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Date:      Sat, 11 Apr 2009 08:01:10 -0700 (PDT)
From:      QAT@FreeBSD.org
To:        thierry@FreeBSD.org
Cc:        maho@FreeBSD.org, cvs-ports@FreeBSD.org, cvs-all@FreeBSD.org, ports-committers@FreeBSD.org
Subject:   Re: cvs commit: ports/science/abinit Makefile distinfo pkg-plist ports/science/abinit/files patch-bindings_parser_ab_dtset_c.c patch-config+m4+init.m4 patch-config_scripts_make-macros-autotools
Message-ID:  <20090411150110.E01EF8FC53@release.ixsystems.com>
In-Reply-To: <200904101522.n3AFMrpB047186@repoman.freebsd.org>
References:  <200904101522.n3AFMrpB047186@repoman.freebsd.org>

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The Restless Daemon identified a configure error while trying to build:
 abinit-5.7.3 maintained by maho@FreeBSD.org
 Makefile ident: $FreeBSD: ports/science/abinit/Makefile,v 1.16 2009/04/10 15:22:52 thierry Exp $

Excerpt from http://QAT.TecNik93.com/logs/7-STABLE-FPT-NPD/abinit-5.7.3.log :

gfortran43 -O2 -g  -ffree-line-length-none -fPIC   -o abinetcdf abinetcdf-abinetcdf.o  ../../src/defs/libdefs.a -L/usr/local/lib -lnetcdff -lnetcdf  
gfortran43 -DHAVE_CONFIG_H -I. -I../.. -I../../src/14iowfdenpot -I../../src/14iowfdenpot -I../../src/01manage_mpi -I../../src/01manage_mpi -I../../src/17ddb -I../../src/17ddb -I../../src/15gw -I../../src/15gw -I../../src/13papi_counters -I../../src/13papi_counters -I../../src/defs -I../../src/defs -I../../src/13iovars -I../../src/13iovars -I../../src/19cut3d -I../../src/19cut3d -I../../src/13xml -I../../src/13xml -I../../src/15wfs -I../../src/15wfs -I../../src/02toolbox -I../../src/02toolbox -I../../src/lib00macroav -I../../src/lib00macroav -I../../src/11util -I../../src/11util -I../../src/17lwf -I../../src/17lwf -I../../src/13ionetcdf -I../../src/13ionetcdf -I../../src/15common -I../../src/15common -I../../src/12geometry -I../../src/12geometry -I../../src/12parser -I../../src/12parser -I../../src/13recipspace -I../../src/13recipspace -I../../src/16response -I../../src/16response -I../../src/21drive -I../../src/21drive -I../../src/14bader -I../../src/14bader -I../../src/12fft
 s -I../../src/12ffts -I../../src/13io_mpi -I../../src/13io_mpi -I../../src/14iowfdenpot -I../../src/14iowfdenpot -I../../src/13ionetcdf -I../../src/13ionetcdf -I../../src/13io_mpi -I../../src/13io_mpi -I../../src/12geometry -I../../src/12geometry -I../../src/11util -I../../src/11util -I../../src/lib03numeric -I../../src/lib03numeric -I../../src/02toolbox -I../../src/02toolbox -I../../src/01manage_mpi -I../../src/01manage_mpi -I../../src/lib01hidempi -I../../src/lib01hidempi -I../../src/lib00macroav -I../../src/lib00macroav -I../../src/00basis -I../../src/00basis -I../../src/interfaces -I../../src/interfaces -I../../src/defs -I../../src/defs -I/usr/local/include  -O2 -g  -ffree-line-length-none -fPIC -c -o macroave-macroave.o `test -f 'macroave.F90' || echo './'`macroave.F90
gfortran43 -O2 -g  -ffree-line-length-none -fPIC   -o macroave macroave-macroave.o  ../../src/14iowfdenpot/lib14iowfdenpot.a ../../src/13ionetcdf/lib13ionetcdf.a ../../src/13io_mpi/lib13io_mpis.a ../../src/12geometry/lib12geometry.a ../../src/11util/lib11util.a ../../src/lib03numeric/liblib03numeric.a ../../src/02toolbox/lib02toolbox.a ../../src/01manage_mpi/lib01manage_mpis.a ../../src/lib01hidempi/liblib01hidempis.a ../../src/lib00macroav/liblib00macroav.a ../../src/00basis/lib00basis.a ../../src/interfaces/libinterfaces.a ../../src/defs/libdefs.a  -L/work/a/ports/science/abinit/work/abinit-5.7.3/prereqs/linalg -llapack -lblas -L/usr/local/lib -lnetcdff -lnetcdf  
