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Date:      Thu, 2 Aug 2018 19:55:41 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - head-armv7-default][biology/cytoscape] Failed for cytoscape-3.6.1 in build
Message-ID:  <201808021955.w72JtftR025714@beefy16.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: yuri@FreeBSD.org
Ident:          $FreeBSD: head/biology/cytoscape/Makefile 473806 2018-07-03 08:42:54Z yuri $
Log URL:        http://beefy16.nyi.freebsd.org/data/head-armv7-default/p475964_s336959/logs/cytoscape-3.6.1.log
Build URL:      http://beefy16.nyi.freebsd.org/build.html?mastername=head-armv7-default&build=p475964_s336959
Log:

=>> Building biology/cytoscape
build started at Thu Aug  2 17:37:08 UTC 2018
port directory: /usr/ports/biology/cytoscape
package name: cytoscape-3.6.1
building for: FreeBSD head-armv7-default-job-19 12.0-CURRENT FreeBSD 12.0-CURRENT 1200076 arm
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: head/biology/cytoscape/Makefile 473806 2018-07-03 08:42:54Z yuri $
Poudriere version: 3.2.7-2-g1cf194be
Host OSVERSION: 1200069
Jail OSVERSION: 1200076
Job Id: 19




!!! Jail is newer than host. (Jail: 1200076, Host: 1200069) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
yuri@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cytoscape/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cytoscape/work  HOME=/wrkdirs/usr/ports/biology/cytoscape/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cytoscape/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh
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--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cytoscape/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cytoscape/work  HOME=/wrkdirs/usr/ports/biology/cytoscape/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cytoscape/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe  -fno-strict-aliasing"  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
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--End PLIST_SUB--

--SUB_LIST--
JAVASHAREDIR="/usr/local/share/java"  JAVAJARDIR="/usr/local/share/java/classes"  JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="1.7+" PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/cytoscape DOCSDIR=/usr/local/share/doc/cytoscape EXAMPLESDIR=/usr/local/share/examples/cytoscape  WWWDIR=/usr/local/www/cytoscape ETCDIR=/usr/local/etc/cytoscape
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MACHINE=arm
MACHINE_ARCH=armv7
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2

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LINT=	true
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#### /usr/ports/Mk/Scripts/ports_env.sh ####
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SED=/nxb-bin/usr/bin/sed
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--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
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locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
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=======================<phase: check-sanity   >============================
===>  License MIT accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_1.txz
[head-armv7-default-job-19] Installing pkg-1.10.5_1...
[head-armv7-default-job-19] Extracting pkg-1.10.5_1: .......... done
===>   cytoscape-3.6.1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of cytoscape-3.6.1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License MIT accepted by the user
<snip>
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ task-testing-impl ---
[INFO] Not copying test resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ task-testing-impl ---
[INFO] Not compiling test sources
[INFO] 
[INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ task-testing-impl ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ task-testing-impl ---
[INFO] 
[INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ task-testing-impl >>>
[INFO] 
[INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ task-testing-impl <<<
