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Date:      Thu, 18 Apr 2019 02:38:13 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 120powerpc64-quarterly][biology/canu] Failed for canu-1.8_2 in build
Message-ID:  <201904180238.x3I2cDAO038216@pylon.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     jwb@FreeBSD.org
Last committer: gerald@FreeBSD.org
Ident:          $FreeBSD: branches/2019Q2/biology/canu/Makefile 487272 2018-12-12 01:35:33Z gerald $
Log URL:        http://pylon.nyi.freebsd.org/data/120powerpc64-quarterly/499227/logs/canu-1.8_2.log
Build URL:      http://pylon.nyi.freebsd.org/build.html?mastername=120powerpc64-quarterly&build=499227
Log:

=>> Building biology/canu
build started at Thu Apr 18 02:35:14 UTC 2019
port directory: /usr/ports/biology/canu
package name: canu-1.8_2
building for: FreeBSD 120powerpc64-quarterly-job-20 12.0-RELEASE-p3 FreeBSD 12.0-RELEASE-p3 1200086 powerpc
maintained by: jwb@FreeBSD.org
Makefile ident:      $FreeBSD: branches/2019Q2/biology/canu/Makefile 487272 2018-12-12 01:35:33Z gerald $
Poudriere version: 3.2.8-3-g02cc9753
Host OSVERSION: 1300012
Jail OSVERSION: 1200086
Job Id: 20

---Begin Environment---
SHELL=/bin/csh
OSVERSION=1200086
UNAME_v=FreeBSD 12.0-RELEASE-p3 1200086
UNAME_r=12.0-RELEASE-p3
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-3-g02cc9753
MASTERMNT=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=120powerpc64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/120powerpc64-quarterly/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
jwb@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/canu/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/canu/work  HOME=/wrkdirs/usr/ports/biology/canu/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/canu/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
DESTDIR=/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/canu/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/canu/work  HOME=/wrkdirs/usr/ports/biology/canu/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/canu/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -fno-strict-aliasing "  CPP="cpp" CPPFLAGS=""  LDFLAGS=" " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing  "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
JAVASHAREDIR="share/java"  JAVAJARDIR="share/java/classes" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.28.1  PERL_VER=5.28  PERL5_MAN1=lib/perl5/site_perl/man/man1  PERL5_MAN3=lib/perl5/site_perl/man/man3  SITE_PERL=lib/perl5/site_perl  SITE_ARCH=lib/perl5/site_perl/mach/5.28 DOCSDIR="share/doc/canu"  EXAMPLESDIR="share/examples/canu"  DATADIR="share/canu"  WWWDIR="www/canu"  ETCDIR="etc/canu"
--End PLIST_SUB--

--SUB_LIST--
JAVASHAREDIR="/usr/local/share/java"  JAVAJARDIR="/usr/local/share/java/classes"  JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="1.8+" PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/canu DOCSDIR=/usr/local/share/doc/canu EXAMPLESDIR=/usr/local/share/examples/canu  WWWDIR=/usr/local/www/canu ETCDIR=/usr/local/etc/canu
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2

# stable/10 includes src.conf too late but make.conf is in sys.mk
.if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*}
# Disable build of llib now that head no longer has lint(1)
LINT=	true
.endif
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=Using built-in specs. Target: powerpc64-undermydesk-freebsd Configured with: FreeBSD/powerpc64 system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-Qy" "-melf64ppc_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtsavres.o" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11"
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11"
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x"
CC_OUTPUT_921dbbb2_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11"
CC_OUTPUT_921dbbb2_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14"
CC_OUTPUT_921dbbb2_f2776b26=cc1plus: error: unrecognized command line option "-std=c++17"
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11"
CC_OUTPUT_921dbbb2_160933ec=cc1plus: error: unrecognized command line option "-std=gnu++14"
CC_OUTPUT_921dbbb2_fb62803b=cc1plus: error: unrecognized command line option "-std=gnu++17"
_OBJC_CCVERSION_921dbbb2=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=powerpc64
OPSYS=FreeBSD
_OSRELEASE=12.0-RELEASE-p3
OSREL=12.0
OSVERSION=1200086
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   canu-1.8_2 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[120powerpc64-quarterly-job-20] Installing pkg-1.10.5_5...
