Date: Sat, 21 Jan 2017 01:25:26 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 110armv6-quarterly][science/netcdf-fortran] Failed for netcdf-fortran-4.4.4_1 in configure Message-ID: <201701210125.v0L1PQbu062768@beefy15.nyi.freebsd.org>
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Maintainer: sunpoet@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: branches/2017Q1/science/netcdf-fortran/Makefile 428057 2016-12-07 13:24:56Z gerald $ Log URL: http://beefy15.nyi.freebsd.org/data/110armv6-quarterly/431992/logs/netcdf-fortran-4.4.4_1.log Build URL: http://beefy15.nyi.freebsd.org/build.html?mastername=110armv6-quarterly&build=431992 Log: ====>> Building science/netcdf-fortran build started at Sat Jan 21 01:23:10 UTC 2017 port directory: /usr/ports/science/netcdf-fortran building for: FreeBSD 110armv6-quarterly-job-28 11.0-RELEASE-p5 FreeBSD 11.0-RELEASE-p5 r309692 arm maintained by: sunpoet@FreeBSD.org Makefile ident: $FreeBSD: branches/2017Q1/science/netcdf-fortran/Makefile 428057 2016-12-07 13:24:56Z gerald $ Poudriere version: 3.1.14 Host OSVERSION: 1200017 Jail OSVERSION: 1100122 Job Id: 28 ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o UNAME_v=FreeBSD 11.0-RELEASE-p5 r309692 UNAME_r=11.0-RELEASE-p5 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=armv6 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/110armv6-quarterly/ref QEMU_EMULATING=1 UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=netcdf-fortran-4.4.4_1 OSREL=11.0 _OSRELEASE=11.0-RELEASE-p5 PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=28 PWD=/usr/local/poudriere/data/.m/110armv6-quarterly/ref/.p/pool MASTERNAME=110armv6-quarterly SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.14 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1100122 ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran49" FC="gfortran49" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc49" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc49" XDG_DATA_HOME=/wrkdirs/usr/ports/science/netcdf-fortran/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/netcdf-fortran/work HOME=/wrkdirs/usr/ports/science/netcdf-fortran/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- MAKEINFOFLAGS=--no-split F77="gfortran49" FC="gfortran49" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc49" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc49" XDG_DATA_HOME=/wrkdirs/usr/ports/science/netcdf-fortran/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/netcdf-fortran/work HOME=/wrkdirs/usr/ports/science/netcdf-fortran/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -isystem /usr/local/include -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-fPIC -DPIC - DgFortran -isystem /usr/local/include" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc49 -L/usr/local/lib/gcc49 -B/usr/local/bin" LIBS="-L/usr/local/lib" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/netcdf-fortran" EXAMPLESDIR="share/examples/netcdf-fortran" DATADIR="share/netcdf-fortran" WWWDIR="www/netcdf-fortran" ETCDIR="etc/netcdf-fortran" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/netcdf-fortran DOCSDIR=/usr/local/share/doc/netcdf-fortran EXAMPLESDIR=/usr/local/share/examples/netcdf-fortran WWWDIR=/usr/local/www/netcdf-fortran ETCDIR=/usr/local/etc/netcdf-fortran --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- =======================<phase: check-sanity >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> netcdf-fortran-4.4.4_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.9.4_1.txz pkg-static: Warning: Major OS version upgrade detected. Running "pkg-static install -f pkg" recommended [110armv6-quarterly-job-28] Installing pkg-1.9.4_1... [110armv6-quarterly-job-28] Extracting pkg-1.9.4_1: .......... done ===> netcdf-fortran-4.4.4_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of netcdf-fortran-4.4.4_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> Fetching all distfiles required by netcdf-fortran-4.4.4_1 for building =========================================================================== =======================<phase: checksum >============================ ===> Fetching all distfiles required by netcdf-fortran-4.4.4_1 for building => SHA256 Checksum OK for Unidata-netcdf-fortran-v4.4.4_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> Fetching all distfiles required by netcdf-fortran-4.4.4_1 for building ===> Extracting for netcdf-fortran-4.4.4_1 => SHA256 Checksum OK for Unidata-netcdf-fortran-v4.4.4_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for netcdf-fortran-4.4.4_1 =========================================================================== =======================<phase: