Date: Sat, 24 Jun 2017 09:50:22 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 110arm64-quarterly][biology/seqan-apps] Failed for seqan-apps-2.2.0_3 in build Message-ID: <201706240950.v5O9oMla035132@thunderx1.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: h2+fbsdports@fsfe.org Last committer: jbeich@FreeBSD.org Ident: $FreeBSD: branches/2017Q2/biology/seqan-apps/Makefile 437538 2017-04-02 09:08:47Z jbeich $ Log URL: http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/444183/logs/seqan-apps-2.2.0_3.log Build URL: http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=444183 Log: ====>> Building biology/seqan-apps build started at Sat Jun 24 03:22:11 UTC 2017 port directory: /usr/ports/biology/seqan-apps building for: FreeBSD 110arm64-quarterly-job-07 11.0-RELEASE-p1 FreeBSD 11.0-RELEASE-p1 arm64 maintained by: h2+fbsdports@fsfe.org Makefile ident: $FreeBSD: branches/2017Q2/biology/seqan-apps/Makefile 437538 2017-04-02 09:08:47Z jbeich $ Poudriere version: 3.1.19-40-ga434dff0 Host OSVERSION: 1100121 Jail OSVERSION: 1100122 Job Id: 07 !!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1100122 UNAME_v=FreeBSD 11.0-RELEASE-p1 UNAME_r=11.0-RELEASE-p1 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=seqan-apps-2.2.0_3 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool MASTERNAME=110arm64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.19-40-ga434dff0 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc5" CFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing" CPP="cpp5" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5" LIBS="" CXX="g++5" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5" MANP REFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" RM_I386="" OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/seqan-apps" EXAMPLESDIR="share/examples/seqan-apps" DATADIR="share/seqan-apps" WWWDIR="www/seqan-apps" ETCDIR="etc/seqan-apps" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seqan-apps DOCSDIR=/usr/local/share/doc/seqan-apps EXAMPLESDIR=/usr/local/share/examples/seqan-apps WWWDIR=/usr/local/www/seqan-apps ETCDIR=/usr/local/etc/seqan-apps --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=aarch64 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=11.0 OSVERSION=1100122 PYTHONBASE=/usr/local UID=0 _JAVA_OS_LIST_REGEXP=native\|linux _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ _OSRELEASE=11.0-RELEASE-p1 #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD3CLAUSE LGPL3 GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> seqan-apps-2.2.0_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz [110arm64-quarterly-job-07] Installing pkg-1.10.1... [110arm64-quarterly-job-07] Extracting pkg-1.10.1: .......... done ===> seqan-apps-2.2.0_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of seqan-apps-2.2.0_3 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE LGPL3 GPLv3 accepted by the user ===> Fetching all distfiles required by seqan-apps-2.2.0_3 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD3CLAUSE LGPL3 GPLv3 accepted by the user ===> Fetching all distfiles required by seqan-apps-2.2.0_3 for building => SHA256 Checksum OK for seqan-seqan-seqan-v2.2.0_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSD3CLAUSE LGPL3 GPLv3 accepted by the user ===> Fetching all distfiles required by seqan-apps-2.2.0_3 for building ===> Extracting for seqan-apps-2.2.0_3 => SHA256 Checksum OK for seqan-seqan-seqan-v2.2.0_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for seqan-apps-2.2.0_3 =========================================================================== =======================<phase: build-depends >============================ ===> seqan-apps-2.2.0_3 depends on package: boost-libs>0 - not found ===> Installing existing package /packages/All/boost-libs-1.63.0_1.txz [110arm64-quarterly-job-07] Installing boost-libs-1.63.0_1... [110arm64-quarterly-job-07] `-- Installing icu-58.2_2,1... [110arm64-quarterly-job-07] `-- Extracting icu-58.2_2,1: .......... done [110arm64-quarterly-job-07] Extracting boost-libs-1.63.0_1: .......... done Message from boost-libs-1.63.0_1: You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. ===> seqan-apps-2.2.0_3 depends on package: boost-libs>0 - found ===> Returning to build of seqan-apps-2.2.0_3 ===> seqan-apps-2.2.0_3 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.7.2.txz [110arm64-quarterly-job-07] Installing cmake-3.7.2... [110arm64-quarterly-job-07] `-- Installing cmake-modules-3.7.2... [110arm64-quarterly-job-07] `-- Extracting cmake-modules-3.7.2: .......... done [110arm64-quarterly-job-07] `-- Installing curl-7.54.1... [110arm64-quarterly-job-07] | `-- Installing ca_root_nss-3.31... <snip> cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0 /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/razers /wrkdirs/usr/ports/biology/seqan-apps/work/.build /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/razers /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake Scanning dependencies of target razers /usr/bin/make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/build [ 69%] Building CXX object apps/razers/CMakeFiles/razers.dir/razers.cpp.o cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/razers && /usr/local/bin/g++5 -DSEQAN_APP_VERSION=\"1.5.4\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE -I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers.dir/razers.cpp.o -c /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/razers/razers.cpp In file included