[120powerpc64-quarterly-job-20] Extracting pkg-1.10.5_5: .......... done
===>   canu-1.8_2 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of canu-1.8_2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by canu-1.8_2 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by canu-1.8_2 for building
=> SHA256 Checksum OK for marbl-canu-v1.8_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by canu-1.8_2 for building
===>  Extracting for canu-1.8_2
=> SHA256 Checksum OK for marbl-canu-v1.8_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for canu-1.8_2
===>  Applying FreeBSD patches for canu-1.8_2
/usr/bin/sed -i.bak  -e 's|-O4||g'  -e 's|-funroll-loops||g'  -e 's|-fexpensive-optimizations||g'  -e 's|amd64|powerpc64|g'  /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/Makefile
/usr/bin/sed -i.bak -e 's|\\$bin/mhap-|/usr/local/share/java/classes/mhap-|g'  /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/pipelines/canu/OverlapMhap.pm
/usr/bin/sed -i.bak -e 's|RealBin/lib|RealBin/../lib/perl5/site_perl/canu|g'  /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/pipelines/canu.pl
===========================================================================
=======================<phase: build-depends  >============================
===>   canu-1.8_2 depends on executable: gmake - not found
===>   Installing existing package /packages/All/gmake-4.2.1_3.txz
[120powerpc64-quarterly-job-20] Installing gmake-4.2.1_3...
[120powerpc64-quarterly-job-20] `-- Installing gettext-runtime-0.19.8.1_2...
[120powerpc64-quarterly-job-20] |   `-- Installing indexinfo-0.3.1...
[120powerpc64-quarterly-job-20] |   `-- Extracting indexinfo-0.3.1: .... done
[120powerpc64-quarterly-job-20] `-- Extracting gettext-runtime-0.19.8.1_2: .......... done
[120powerpc64-quarterly-job-20] Extracting gmake-4.2.1_3: .......... done
===>   canu-1.8_2 depends on executable: gmake - found
===>   Returning to build of canu-1.8_2
===>   canu-1.8_2 depends on package: perl5>=5.28.r1<5.29 - not found
<snip>
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-extend.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap overlapInCore/liboverlap/prefixEditDistance-extend.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-forward.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap overlapInCore/liboverlap/prefixEditDistance-forward.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-reverse.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap overlapInCore/liboverlap/prefixEditDistance-reverse.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/overlapInCore/libedlib/edlib.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap overlapInCore/libedlib/edlib.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libNDalign/NDalign.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libNDalign/NDalign.C
utgcns/libNDalign/NDalign.C: In member function 'bool NDalign::processHits()':
utgcns/libNDalign/NDalign.C:660: warning: deprecated conversion from string constant to 'char*'
utgcns/libNDalign/NDalign.C: In member function 'bool NDalign::scanDeltaForBadness(bool, bool)':
utgcns/libNDalign/NDalign.C:724: warning: deprecated conversion from string constant to 'char*'
utgcns/libNDalign/NDalign.C: In member function 'void NDalign::realignForward(bool, bool)':
utgcns/libNDalign/NDalign.C:774: warning: deprecated conversion from string constant to 'char*'
utgcns/libNDalign/NDalign.C: In member function 'void NDalign::realignBackward(bool, bool)':
utgcns/libNDalign/NDalign.C:838: warning: deprecated conversion from string constant to 'char*'
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libNDalign/Binomial_Bound.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libNDalign/Binomial_Bound.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libNDalign/NDalgorithm.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-allocateMoreSpace.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libNDalign/NDalgorithm-allocateMoreSpace.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-extend.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libNDalign/NDalgorithm-extend.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-forward.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libNDalign/NDalgorithm-forward.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-reverse.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libNDalign/NDalgorithm-reverse.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abAbacus-addRead.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abAbacus-addRead.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abAbacus-appendBases.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abAbacus-appendBases.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abAbacus-applyAlignment.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abAbacus-applyAlignment.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abAbacus-baseCall.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abAbacus-baseCall.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abAbacus-mergeRefine.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abAbacus-mergeRefine.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abAbacus-refine.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abAbacus-refine.C
utgcns/libcns/abAbacus-refine.C:1326:2: warning: #warning SKIPPING ALL REFINEMENTS
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abAbacus-refreshMultiAlign.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abAbacus-refreshMultiAlign.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abAbacus.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abAbacus.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abColumn.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abColumn.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/abMultiAlign.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/abMultiAlign.C
c++ -o /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/unitigConsensus.o -c -MD -O2 -pipe -fno-strict-aliasing -DNOBACKTRACE -I/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src -Iutility -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/libedlib -IoverlapInCore/liboverlap utgcns/libcns/unitigConsensus.C
In file included from utgcns/libboost/boost/graph/adjacency_list.hpp:15,
                 from utgcns/libpbutgcns/AlnGraphBoost.H:69,
                 from utgcns/libcns/unitigConsensus.C:77:
utgcns/libboost/boost/config.hpp:57:33: error: boost/config/platform/bsd.hpp: No such file or directory
In file included from utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:29,
                 from utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:28,
                 from utgcns/libboost/boost/shared_ptr.hpp:17,
                 from utgcns/libboost/boost/property_map/vector_property_map.hpp:14,
                 from utgcns/libboost/boost/property_map/property_map.hpp:600,
                 from utgcns/libboost/boost/graph/adjacency_list.hpp:36,
                 from utgcns/libpbutgcns/AlnGraphBoost.H:69,
                 from utgcns/libcns/unitigConsensus.C:77:
utgcns/libboost/boost/smart_ptr/detail/sp_counted_base.hpp:57:63: error: boost/smart_ptr/detail/sp_counted_base_gcc_ppc.hpp: No such file or directory
In file included from utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:30,