[INFO] 
[INFO] 
[INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ task-testing-impl ---
[INFO] Building jar: /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/task-testing-impl/target/task-testing-impl-3.6.1-sources.jar
[INFO] 
[INFO] --- maven-install-plugin:2.5.2:install (default-install) @ task-testing-impl ---
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/task-testing-impl/target/task-testing-impl-3.6.1.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/task-testing-impl/3.6.1/task-testing-impl-3.6.1.jar
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/task-testing-impl/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/task-testing-impl/3.6.1/task-testing-impl-3.6.1.pom
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/support/task-testing-impl/target/task-testing-impl-3.6.1-sources.jar to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/task-testing-impl/3.6.1/task-testing-impl-3.6.1-sources.jar
[INFO] 
[INFO] --- maven-bundle-plugin:3.0.0:install (default-install) @ task-testing-impl ---
[INFO] Installing org/cytoscape/task-testing-impl/3.6.1/task-testing-impl-3.6.1.jar
[INFO] Writing OBR metadata
[INFO] 
[INFO] -----------------< org.cytoscape.distribution:parent >------------------
[INFO] Building Cytoscape Desktop Application Distribution 3.6.1       [75/117]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] >>> maven-source-plugin:2.4:jar (attach-sources) > generate-sources @ parent >>>
[INFO] 
[INFO] <<< maven-source-plugin:2.4:jar (attach-sources) < generate-sources @ parent <<<
[INFO] 
[INFO] 
[INFO] --- maven-source-plugin:2.4:jar (attach-sources) @ parent ---
[INFO] 
[INFO] --- maven-install-plugin:2.4:install (default-install) @ parent ---
[INFO] Installing /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/pom.xml to /wrkdirs/usr/ports/biology/cytoscape/work/.m2/repository/org/cytoscape/distribution/parent/3.6.1/parent-3.6.1.pom
[INFO] 
[INFO] ---------------< org.cytoscape.distribution:third-party >---------------
[INFO] Building Cytoscape Third-Party Dependencies (third-party) 3.6.1 [76/117]
[INFO] -------------------------------[ bundle ]-------------------------------
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ third-party ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /wrkdirs/usr/ports/biology/cytoscape/work/cytoscape-3.6.1/gui-distribution/third-party/src/main/resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ third-party ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ third-party ---
[INFO] Not copying test resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ third-party ---
[INFO] Not compiling test sources
[INFO] 
[INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ third-party ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-bundle-plugin:3.0.0:bundle (default-bundle) @ third-party ---
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Basic Cytoscape POM Configuration .................. SUCCESS [ 13.987 s]
[INFO] Cytoscape API Parent Project POM ................... SUCCESS [02:02 min]
[INFO] Cytoscape Documentation Taglets .................... SUCCESS [01:00 min]
[INFO] Cytoscape Event API (event-api) .................... SUCCESS [02:11 min]
[INFO] Cytoscape Model API (model-api) .................... SUCCESS [01:46 min]
[INFO] Cytoscape Service API (service-api) ................ SUCCESS [01:27 min]
[INFO] Cytoscape View Model API (viewmodel-api) ........... SUCCESS [01:36 min]
[INFO] Cytoscape CI API (ci-api) .......................... SUCCESS [01:22 min]
[INFO] Cytoscape Work API (work-api) ...................... SUCCESS [01:46 min]
[INFO] Cytoscape Presentation API (presentation-api) ...... SUCCESS [02:00 min]
[INFO] Cytoscape Application API (application-api) ........ SUCCESS [01:26 min]
[INFO] Cytoscape Property API (property-api) .............. SUCCESS [01:23 min]
[INFO] Cytoscape VizMap API (vizmap-api) .................. SUCCESS [01:48 min]
[INFO] Cytoscape Session API (session-api) ................ SUCCESS [01:28 min]