build-depends >============================ ===> netcdf-fortran-4.4.4_1 depends on executable: gfortran49 - not found ===> Installing existing package /packages/All/gcc-4.9.4.txz pkg-static: Warning: Major OS version upgrade detected. Running "pkg-static install -f pkg" recommended [110armv6-quarterly-job-28] Installing gcc-4.9.4... [110armv6-quarterly-job-28] `-- Installing indexinfo-0.2.6... [110armv6-quarterly-job-28] `-- Extracting indexinfo-0.2.6: .... done [110armv6-quarterly-job-28] `-- Installing mpc-1.0.3... [110armv6-quarterly-job-28] | `-- Installing gmp-5.1.3_3... [110armv6-quarterly-job-28] | `-- Extracting gmp-5.1.3_3: .......... done [110armv6-quarterly-job-28] | `-- Installing mpfr-3.1.5... [110armv6-quarterly-job-28] | `-- Extracting mpfr-3.1.5: .......... done [110armv6-quarterly-job-28] `-- Extracting mpc-1.0.3: ...... done [110armv6-quarterly-job-28] `-- Installing binutils-2.27_5,1... [110armv6-quarterly-job-28] | `-- Installing gettext-runtime-0.19.8.1_1... [110armv6-quarterly-job-28] | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done [110armv6-quarterly-job-28] `-- Extracting binutils-2.27_5,1: .......... done [110armv6-quarterly-job-28] Extracting gcc-4.9.4: .......... done Message from gcc-4.9.4: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc49 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> netcdf-fortran-4.4.4_1 depends on executable: gfortran49 - found ===> Returning to build of netcdf-fortran-4.4.4_1 ===> netcdf-fortran-4.4.4_1 depends on executable: makeinfo - not found ===> Installing existing package /packages/All/texinfo-6.1.20160425,1.txz pkg-static: Warning: Major OS version upgrade detected. Running "pkg-static install -f pkg" recommended [110armv6-quarterly-job-28] Installing texinfo-6.1.20160425,1... [110armv6-quarterly-job-28] `-- Installing perl5-5.24.1.r4_1... [110armv6-quarterly-job-28] `-- Extracting perl5-5.24.1.r4_1: .......... done [110armv6-quarterly-job-28] Extracting texinfo-6.1.20160425,1: .......... done Message from perl5-5.24.1.r4_1: The /usr/bin/perl symlink has been removed starting with Perl 5.20. <snip> ===> Returning to build of netcdf-fortran-4.4.4_1 ===> netcdf-fortran-4.4.4_1 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ ===> netcdf-fortran-4.4.4_1 depends on shared library: libnetcdf.so - not found ===> Installing existing package /packages/All/netcdf-4.4.1.1.txz pkg-static: Warning: Major OS version upgrade detected. Running "pkg-static install -f pkg" recommended [110armv6-quarterly-job-28] Installing netcdf-4.4.1.1... [110armv6-quarterly-job-28] `-- Installing pkgconf-1.1.0... [110armv6-quarterly-job-28] `-- Extracting pkgconf-1.1.0: .......... done [110armv6-quarterly-job-28] `-- Installing hdf-szip-2.1_2... [110armv6-quarterly-job-28] `-- Extracting hdf-szip-2.1_2: ........ done [110armv6-quarterly-job-28] `-- Installing hdf5-1.10.0_2... [110armv6-quarterly-job-28] `-- Extracting hdf5-1.10.0_2: .......... done [110armv6-quarterly-job-28] `-- Installing curl-7.52.1_1... [110armv6-quarterly-job-28] | `-- Installing libnghttp2-1.18.0... [110armv6-quarterly-job-28] | `-- Extracting libnghttp2-1.18.0: .......... done [110armv6-quarterly-job-28] | `-- Installing ca_root_nss-3.28.1... [110armv6-quarterly-job-28] | `-- Extracting ca_root_nss-3.28.1: ........ done [110armv6-quarterly-job-28] `-- Extracting curl-7.52.1_1: .......... done [110armv6-quarterly-job-28] Extracting netcdf-4.4.1.1: .......... done Message from ca_root_nss-3.28.1: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> netcdf-fortran-4.4.4_1 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) ===> Returning to build of netcdf-fortran-4.4.4_1 =========================================================================== =======================<phase: configure >============================ ===> Configuring for netcdf-fortran-4.4.4_1 configure: loading site script /usr/ports/Templates/config.site configure: netCDF-Fortran 4.4.4 checking build system type... armv6-portbld-freebsd11.0 checking host system type... armv6-portbld-freebsd11.0 checking target system type... armv6-portbld-freebsd11.0 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no configure: checking user options checking whether extra valgrind tests should be run... no checking whether parallel IO tests should be run... no checking whether netCDF extra tests should be run (developers only)... no checking for doxygen... no configure: WARNING: Doxygen not found - documentation will not be built checking for dot... no configure: WARNING: dot not found - will use simple charts in documentation configure: finding