Date: Thu, 31 Dec 2020 01:36:51 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 121arm64-quarterly][science/nest] Failed for nest-2.20.0_1 in configure Message-ID: <202012310136.0BV1apgn005255@ampere1.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: jbeich@FreeBSD.org Ident: $FreeBSD: branches/2020Q4/science/nest/Makefile 528082 2020-03-08 21:56:36Z jbeich $ Log URL: http://ampere1.nyi.freebsd.org/data/121arm64-quarterly/559696/logs/nest-2.20.0_1.log Build URL: http://ampere1.nyi.freebsd.org/build.html?mastername=121arm64-quarterly&build=559696 Log: =>> Building science/nest build started at Thu Dec 31 01:36:35 UTC 2020 port directory: /usr/ports/science/nest package name: nest-2.20.0_1 building for: FreeBSD 121arm64-quarterly-job-01 12.1-RELEASE FreeBSD 12.1-RELEASE arm64 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: branches/2020Q4/science/nest/Makefile 528082 2020-03-08 21:56:36Z jbeich $ Poudriere version: 3.2.8-8-gaf08dbda Host OSVERSION: 1300121 Jail OSVERSION: 1201000 Job Id: 01 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1201000 UNAME_v=FreeBSD 12.1-RELEASE UNAME_r=12.1-RELEASE BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-8-gaf08dbda MASTERMNT=/usr/local/poudriere/data/.m/121arm64-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/121arm64-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=121arm64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/121arm64-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for nest-2.20.0_1: DOCS=on: Build and/or install documentation PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/nest/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/nest/work HOME=/wrkdirs/usr/ports/science/nest/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/nest/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/nest/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/nest/work HOME=/wrkdirs/usr/ports/science/nest/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/nest/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/nest/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" DOCS="" NO_DOCS="@comment " PYTHON="" NO_PYTHON="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=freebsd12 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=12.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/nest" EXAMPLESDIR="share/examples/nest" DATADIR="share/nest" WWWDIR="www/nest" ETCDIR="etc/nest" --End PLIST_SUB-- --SUB_LIST-- DOCS="" NO_DOCS="@comment " PYTHON="" NO_PYTHON="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/nest DOCSDIR=/usr/local/share/doc/nest EXAMPLESDIR=/usr/local/share/examples/nest WWWDIR=/usr/local/www/nest ETCDIR=/usr/local/etc/nest --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: aarch64-unknown-freebsd12.1 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: aarch64-unknown-freebsd12.1 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: aarch64-unknown-freebsd12.1 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=aarch64 OPSYS=FreeBSD _OSRELEASE=12.1-RELEASE OSREL=12.1 OSVERSION=1201000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> nest-2.20.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.15.10.txz [121arm64-quarterly-job-01] Installing pkg-1.15.10... [121arm64-quarterly-job-01] Extracting pkg-1.15.10: .......... done ===> nest-2.20.0_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of nest-2.20.0_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by nest-2.20.0_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by nest-2.20.0_1 for building => SHA256 Checksum OK for nest-nest-simulator-v2.20.0_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by nest-2.20.0_1 for building ===> Extracting for nest-2.20.0_1 => SHA256 Checksum OK for nest-nest-simulator-v2.20.0_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for nest-2.20.0_1 ===> Applying FreeBSD patches for nest-2.20.0_1 from /usr/ports/science/nest/files =========================================================================== =======================<phase: build-depends >============================ ===> nest-2.20.0_1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.18.3.txz [121arm64-quarterly-job-01] Installing cmake-3.18.3... [121arm64-quarterly-job-01] `-- Installing curl-7.74.0... [121arm64-quarterly-job-01] | `-- Installing ca_root_nss-3.58... [121arm64-quarterly-job-01] | `-- Extracting ca_root_nss-3.58: ........ done [121arm64-quarterly-job-01] | `-- Installing libnghttp2-1.41.0... [121arm64-quarterly-job-01] | `-- Extracting libnghttp2-1.41.0: .......... done [121arm64-quarterly-job-01] `-- Extracting curl-7.74.0: .......... done [121arm64-quarterly-job-01] `-- Installing expat-2.2.8... [121arm64-quarterly-job-01] `-- Extracting expat-2.2.8: .......... done [121arm64-quarterly-job-01] `-- Installing jsoncpp-1.9.4... [121arm64-quarterly-job-01] `-- Extracting jsoncpp-1.9.4: .......... done [121arm64-quarterly-job-01] `-- Installing libarchive-3.4.3,1... [121arm64-quarterly-job-01] | `-- Installing liblz4-1.9.2_1,1... [121arm64-quarterly-job-01] | `-- Extracting liblz4-1.9.2_1,1: .......... done [121arm64-quarterly-job-01] | `-- Installing lzo2-2.10_1... [121arm64-quarterly-job-01] | `-- Extracting lzo2-2.10_1: .......... done [121arm64-quarterly-job-01] `-- Extracting libarchive-3.4.3,1: .......... done [121arm64-quarterly-job-01] `-- Installing libuv-1.40.0... [121arm64-quarterly-job-01] `-- Extracting libuv-1.40.0: .......... done [121arm64-quarterly-job-01] `-- Installing rhash-1.3.9... [121arm64-quarterly-job-01] | `-- Installing gettext-runtime-0.21... [121arm64-quarterly-job-01] | | `-- Installing indexinfo-0.3.1... [121arm64-quarterly-job-01] | | `-- Extracting indexinfo-0.3.1: .... done [121arm64-quarterly-job-01] | `-- Extracting gettext-runtime-0.21: .......... done [121arm64-quarterly-job-01] `-- Extracting rhash-1.3.9: .......... done [121arm64-quarterly-job-01] Extracting cmake-3.18.3: .......... done ===== Message from ca_root_nss-3.58: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===> nest-2.20.0_1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of nest-2.20.0_1 ===> nest-2.20.0_1 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.10.1,2.txz [121arm64-quarterly-job-01] Installing ninja-1.10.1,2... [121arm64-quarterly-job-01] `-- Installing python37-3.7.9... [121arm64-quarterly-job-01] | `-- Installing libffi-3.3_1... [121arm64-quarterly-job-01] | `-- Extracting libffi-3.3_1: .......... done [121arm64-quarterly-job-01] | `-- Installing readline-8.0.4... [121arm64-quarterly-job-01] | `-- Extracting readline-8.0.4: .......... done [121arm64-quarterly-job-01] `-- Extracting python37-3.7.9: .......... done [121arm64-quarterly-job-01] Extracting ninja-1.10.1,2: ........ done ===== Message from python37-3.7.9: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===> nest-2.20.0_1 depends on executable: ninja - found ===> Returning to build of nest-2.20.0_1 ===> nest-2.20.0_1 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.7.3,1.txz [121arm64-quarterly-job-01] Installing pkgconf-1.7.3,1... [121arm64-quarterly-job-01] Extracting pkgconf-1.7.3,1: .......... done ===> nest-2.20.0_1 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of nest-2.20.0_1 ===> nest-2.20.0_1 depends on executable: cython-3.7 - not found ===> Installing existing package /packages/All/py37-cython-0.29.15.txz [121arm64-quarterly-job-01] Installing py37-cython-0.29.15... [121arm64-quarterly-job-01] `-- Installing py37-setuptools-44.0.0... [121arm64-quarterly-job-01] `-- Extracting py37-setuptools-44.0.0: .......... done [121arm64-quarterly-job-01] Extracting py37-cython-0.29.15: .......... done ===> nest-2.20.0_1 depends on executable: cython-3.7 - found ===> Returning to build of nest-2.20.0_1 ===> nest-2.20.0_1 depends on