                 from utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:28,
                 from utgcns/libboost/boost/shared_ptr.hpp:17,
                 from utgcns/libboost/boost/property_map/vector_property_map.hpp:14,
                 from utgcns/libboost/boost/property_map/property_map.hpp:600,
                 from utgcns/libboost/boost/graph/adjacency_list.hpp:36,
                 from utgcns/libpbutgcns/AlnGraphBoost.H:69,
                 from utgcns/libcns/unitigConsensus.C:77:
utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:54: error: expected class-name before '{' token
utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:81: error: 'get_deleter' declared as a 'virtual' field
utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:81: error: expected ';' before '(' token
utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:86: error: expected `;' before 'virtual'
utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:128: error: expected class-name before '{' token
utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:156: error: 'get_deleter' declared as a 'virtual' field
utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:156: error: expected ';' before '(' token
utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:161: error: expected `;' before 'virtual'
utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:196: error: expected class-name before '{' token
utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:252: error: 'get_deleter' declared as a 'virtual' field
utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:252: error: expected ';' before '(' token
utgcns/libboost/boost/smart_ptr/detail/sp_counted_impl.hpp:257: error: expected `;' before 'virtual'
In file included from utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:28,
                 from utgcns/libboost/boost/shared_ptr.hpp:17,
                 from utgcns/libboost/boost/property_map/vector_property_map.hpp:14,
                 from utgcns/libboost/boost/property_map/property_map.hpp:600,
                 from utgcns/libboost/boost/graph/adjacency_list.hpp:36,
                 from utgcns/libpbutgcns/AlnGraphBoost.H:69,
                 from utgcns/libcns/unitigConsensus.C:77:
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:104: error: ISO C++ forbids declaration of 'sp_counted_base' with no type
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:104: error: expected ';' before '*' token
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:518: error: expected ';' before '(' token
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:523: error: expected `;' before 'void'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::shared_count::shared_count()':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:114: error: class 'boost::detail::shared_count' does not have any field named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::shared_count::shared_count(Y*)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:121: error: class 'boost::detail::shared_count' does not have any field named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:130: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::shared_count::shared_count(P, D)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:154: error: class 'boost::detail::shared_count' does not have any field named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:167: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::shared_count::shared_count(P, boost::detail::sp_inplace_tag<D>)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:190: error: class 'boost::detail::shared_count' does not have any field named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:199: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::shared_count::shared_count(P, D, A)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:222: error: class 'boost::detail::shared_count' does not have any field named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:253: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:262: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::shared_count::shared_count(P, boost::detail::sp_inplace_tag<D>, A)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:306: error: class 'boost::detail::shared_count' does not have any field named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:337: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:346: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::shared_count::shared_count(std::auto_ptr<T>&)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:395: error: class 'boost::detail::shared_count' does not have any field named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In destructor 'boost::detail::shared_count::~shared_count()':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:443: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In copy constructor 'boost::detail::shared_count::shared_count(const boost::detail::shared_count&)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:449: error: class 'boost::detail::shared_count' does not have any field named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:449: error: 'const class boost::detail::shared_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:454: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'boost::detail::shared_count& boost::detail::shared_count::operator=(const boost::detail::shared_count&)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:474: error: 'sp_counted_base' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:474: error: 'tmp' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:474: error: 'const class boost::detail::shared_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:476: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'void boost::detail::shared_count::swap(boost::detail::shared_count&)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:488: error: 'sp_counted_base' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:488: error: 'tmp' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:488: error: 'class boost::detail::shared_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:489: error: 'class boost::detail::shared_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:489: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'long int boost::detail::shared_count::use_count() const':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:495: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'bool boost::detail::shared_count::empty() const':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:505: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In function 'bool boost::detail::operator==(const boost::detail::shared_count&, const boost::detail::shared_count&)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:510: error: 'const class boost::detail::shared_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:510: error: 'const class boost::detail::shared_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In function 'bool boost::detail::operator<(const boost::detail::shared_count&, const boost::detail::shared_count&)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:515: error: 'sp_counted_base' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:515: error: template argument 1 is invalid