gmake[3]: Leaving directory `/work/a/ports/science/abinit/work/abinit-5.7.3/src/main'
Making all in libs
gmake[3]: Entering directory `/work/a/ports/science/abinit/work/abinit-5.7.3/src/libs'
rm -f libabibase.a
ar rc libabibase.a  ../defs/defs_aimfields.o ../defs/defs_aimprom.o ../defs/defs_basis.o ../defs/defs_berry.o ../defs/defs_datatypes.o ../defs/defs_dyson.o ../defs/defs_elphon.o ../defs/defs_fftdata.o ../defs/defs_interfaces.o ../defs/defs_parameters.o ../defs/defs_scalapack.o ../defs/defs_suscep.o ../defs/defs_time.o ../defs/defs_wannier90.o ../defs/defs_wvltypes.o ../defs/defs_xc.o ../defs/defs_xderive.o ../defs/defs_xfuncmpi.o ../interfaces/interfaces_bigdft.o ../interfaces/interfaces_etsf_io.o ../interfaces/interfaces_etsf_xc.o ../interfaces/interfaces_fox.o ../interfaces/interfaces_linalg.o ../interfaces/interfaces_netcdf.o ../interfaces/interfaces_plugins.o ../interfaces/interfaces_prereqs.o ../interfaces/interfaces_wannier90.o ../interfaces/interfaces_xmlf90.o ../01manage_mpi/clnmpi_band.o ../01manage_mpi/clnmpi_fft.o ../01manage_mpi/clnmpi_gs.o ../01manage_mpi/distrb2.o ../01manage_mpi/herald.o ../01manage_mpi/initmpi_band.o ../01manage_mpi/initmpi_grid.o ../01manage_
 mpi/initmpi_fft.o ../01manage_mpi/initmpi_gs.o ../01manage_mpi/initmpi_respfn.o ../01manage_mpi/initmpi_seq.o ../01manage_mpi/leave_new.o ../01manage_mpi/leave_test.o ../01manage_mpi/pre_scatter.o ../01manage_mpi/scalapack.o ../01manage_mpi/split_work.o ../01manage_mpi/split_work2.o ../01manage_mpi/timab.o ../01manage_mpi/time_accu.o ../01manage_mpi/timein.o ../01manage_mpi/wrtout.o ../02toolbox/int2char.o ../02toolbox/int2char4.o ../02toolbox/m_copy.o ../02toolbox/m_errors.o ../02toolbox/m_fstrings.o ../02toolbox/m_geometry.o ../02toolbox/m_io_tools.o ../02toolbox/m_jolly_pointers.o ../lib03numeric/ass_leg_pol.o ../lib03numeric/coeffs_gausslegint.o ../lib03numeric/dzgedi.o ../lib03numeric/dzgefa.o ../lib03numeric/gamma_function.o ../lib03numeric/interp.o ../lib03numeric/intrpl.o ../lib03numeric/j0y0.o ../lib03numeric/j1y1.o ../lib03numeric/jacobi.o ../lib03numeric/k0.o ../lib03numeric/k1.o ../lib03numeric/ludcmp.o ../lib03numeric/m_numeric_tools.o ../lib03numeric/polyn_coef
 f.o ../lib03numeric/smooth.o ../lib03numeric/sort_int.o ../lib03numeric/sort_dp.o ../lib03numeric/splfit.o ../lib03numeric/spline.o ../lib03numeric/splint.o ../lib03numeric/uniformrandom.o ../lib03numeric/zgedi.o ../lib03numeric/zgefa.o ../11util/acrossb.o ../11util/appdig.o ../11util/atmdata.o ../11util/atmlength.o ../11util/besjm.o ../11util/calc_psden.o ../11util/calc_psden_log.o ../11util/calc_vhtnzc.o ../11util/canon9.o ../11util/chknm8.o ../11util/clsopn.o ../11util/compmesh.o ../11util/copymesh.o ../11util/ctrap.o ../11util/ctrap_gen.o ../11util/deducer0.o ../11util/derf.o ../11util/derfc.o ../11util/dtsetcopy.o ../11util/dtsetfree.o ../11util/energies_init.o ../11util/factorial.o ../11util/hermit.o ../11util/ifromr.o ../11util/inupper.o ../11util/interpol3d.o ../11util/isfile.o ../11util/jbessel.o ../11util/lxyz.o ../11util/m_special_funcs.o ../11util/matcginv.o ../11util/mati3inv.o ../11util/matrginv.o ../11util/matr3eigval.o ../11util/matr3inv.o ../11util/memerr.o 
