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From: Piotr Kubaj <pkubaj@FreeBSD.org>
Date: Tue, 2 Mar 2021 15:01:55 +0000 (UTC)
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Subject: svn commit: r566960 - head/biology/bwa
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Author: pkubaj
Date: Tue Mar  2 15:01:55 2021
New Revision: 566960
URL: https://svnweb.freebsd.org/changeset/ports/566960

Log:
  biology/bwa: fix build on powerpc64le
  
  Use GCC's SSE->Altivec translation:
  In file included from ksw.c:29:
  In file included from /usr/lib/clang/11.0.1/include/emmintrin.h:13:
  In file included from /usr/lib/clang/11.0.1/include/xmmintrin.h:13:
  /usr/lib/clang/11.0.1/include/mmintrin.h:50:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size
      return (__m64)__builtin_ia32_vec_init_v2si(__i, 0);

Modified:
  head/biology/bwa/Makefile

Modified: head/biology/bwa/Makefile
==============================================================================
--- head/biology/bwa/Makefile	Tue Mar  2 14:46:41 2021	(r566959)
+++ head/biology/bwa/Makefile	Tue Mar  2 15:01:55 2021	(r566960)
@@ -31,11 +31,14 @@ GH_ACCOUNT=	lh3
 
 PLIST_FILES=	bin/bwa bin/qualfa2fq.pl bin/xa2multi.pl man/man1/bwa.1.gz
 
-.include <bsd.port.pre.mk>
+.include <bsd.port.options.mk>
 
 .if ${ARCH} == amd64 || ${ARCH} == i386
 # Avoid #error in emmintrin.h
 CFLAGS+=	-msse2
+.elif ${ARCH} == powerpc64le
+CFLAGS+=	-DNO_WARN_X86_INTRINSICS
+USES+=	compiler:gcc-c++11-lib
 .endif
 
 do-install:
@@ -43,4 +46,4 @@ do-install:
 	${INSTALL_SCRIPT} ${WRKSRC}/*.pl ${STAGEDIR}${PREFIX}/bin
 	${INSTALL_MAN} ${WRKSRC}/*.1 ${STAGEDIR}${MAN1PREFIX}/man/man1
 
-.include <bsd.port.post.mk>
+.include <bsd.port.mk>