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:515: error: 'const class boost::detail::shared_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:515: error: 'const class boost::detail::shared_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'void* boost::detail::shared_count::get_untyped_deleter() const':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:525: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: At global scope:
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:534: error: ISO C++ forbids declaration of 'sp_counted_base' with no type
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:534: error: expected ';' before '*' token
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::weak_count::weak_count()':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:544: error: class 'boost::detail::weak_count' does not have any field named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::weak_count::weak_count(const boost::detail::shared_count&)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:551: error: class 'boost::detail::weak_count' does not have any field named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:551: error: 'const class boost::detail::shared_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:556: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In copy constructor 'boost::detail::weak_count::weak_count(const boost::detail::weak_count&)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:559: error: class 'boost::detail::weak_count' does not have any field named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:559: error: 'const class boost::detail::weak_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:564: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In destructor 'boost::detail::weak_count::~weak_count()':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:583: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'boost::detail::weak_count& boost::detail::weak_count::operator=(const boost::detail::shared_count&)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:591: error: 'sp_counted_base' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:591: error: 'tmp' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:591: error: 'const class boost::detail::shared_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:593: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'boost::detail::weak_count& boost::detail::weak_count::operator=(const boost::detail::weak_count&)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:605: error: 'sp_counted_base' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:605: error: 'tmp' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:605: error: 'const class boost::detail::weak_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:607: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'void boost::detail::weak_count::swap(boost::detail::weak_count&)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:619: error: 'sp_counted_base' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:619: error: 'tmp' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:619: error: 'class boost::detail::weak_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:620: error: 'class boost::detail::weak_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:620: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'long int boost::detail::weak_count::use_count() const':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:626: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In member function 'bool boost::detail::weak_count::empty() const':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:631: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In function 'bool boost::detail::operator==(const boost::detail::weak_count&, const boost::detail::weak_count&)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:636: error: 'const class boost::detail::weak_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:636: error: 'const class boost::detail::weak_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In function 'bool boost::detail::operator<(const boost::detail::weak_count&, const boost::detail::weak_count&)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:641: error: 'sp_counted_base' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:641: error: template argument 1 is invalid
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:641: error: 'const class boost::detail::weak_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:641: error: 'const class boost::detail::weak_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::shared_count::shared_count(const boost::detail::weak_count&)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:645: error: class 'boost::detail::shared_count' does not have any field named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:645: error: 'const class boost::detail::weak_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:650: error: 'pi_' was not declared in this scope
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp: In constructor 'boost::detail::shared_count::shared_count(const boost::detail::weak_count&, boost::detail::sp_nothrow_tag)':
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:656: error: class 'boost::detail::shared_count' does not have any field named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:656: error: 'const class boost::detail::weak_count' has no member named 'pi_'
utgcns/libboost/boost/smart_ptr/detail/shared_count.hpp:661: error: 'pi_' was not declared in this scope
In file included from utgcns/libboost/boost/shared_ptr.hpp:17,
                 from utgcns/libboost/boost/property_map/vector_property_map.hpp:14,
                 from utgcns/libboost/boost/property_map/property_map.hpp:600,
                 from utgcns/libboost/boost/graph/adjacency_list.hpp:36,
                 from utgcns/libpbutgcns/AlnGraphBoost.H:69,
                 from utgcns/libcns/unitigConsensus.C:77:
utgcns/libboost/boost/smart_ptr/shared_ptr.hpp: At global scope:
utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:695: error: expected ';' before '(' token
utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:700: error: expected `;' before 'void'
utgcns/libboost/boost/smart_ptr/shared_ptr.hpp: In function 'D* boost::detail::basic_get_deleter(const boost::shared_ptr<U>&)':
utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:887: error: expected primary-expression before ')' token
utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:887: error: there are no arguments to 'BOOST_SP_TYPEID' that depend on a template parameter, so a declaration of 'BOOST_SP_TYPEID' must be available
utgcns/libboost/boost/smart_ptr/shared_ptr.hpp:887: error: (if you use '-fpermissive', G++ will accept your code, but allowing the use of an undeclared name is deprecated)
utgcns/libcns/unitigConsensus.C: In member function 'bool unitigConsensus::alignFragment(bool)':
utgcns/libcns/unitigConsensus.C:1562: warning: deprecated conversion from string constant to 'char*'
utgcns/libcns/unitigConsensus.C:1660: warning: deprecated conversion from string constant to 'char*'
gmake[1]: *** [Makefile:708: /wrkdirs/usr/ports/biology/canu/work/canu-1.8/src/usr/local/FreeBSD-powerpc/obj/lib/libcanu.a/utgcns/libcns/unitigConsensus.o] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/canu/work/canu-1.8/src'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/canu



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