 ../11util/mkfilename.o ../11util/mkherm.o ../11util/mknormpath.o ../11util/mvrecord.o ../11util/nderiv.o ../11util/nderiv_gen.o ../11util/normev.o ../11util/overlap.o ../11util/pawfgrtab_utils.o ../11util/pclock.o ../11util/orthonormalize.o ../11util/pl_deriv.o ../11util/plm_coeff.o ../11util/plm_dphi.o ../11util/plm_dtheta.o ../11util/plm_d2theta.o ../11util/print_ij.o ../11util/print_ngfft.o ../11util/poisson.o ../11util/prmat.o ../11util/ratint.o ../11util/rhoij_utils.o ../11util/rotmat.o ../11util/simp_gen.o ../11util/slxyzs.o ../11util/status.o ../11util/wvl_utils.o ../11util/ylm_cmplx.o ../11util/ys.o ../11util/zorthonormalize.o ../12parser/inarray.o ../12parser/incomprs.o ../12parser/inread.o ../12parser/inreplsp.o ../12parser/instrng.o ../12parser/intagm.o ../12geometry/bldgrp.o ../12geometry/bldgrpaf.o ../12geometry/bonds_lgth_angles.o ../12geometry/chkdilatmx.o ../12geometry/chkgrp.o ../12geometry/chkorthsy.o ../12geometry/chkprimit.o ../12geometry/gensymshub.o ../
 12geometry/gensymshub4.o ../12geometry/gensymspgr.o ../12geometry/getptgroupma.o ../12geometry/getspinrot.o ../12geometry/gridgcart.o ../12geometry/holocell.o ../12geometry/metric.o ../12geometry/mkrdim.o ../12geometry/operat.o ../12geometry/prtspgroup.o ../12geometry/ptgmadata.o ../12geometry/remove_inversion.o ../12geometry/smallprim.o ../12geometry/spgdata.o ../12geometry/strconv.o ../12geometry/strainsym.o ../12geometry/stresssym.o ../12geometry/sym2cart.o ../12geometry/symanal.o ../12geometry/symatm.o ../12geometry/symaxes.o ../12geometry/symbrav.o ../12geometry/symchk.o ../12geometry/symdet.o ../12geometry/symfind.o ../12geometry/symlist_bcc.o ../12geometry/symlist_fcc.o ../12geometry/symlist_others.o ../12geometry/symlist_prim.o ../12geometry/symmultsg.o ../12geometry/symplanes.o ../12geometry/symredcart.o ../12geometry/symrelrot.o ../12geometry/symsgcube.o ../12geometry/symsghexa.o ../12geometry/symsgmono.o ../12geometry/symsgortho.o ../12geometry/symsgtetra.o ../12g
 eometry/symspgr.o ../12geometry/symzat.o ../12geometry/wvl_setboxgeometry.o ../12geometry/xredxcart.o ../13xml/append_cml.o ../13xml/append_cml2.o ../13xml/findmarkup.o ../13xml/getattribute.o ../13xml/importcml.o ../13xml/prt_cml.o ../13xml/prt_cml2.o ../13recipspace/bound.o ../13recipspace/getcut.o ../13recipspace/getkgrid.o ../13recipspace/getkpgnorm.o ../13recipspace/getmpw.o ../13recipspace/getng.o ../13recipspace/getph.o ../13recipspace/getwtk.o ../13recipspace/get_irredg.o ../13recipspace/get_full_gsphere.o ../13recipspace/get_full_kgrid.o ../13recipspace/get_tetra.o ../13recipspace/initylmg.o ../13recipspace/irrzg.o ../13recipspace/kpgio.o ../13recipspace/kpgsph.o ../13recipspace/laplacian.o ../13recipspace/merge_kgirr.o ../13recipspace/mkkin.o ../13recipspace/pmat2cart.o ../13recipspace/setshells.o ../13recipspace/setsym.o ../13recipspace/smpbz.o ../13recipspace/symkchk.o ../13recipspace/symkpt.o ../13recipspace/symg.o ../13recipspace/symq3.o ../13recipspace/testkgr