file: /usr/local/bin/python3.7 - found =========================================================================== =======================<phase: lib-depends >============================ ===> nest-2.20.0_1 depends on shared library: libgsl.so - not found ===> Installing existing package /packages/All/gsl-2.6.txz [121arm64-quarterly-job-01] Installing gsl-2.6... [121arm64-quarterly-job-01] Extracting gsl-2.6: .......... done ===> nest-2.20.0_1 depends on shared library: libgsl.so - found (/usr/local/lib/libgsl.so) ===> Returning to build of nest-2.20.0_1 ===> nest-2.20.0_1 depends on shared library: libltdl.so - not found ===> Installing existing package /packages/All/libltdl-2.4.6.txz [121arm64-quarterly-job-01] Installing libltdl-2.4.6... [121arm64-quarterly-job-01] Extracting libltdl-2.4.6: .......... done ===> nest-2.20.0_1 depends on shared library: libltdl.so - found (/usr/local/lib/libltdl.so) ===> Returning to build of nest-2.20.0_1 ===> nest-2.20.0_1 depends on shared library: libreadline.so.8 - found (/usr/local/lib/libreadline.so.8) =========================================================================== =======================<phase: configure >============================ ===> Configuring for nest-2.20.0_1 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/nest/work/.build -- The CXX compiler identification is Clang 8.0.1 -- The C compiler identification is Clang 8.0.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Looking for include file inttypes.h -- Looking for include file inttypes.h - found -- Looking for include file mach-o/dyld.h -- Looking for include file mach-o/dyld.h - not found -- Looking for include file mach/mach.h -- Looking for include file mach/mach.h - not found -- Looking for include file memory.h -- Looking for include file memory.h - found -- Looking for include file stdint.h -- Looking for include file stdint.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for C++ include istream -- Looking for C++ include istream - found -- Looking for C++ include ostream -- Looking for C++ include ostream - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of long long -- Check size of long long - done -- Check size of u_int16_t -- Check size of u_int16_t - done -- Check size of uint16_t -- Check size of uint16_t - done -- Check size of u_int64_t -- Check size of u_int64_t - done -- Check size of uint64_t -- Check size of uint64_t - done -- Looking for NAN -- Looking for NAN - found -- Looking for isnan -- Looking for isnan - found -- Looking for M_E -- Looking for M_E - found -- Looking for M_PI -- Looking for M_PI - found -- Looking for expm1 -- Looking for expm1 - not found -- Host triple: aarch64-pc-freebsd -- Target triple: aarch64-pc-freebsd -- Found LTDL: /usr/local/lib/libltdl.so -- Found Readline: /usr/local/lib/libreadline.so (found version "8.0") -- Found PkgConfig: pkgconf (found version "1.7.3") -- Found GSL: /usr/local/include (found version "2.6") -- Found PythonInterp: /usr/local/bin/python3.7 (found version "3.7.9") -- Found PythonLibs: /usr/local/lib/libpython3.7m.so (found suitable exact version "3.7.9") -- Found Cython: /usr/local/bin/cython-3.7 (found version "0.29.15") -- Could NOT find OpenMP_C (missing: OpenMP_C_FLAGS OpenMP_C_LIB_NAMES) -- Could NOT find OpenMP_CXX (missing: OpenMP_CXX_FLAGS OpenMP_CXX_LIB_NAMES) -- Could NOT find OpenMP (missing: OpenMP_C_FOUND OpenMP_CXX_FOUND) CMake Error at cmake/ProcessOptions.cmake:456 (message): CMake can not find OpenMP. Call Stack (most recent call first): CMakeLists.txt:156 (nest_process_with_openmp) -- Configuring incomplete, errors occurred! See also "/wrkdirs/usr/ports/science/nest/work/.build/CMakeFiles/CMakeOutput.log". See also "/wrkdirs/usr/ports/science/nest/work/.build/CMakeFiles/CMakeError.log". *** Error code 1 Stop. make: stopped in /usr/ports/science/nest
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