From owner-svn-ports-all@freebsd.org Tue Mar 31 09:10:46 2020 Return-Path: Delivered-To: svn-ports-all@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 1AA0427D20E; Tue, 31 Mar 2020 09:10:46 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 48s3TJ5LXQz4W04; Tue, 31 Mar 2020 09:10:44 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 8D75F4AA3; Tue, 31 Mar 2020 06:42:23 +0000 (UTC) (envelope-from yuri@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id 02V6gN5g060704; Tue, 31 Mar 2020 06:42:23 GMT (envelope-from yuri@FreeBSD.org) Received: (from yuri@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id 02V6gN8U060702; Tue, 31 Mar 2020 06:42:23 GMT (envelope-from yuri@FreeBSD.org) Message-Id: <202003310642.02V6gN8U060702@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: yuri set sender to yuri@FreeBSD.org using -f From: Yuri Victorovich Date: Tue, 31 Mar 2020 06:42:23 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r529953 - in head/biology/cufflinks: . files X-SVN-Group: ports-head X-SVN-Commit-Author: yuri X-SVN-Commit-Paths: in head/biology/cufflinks: . files X-SVN-Commit-Revision: 529953 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 31 Mar 2020 09:10:46 -0000 Author: yuri Date: Tue Mar 31 06:42:22 2020 New Revision: 529953 URL: https://svnweb.freebsd.org/changeset/ports/529953 Log: biology/cufflinks: Update 2.2.1-83 -> 2.2.1-89 Add the pull request that fixes the boost::thread build failures. Deleted: head/biology/cufflinks/files/patch-src_biascorrection.h Modified: head/biology/cufflinks/Makefile head/biology/cufflinks/distinfo Modified: head/biology/cufflinks/Makefile ============================================================================== --- head/biology/cufflinks/Makefile Tue Mar 31 06:35:49 2020 (r529952) +++ head/biology/cufflinks/Makefile Tue Mar 31 06:42:22 2020 (r529953) @@ -2,10 +2,12 @@ PORTNAME= cufflinks DISTVERSIONPREFIX= v -DISTVERSION= 2.2.1-83 -DISTVERSIONSUFFIX= -gb4fa050 -PORTREVISION= 2 +DISTVERSION= 2.2.1-89 +DISTVERSIONSUFFIX= -gdc3b0cb CATEGORIES= biology + +PATCH_SITES= https://github.com/${GH_ACCOUNT}/${PORTNAME}/commit/ +PATCHFILES+= ea4671149f3054c773d99cea521db75bf7b0658f.patch:-p1 # https://github.com/cole-trapnell-lab/cufflinks/pull/127 MAINTAINER= yuri@FreeBSD.org COMMENT= Cufflinks assembles transcripts, estimates their abundance, etc Modified: head/biology/cufflinks/distinfo ============================================================================== --- head/biology/cufflinks/distinfo Tue Mar 31 06:35:49 2020 (r529952) +++ head/biology/cufflinks/distinfo Tue Mar 31 06:42:22 2020 (r529953) @@ -1,3 +1,5 @@ -TIMESTAMP = 1558818522 -SHA256 (cole-trapnell-lab-cufflinks-v2.2.1-83-gb4fa050_GH0.tar.gz) = 0b26b02c080115d4262d466503bdc43db5ff5583d8122e77355782dc7cbe0522 -SIZE (cole-trapnell-lab-cufflinks-v2.2.1-83-gb4fa050_GH0.tar.gz) = 8804967 +TIMESTAMP = 1585636520 +SHA256 (cole-trapnell-lab-cufflinks-v2.2.1-89-gdc3b0cb_GH0.tar.gz) = 3947a7266b4f58a92b3944b8e205c8875a7c0ce9ea19b394ea82ff77b91999be +SIZE (cole-trapnell-lab-cufflinks-v2.2.1-89-gdc3b0cb_GH0.tar.gz) = 8807044 +SHA256 (ea4671149f3054c773d99cea521db75bf7b0658f.patch) = d64446bab1b683dbdb51b33992694bbbc6511aa4eacd2b95812da75e090dff47 +SIZE (ea4671149f3054c773d99cea521db75bf7b0658f.patch) = 3779