 id.o ../13iovars/chkdpr.o ../13iovars/chkinp.o ../13iovars/chkint.o ../13iovars/chkneu.o ../13iovars/chkvars.o ../13iovars/dsksta.o ../13iovars/getdim_nloc.o ../13iovars/indefo.o ../13iovars/ingeo.o ../13iovars/ingeobld.o ../13iovars/inkpts.o ../13iovars/invacuum.o ../13iovars/invars0.o ../13iovars/invars1.o ../13iovars/invars1m.o ../13iovars/invars2.o ../13iovars/invars2m.o ../13iovars/memana.o ../13iovars/memkss.o ../13iovars/memorf.o ../13iovars/memory.o ../13iovars/outqmc.o ../13iovars/outvars.o ../13iovars/outvar1.o ../13iovars/out_acknowl.o ../13iovars/out_geometry_xml.o ../13iovars/out_resultsgs_xml.o ../13iovars/parsefile.o ../13iovars/prtocc.o ../13iovars/prttagm.o ../13iovars/wvl_memory.o
ranlib libabibase.a
gmake[3]: Leaving directory `/work/a/ports/science/abinit/work/abinit-5.7.3/src/libs'
gmake[3]: Entering directory `/work/a/ports/science/abinit/work/abinit-5.7.3/src'
gmake[3]: Nothing to be done for `all-am'.
gmake[3]: Leaving directory `/work/a/ports/science/abinit/work/abinit-5.7.3/src'
gmake[2]: Leaving directory `/work/a/ports/science/abinit/work/abinit-5.7.3/src'
Making all in bindings
gmake[2]: Entering directory `/work/a/ports/science/abinit/work/abinit-5.7.3/bindings'
Making all in parser
gmake[3]: Entering directory `/work/a/ports/science/abinit/work/abinit-5.7.3/bindings/parser'
gmake -f ../../bindings/parser/parser.mk
gmake[4]: Entering directory `/work/a/ports/science/abinit/work/abinit-5.7.3/bindings/parser'
/work/a/ports/science/abinit/work/abinit-5.7.3/bindings/parser/parse_dtset.py
gcc43  -I/usr/local/include/python2.5 -I/usr/local/include/python2.5 -I. -O2 -fno-strict-aliasing -pipe -c /work/a/ports/science/abinit/work/abinit-5.7.3/bindings/parser/ab_dtset_py.c
gfortran43 -shared -o abinit.so ab_dtset_py.o -L/work/a/ports/science/abinit/work/abinit-5.7.3/src/libs -labibase
/usr/bin/ld: ab_dtset_py.o: relocation R_X86_64_32 can not be used when making a shared object; recompile with -fPIC
ab_dtset_py.o: could not read symbols: Bad value
collect2: ld returned 1 exit status
gmake[4]: *** [python] Error 1
gmake[4]: Leaving directory `/work/a/ports/science/abinit/work/abinit-5.7.3/bindings/parser'
gmake[3]: *** [bindings-ready] Error 2
gmake[3]: Leaving directory `/work/a/ports/science/abinit/work/abinit-5.7.3/bindings/parser'
gmake[2]: *** [all-recursive] Error 1
gmake[2]: Leaving directory `/work/a/ports/science/abinit/work/abinit-5.7.3/bindings'
gmake[1]: *** [all-recursive] Error 1
gmake[1]: Leaving directory `/work/a/ports/science/abinit/work/abinit-5.7.3'
gmake: *** [all] Error 2
*** Error code 1

Stop in /a/ports/science/abinit.
================================================================
build of /usr/ports/science/abinit ended at Sat Apr 11 15:01:08 UTC 2009

The tarballed WRKDIR can be found here:
http://QAT.TecNik93.com/wrkdirs/7-STABLE-FPT-NPD/abinit-5.7.3.tbz

PortsMon page for the port:
http://portsmon.freebsd.org/portoverview.py?category=science&portname=abinit

The build which triggered this BotMail was done under
tinderbox-devel-3.2_2; dsversion: 3.2 on RELENG_7 on amd64, kern.smp.cpus: 4
with tinderd_flags="-nullfs -plistcheck -onceonly" and ccache support, with the
"official" up-to-date Ports Tree, with the following vars set:
NOPORTDOCS=yes,  NOPORTEXAMPLES=yes, NOPORTDATA=yes, FORCE_PACKAGE=yes.

A description of the testing process can be found here:
http://T32.TecNik93.com/FreeBSD/QA-Tindy/


Thanks for your work on making FreeBSD better,

--
QAT - your friendly neighborhood Daemon,
preparing  a heck of an error trapping system:
 - "HMC and EOI?"
 - "Halt, Melt and Catch fire or Execute Operator Immediately."




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