from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_allocator.h:47:0, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic.h:74, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/arg_parse.h:44, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/razers/razers.cpp:49: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning is a GCC extension #warning "No supported platform for SIMD vectorization!" ^ /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning "No supported platform for SIMD vectorization!" [-Wcpp] [ 70%] Building CXX object apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/razers && /usr/local/bin/g++5 -DSEQAN_APP_VERSION=\"1.5.4\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE -I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers.dir/param_tabs.cpp.o -c /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/razers/param_tabs.cpp In file included from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_allocator.h:47:0, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic.h:74, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/sequence.h:74, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/razers/param_tabs.h:30, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/razers/param_tabs.cpp:24: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning is a GCC extension #warning "No supported platform for SIMD vectorization!" ^ /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning "No supported platform for SIMD vectorization!" [-Wcpp] [ 70%] Linking CXX executable ../../bin/razers cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/razers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/razers.dir/link.txt --verbose=1 /usr/local/bin/g++5 -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 CMakeFiles/razers.dir/razers.cpp.o CMakeFiles/razers.dir/param_tabs.cpp.o -o ../../bin/razers -lpthread -lexecinfo -lelf [ 70%] Built target razers /usr/bin/make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0 /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/razers3 /wrkdirs/usr/ports/biology/seqan-apps/work/.build /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/razers3 /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake Scanning dependencies of target razers3_simulate_reads /usr/bin/make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build [ 70%] Building CXX object apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/razers3 && /usr/local/bin/g++5 -DSEQAN_APP_VERSION=\"3.5.4\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE -I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -c /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/razers3/simulate_reads.cpp In file included from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_allocator.h:47:0, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic.h:74, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/arg_parse.h:44, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/razers3/simulate_reads.cpp:6: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning is a GCC extension #warning "No supported platform for SIMD vectorization!" ^ /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning "No supported platform for SIMD vectorization!" [-Wcpp] [ 71%] Linking CXX executable ../../bin/razers3_simulate_reads cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/razers3 && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1 /usr/local/bin/g++5 -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -o ../../bin/razers3_simulate_reads -lpthread -lexecinfo -lelf -lz -lbz2 [ 71%] Built target razers3_simulate_reads /usr/bin/make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/depend cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0 /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/razers3 /wrkdirs/usr/ports/biology/seqan-apps/work/.build /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/razers3 /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake Scanning dependencies of target razers3 /usr/bin/make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/build [ 72%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/razers3 && /usr/local/bin/g++5 -DSEQAN_APP_VERSION=\"3.5.4\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE -I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers3.dir/razers.cpp.o -c /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/razers3/razers.cpp In file included from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_allocator.h:47:0, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic.h:74, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/razers3/razers.cpp:60: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning is a GCC extension #warning "No supported platform for SIMD vectorization!" ^ /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning "No supported platform for SIMD vectorization!" [-Wcpp] [ 73%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/razers3 && /usr/local/bin/g++5 -DSEQAN_APP_VERSION=\"3.5.4\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE -I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/razers3/param_tabs.cpp In file included from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_allocator.h:47:0, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic.h:74, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/sequence.h:74, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/razers3/param_tabs.h:30, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/razers3/param_tabs.cpp:24: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning is a GCC extension #warning "No supported platform for SIMD vectorization!" ^ /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning "No supported platform for SIMD vectorization!" [-Wcpp] [ 73%] Linking CXX executable ../../bin/razers3 cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/razers3 && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/razers3.dir/link.txt --verbose=1 /usr/local/bin/g++5 -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 CMakeFiles/razers3.dir/razers.cpp.o CMakeFiles/razers3.dir/param_tabs.cpp.o -o ../../bin/razers3 -lpthread -lexecinfo -lelf -lz -lbz2 [ 73%] Built target razers3 /usr/bin/make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0 /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/razers3 /wrkdirs/usr/ports/biology/seqan-apps/work/.build /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/razers3 /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake Scanning dependencies of target razers3_quality2prob /usr/bin/make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/build [ 74%] Building CXX object apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/razers3 && /usr/local/bin/g++5 -DSEQAN_APP_VERSION=\"3.5.4\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE -I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/razers3/quality2prob.cpp In file included from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_allocator.h:47:0, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic.h:74, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/arg_parse.h:44, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/razers3/quality2prob.cpp:5: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning is a GCC extension #warning "No supported platform for SIMD vectorization!" ^ /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning "No supported platform for SIMD vectorization!" [-Wcpp] [ 75%] Linking CXX executable ../../bin/razers3_quality2prob cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/razers3 && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1 /usr/local/bin/g++5 -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -o ../../bin/razers3_quality2prob -lpthread -lexecinfo -lelf -lz -lbz2 [ 75%] Built target razers3_quality2prob /usr/bin/make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/depend cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0 /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/rep_sep /wrkdirs/usr/ports/biology/seqan-apps/work/.build /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/rep_sep /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake Scanning dependencies of target rep_sep /usr/bin/make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/build [ 76%] Building CXX object apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/rep_sep && /usr/local/bin/g++5 -DSEQAN_APP_VERSION=\"0.1.7\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE -I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/rep_sep.dir/rep_sep.cpp.o -c /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/rep_sep/rep_sep.cpp In file included from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_allocator.h:47:0, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic.h:74, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/arg_parse.h:44, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/rep_sep/rep_sep.cpp:27: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning is a GCC extension #warning "No supported platform for SIMD vectorization!" ^ /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning "No supported platform for SIMD vectorization!" [-Wcpp] [ 77%] Linking CXX executable ../../bin/rep_sep cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/rep_sep && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1 /usr/local/bin/g++5 -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 CMakeFiles/rep_sep.dir/rep_sep.cpp.o -o ../../bin/rep_sep -lpthread -lexecinfo -lelf [ 77%] Built target rep_sep /usr/bin/make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/depend cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0 /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/sak /wrkdirs/usr/ports/biology/seqan-apps/work/.build /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/sak /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake Scanning dependencies of target sak /usr/bin/make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/build [ 77%] Building CXX object apps/sak/CMakeFiles/sak.dir/sak.cpp.o cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/sak && /usr/local/bin/g++5 -DSEQAN_APP_VERSION=\"0.4.4\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE -I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/sak.dir/sak.cpp.o -c /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/sak/sak.cpp In file included from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_allocator.h:47:0, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic.h:74, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/arg_parse.h:44, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/sak/sak.cpp:42: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning is a GCC extension #warning "No supported platform for SIMD vectorization!" ^ /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning "No supported platform for SIMD vectorization!" [-Wcpp] [ 78%] Linking CXX executable ../../bin/sak cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/sak && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1 /usr/local/bin/g++5 -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 CMakeFiles/sak.dir/sak.cpp.o -o ../../bin/sak -lpthread -lexecinfo -lelf [ 78%] Built target sak /usr/bin/make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0 /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/sam2matrix /wrkdirs/usr/ports/biology/seqan-apps/work/.build /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/sam2matrix /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake Scanning dependencies of target sam2matrix /usr/bin/make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/build [ 79%] Building CXX object apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/sam2matrix && /usr/local/bin/g++5 -DSEQAN_APP_VERSION=\"0.3.4\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE -I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/sam2matrix/sam2matrix.cpp In file included from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_allocator.h:47:0, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic.h:74, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/sam2matrix/sam2matrix.cpp:41: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning is a GCC extension #warning "No supported platform for SIMD vectorization!" ^ /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning "No supported platform for SIMD vectorization!" [-Wcpp] [ 80%] Linking CXX executable ../../bin/sam2matrix cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/sam2matrix && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1 /usr/local/bin/g++5 -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o ../../bin/sam2matrix -lpthread -lexecinfo -lelf [ 80%] Built target sam2matrix /usr/bin/make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/depend cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0 /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/samcat /wrkdirs/usr/ports/biology/seqan-apps/work/.build /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/samcat /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake Scanning dependencies of target samcat /usr/bin/make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/build [ 80%] Building CXX object apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/samcat && /usr/local/bin/g++5 -DSEQAN_APP_VERSION=\"0.3.4\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE -I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/samcat.dir/samcat.cpp.o -c /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/samcat/samcat.cpp In file included from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_allocator.h:47:0, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic.h:74, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/samcat/samcat.cpp:35: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning is a GCC extension #warning "No supported platform for SIMD vectorization!" ^ /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning "No supported platform for SIMD vectorization!" [-Wcpp] [ 81%] Linking CXX executable ../../bin/samcat cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/samcat && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1 /usr/local/bin/g++5 -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 CMakeFiles/samcat.dir/samcat.cpp.o -o ../../bin/samcat -lpthread -lexecinfo -lelf -lz [ 81%] Built target samcat /usr/bin/make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/depend cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0 /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/searchjoin /wrkdirs/usr/ports/biology/seqan-apps/work/.build /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/searchjoin /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/searchjoin/CMakeFiles/s4_join.dir/DependInfo.cmake Scanning dependencies of target s4_join /usr/bin/make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/build [ 81%] Building CXX object apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/searchjoin && /usr/local/bin/g++5 -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.4\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE -I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -std=c++14 -W -Wall -pedantic -fstrict-aliasing -Wstrict-aliasing -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -o CMakeFiles/s4_join.dir/join.cpp.o -c /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/searchjoin/join.cpp In file included from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_allocator.h:47:0, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic.h:74, from /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/apps/searchjoin/join.cpp:59: /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning is a GCC extension #warning "No supported platform for SIMD vectorization!" ^ /wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.2.0/include/seqan/basic/basic_simd_vector.h:53:3: warning: #warning "No supported platform for SIMD vectorization!" [-Wcpp] {standard input}: Assembler messages: {standard input}:32261: Error: unknown mnemonic `rep' -- `rep' {standard input}:32329: Error: unknown mnemonic `rep' -- `rep' {standard input}:32434: Error: unknown mnemonic `rep' -- `rep' {standard input}:32502: Error: unknown mnemonic `rep' -- `rep' {standard input}:32636: Error: unknown mnemonic `rep' -- `rep' {standard input}:32687: Error: unknown mnemonic `rep' -- `rep' {standard input}:32864: Error: unknown mnemonic `rep' -- `rep' {standard input}:32915: Error: unknown mnemonic `rep' -- `rep' *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/biology/seqan-apps/work/.build *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/seqan-apps/work/.build *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/seqan-apps/work/.build *** Error code 1 Stop. make: stopped in /usr/ports/biology/seqan-apps
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