C compiler checking for gcc... /nxb-bin/usr/bin/cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /nxb-bin/usr/bin/cc accepts -g... yes checking for /nxb-bin/usr/bin/cc option to accept ISO C89... none needed checking whether /nxb-bin/usr/bin/cc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of /nxb-bin/usr/bin/cc... gcc3 checking for an ANSI C-conforming const... yes configure: finding Fortran compiler checking whether we are using the GNU Fortran compiler... yes checking whether gfortran49 accepts -g... yes checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran49 accepts -g... yes checking whether Fortran compiler is checked for ISO_C_BINDING support... yes checking for Fortran flag to compile .f90 files... none checking fortran 90 modules inclusion flag... -I checking if Fortran compiler supports Fortran 2003 ISO_C_BINDING... yes checking if Fortran compiler supports Fortran 2008 ISO_FORTRAN_ENV additions... yes checking if Fortran compiler supports TS29113 standard extension... yes checking whether F03 native code is desired... yes checking whether fortran type sizes should be checked... yes checking whether large file (> 2GB) tests should be run... no checking whether benchmarks should be run (experimental)... no checking where to put large temp files if large file tests are run... . configure: setting up libtool checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by /nxb-bin/usr/bin/cc... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm checking the name lister (/usr/local/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... no checking how to convert armv6-portbld-freebsd11.0 file names to armv6-portbld-freebsd11.0 format... func_convert_file_noop checking how to convert armv6-portbld-freebsd11.0 file names to toolchain format... func_convert_file_noop checking for /usr/local/bin/ld option to reload object files... -r checking for objdump... /usr/local/bin/objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... /usr/local/bin/ranlib checking command to parse /usr/local/bin/nm output from /nxb-bin/usr/bin/cc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... /nxb-bin/usr/bin/cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if /nxb-bin/usr/bin/cc supports -fno-rtti -fno-exceptions... yes checking for /nxb-bin/usr/bin/cc option to produce PIC... -fPIC -DPIC checking if /nxb-bin/usr/bin/cc PIC flag -fPIC -DPIC works... yes checking if /nxb-bin/usr/bin/cc static flag -static works... yes checking if /nxb-bin/usr/bin/cc supports -c -o file.o... yes checking if /nxb-bin/usr/bin/cc supports -c -o file.o... (cached) yes checking whether the /nxb-bin/usr/bin/cc linker (/usr/local/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... freebsd11.0 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran49 option to produce PIC... -fPIC checking if gfortran49 PIC flag -fPIC works... yes checking if gfortran49 static flag -static works... yes checking if gfortran49 supports -c -o file.o... yes checking if gfortran49 supports -c -o file.o... (cached) yes checking whether the gfortran49 linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd11.0 ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran49 option to produce PIC... -fPIC checking if gfortran49 PIC flag -fPIC works... yes checking if gfortran49 static flag -static works... yes checking if gfortran49 supports -c -o file.o... yes checking if gfortran49 supports -c -o file.o... (cached) yes checking whether the gfortran49 linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... freebsd11.0 ld.so checking how to hardcode library paths into programs... immediate configure: finding other utilities configure: trying to set fortran flags for this platform checking what FC is set to... gfortran49 checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for /usr/local/bin/nm... /usr/local/bin/nm checking nm flags... checking for C-equivalent to Fortran routine "SUB"... sub_ checking for Fortran "byte"... yes checking for Fortran "integer*2"... yes checking if Fortran "byte" is C "signed char"... configure: error: Could not link conftestf.o and conftest.o ===> Script "configure" failed unexpectedly. Please report the problem to sunpoet@FreeBSD.org [maintainer] and attach the "/wrkdirs/usr/ports/science/netcdf-fortran/work/netcdf-fortran-4.4.4/config.log" including the output of the failure of your make command. Also, it might be a good idea to provide an overview of all packages installed on your system (e.g. a /usr/local/sbin/pkg-static info -g -Ea). *** Error code 1 Stop. make: stopped in /usr/ports/science/netcdf-fortran
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