specifies type 'void *' but the argument has type 'char *' [-Wformat-pedantic] nim->iname, nim->nbyper, (unsigned)nim->nvox); ^~~~~~~~~~ nifti1_io.c:4978:17: warning: generic selections are a C11-specific feature [-Wc11-extensions] if( !IS_GOOD_FLOAT(far[jj]) ){ ^ ./nifti1_io.h:515:28: note: expanded from macro 'IS_GOOD_FLOAT' # define IS_GOOD_FLOAT(x) isfinite(x) /* check if x is a "good" float */ ^ /usr/include/math.h:111:21: note: expanded from macro 'isfinite' #define isfinite(x) __fp_type_select(x, __isfinitef, __isfinite, __isfinitel) ^ /usr/include/math.h:82:39: note: expanded from macro '__fp_type_select' #define __fp_type_select(x, f, d, ld) _Generic((x), \ ^ nifti1_io.c:4990:17: warning: generic selections are a C11-specific feature [-Wc11-extensions] if( !IS_GOOD_FLOAT(far[jj]) ){ ^ ./nifti1_io.h:515:28: note: expanded from macro 'IS_GOOD_FLOAT' # define IS_GOOD_FLOAT(x) isfinite(x) /* check if x is a "good" float */ ^ /usr/include/math.h:111:21: note: expanded from macro 'isfinite' #define isfinite(x) __fp_type_select(x, __isfinitef, __isfinite, __isfinitel) ^ /usr/include/math.h:82:39: note: expanded from macro '__fp_type_select' #define __fp_type_select(x, f, d, ld) _Generic((x), \ ^ 24 warnings generated. ar -r libniftiio.a nifti1_io.o ar: warning: creating libniftiio.a ranlib libniftiio.a mkdir -p lib gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/niftilib' ----------- niftilib build completed. gmake -C nifticdf depend lib gmake[2]: Entering directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/nifticdf' /nxb-bin/usr/bin/cc -MM -I../niftilib -I../nifticdf nifticdf.c >> depend.mk rm -f -f depend.mk /usr/local/bin/gmake depend.mk gmake[3]: Entering directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/nifticdf' /nxb-bin/usr/bin/cc -MM -I../niftilib -I../nifticdf nifticdf.c >> depend.mk gmake[3]: 'depend.mk' is up to date. gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/nifticdf' /nxb-bin/usr/bin/cc -c -O2 -pipe -fPIC -fno-strict-aliasing -ansi -pedantic -ansi -pedantic -DHAVE_ZLIB -I../niftilib -I../nifticdf nifticdf.c nifticdf.c:10867:41: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] pq.q = exp(-abs(val)) ; pq.p = 1.0-pq.q; break; ^ nifticdf.c:10867:41: note: use function 'fabs' instead pq.q = exp(-abs(val)) ; pq.p = 1.0-pq.q; break; ^~~ fabs nifticdf.c:10869:45: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value] pq.q = pow(10.,-abs(val)); pq.p = 1.0-pq.q; break; ^ nifticdf.c:10869:45: note: use function 'fabs' instead pq.q = pow(10.,-abs(val)); pq.p = 1.0-pq.q; break; ^~~ fabs 2 warnings generated. ar -r libnifticdf.a nifticdf.o ar: warning: creating libnifticdf.a ranlib libnifticdf.a mkdir -p lib gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/nifticdf' ----------- nifticdf build completed. gmake -C fsliolib depend lib gmake[2]: Entering directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/fsliolib' /nxb-bin/usr/bin/cc -MM -I/usr/include -I../znzlib -I../niftilib fslio.c >> depend.mk rm -f -f depend.mk /usr/local/bin/gmake depend.mk gmake[3]: Entering directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/fsliolib' /nxb-bin/usr/bin/cc -MM -I/usr/include -I../znzlib -I../niftilib fslio.c >> depend.mk gmake[3]: 'depend.mk' is up to date. gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/fsliolib' /nxb-bin/usr/bin/cc -c -O2 -pipe -fPIC -fno-strict-aliasing -ansi -pedantic -ansi -pedantic -I/usr/include -I../znzlib -I../niftilib fslio.c ar -r libfslio.a fslio.o ar: warning: creating libfslio.a mkdir -p lib gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/fsliolib' ---------- fsliolib build completed. (cp znzlib/*.a lib; cp znzlib/*.h include;) ranlib lib/*.a znzlib installed. (cp niftilib/*.a lib; cp niftilib/*.h include;) ranlib lib/*.a niftilib installed. (cp nifticdf/*.a lib; cp nifticdf/*.h include;) ranlib lib/*.a niftilib installed. (cp fsliolib/*.a lib; cp fsliolib/*.h include;) ranlib lib/*.a fsliolib installed. gmake -C utils all gmake[2]: Entering directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/utils' /nxb-bin/usr/bin/cc -O2 -pipe -fPIC -fno-strict-aliasing -ansi -pedantic -o nifti_stats nifti_stats.c -I../include -I/usr/include -L../lib -lnifticdf -L../lib -lniftiio -L/usr/lib -L../lib -lznz -lm -lz ./lib/libnifticdf.a(nifticdf.o): In function `psi': nifticdf.c:(.text+0xdb0): undefined reference to `sincos' nifticdf.c:(.text+0xdd4): undefined reference to `sincos' cc: error: linker command failed with exit code 1 (use -v to see invocation) gmake[2]: *** [Makefile:49: nifti_stats] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0/utils' gmake[1]: *** [Makefile:145: utils] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/nifticlib/work/nifticlib-2.0.0' *** Error code 1 Stop. make: stopped in /usr/ports/science/nifticlib
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201710220135.v9M1ZkWl043730>