[INFO] Cytoscape Filter API (filter-api) .................. SUCCESS [01:32 min]
[INFO] Cytoscape IO API (io-api) .......................... SUCCESS [01:39 min]
[INFO] Cytoscape Core Task API (core-task-api) ............ SUCCESS [01:50 min]
[INFO] Cytoscape Equations API (equations-api) ............ SUCCESS [01:35 min]
[INFO] Cytoscape Layout API (layout-api) .................. SUCCESS [01:56 min]
[INFO] Cytoscape Groups API (group-api) ................... SUCCESS [01:40 min]
[INFO] Cytoscape Groups API (jobs-api) .................... SUCCESS [01:33 min]
[INFO] Cytoscape Webservice API (webservice-api) .......... SUCCESS [01:32 min]
[INFO] Cytoscape Data Source API (datasource-api) ......... SUCCESS [01:35 min]
[INFO] Cytoscape Command Executor API (command-executor-api) SUCCESS [01:31 min]
[INFO] Cytoscape App API (app-api) ........................ FAILURE [05:41 min]
[INFO] Cytoscape Work Swing API (work-swing-api) .......... SUCCESS [01:35 min]
[INFO] Cytoscape Swing Application API (swing-application-api) SUCCESS [01:45 min]
[INFO] Cytoscape VizMap GUI API (vizmap-gui-api) .......... SUCCESS [01:35 min]
[INFO] Cytoscape Swing Utility API (swing-util-api) ....... SUCCESS [02:05 min]
[INFO] Cytoscape Webservice Swing API (webservice-swing-api) SUCCESS [01:27 min]
[INFO] Cytoscape Swing App API (swing-app-api) ............ SKIPPED
[INFO] Cytoscape Util API (util-api) ...................... SUCCESS [01:26 min]
[INFO] Cytoscape API (api-bundle) ......................... SKIPPED
[INFO] Cytoscape Implementation Parent Project POM ........ SUCCESS [01:31 min]
[INFO] Cytoscape Equations Impl (equations-impl) .......... SUCCESS [02:40 min]
[INFO] Cytoscape Model Impl Parent (model-impl-parent) .... SKIPPED
[INFO] Cytoscape Model Impl (model-impl) .................. SKIPPED
[INFO] Cytoscape Command Executor Impl (command-executor-impl) SKIPPED
[INFO] Cytoscape Ding Impl Parent (ding-impl) ............. SUCCESS [01:24 min]
[INFO] Cytoscape Ding View/Presentation Impl (ding-presentation-impl) SKIPPED
[INFO] Cytoscape View Model Impl Parent (viewmodel-impl-parent) SKIPPED
[INFO] Cytoscape View Model Impl (viewmodel-impl) ......... SKIPPED
[INFO] Cytoscape Groups Impl (group-impl) ................. SKIPPED
[INFO] Cytoscape Event Impl Parent (event-impl-parent) .... SUCCESS [01:24 min]
[INFO] Cytoscape Event Impl (event-impl) .................. SUCCESS [01:29 min]
[INFO] Cytoscape Filters Impl (filter-impl) ............... SKIPPED
[INFO] Cytoscape Filters 2 Impl (filter2-impl) ............ SKIPPED
[INFO] Cytoscape IO Impl Parent (io-impl-parent) .......... SKIPPED
[INFO] Cytoscape IO Impl (io-impl) ........................ SKIPPED
[INFO] Cytoscape Layout Impl (layout-impl) ................ SKIPPED
[INFO] Cytoscape Ding View/Presentation Impl Performance (ding-impl-performance-debug) SKIPPED
[INFO] Cytoscape Editor Impl (editor-impl) ................ SKIPPED
[INFO] Cytoscape Equation Functions Impl (equations-functions-impl) SUCCESS [01:31 min]
[INFO] Cytoscape GraphML Impl (graphml-impl) .............. SKIPPED
[INFO] Cytoscape IO Impl Performance (io-impl-performance)  SKIPPED
[INFO] Cytoscape Jobs Impl (jobs-impl) .................... SUCCESS [01:45 min]
[INFO] Cytoscape Layout Algorithms Impl (layout-cytoscape-impl) SUCCESS [04:14 min]
[INFO] Cytoscape JGraph Layout Impl (layout-jgraph-impl) .. SUCCESS [01:37 min]
[INFO] Cytoscape Prefuse Layout Impl (layout-prefuse-impl)  SUCCESS [01:47 min]
[INFO] Cytoscape Linkout Impl (linkout-impl) .............. SUCCESS [01:48 min]
[INFO] Cytoscape Log Swing Impl (log-swing-impl) .......... SUCCESS [01:47 min]
[INFO] Cytoscape Manual Layout Impl (manual-layout-impl) .. SUCCESS [02:18 min]
[INFO] Cytoscape Model Impl Performance Debug (model-impl-performance-debug) SKIPPED
[INFO] Cytoscape Model Impl Table Performance Debug (model-impl-table-performance-debug) SKIPPED
[INFO] Cytoscape App Impl (app-impl) ...................... SKIPPED
[INFO] Cytoscape Presentation Impl (presentation-impl) .... SUCCESS [01:29 min]
[INFO] Cytoscape Property Impl (property-impl) ............ SUCCESS [01:43 min]
[INFO] Cytoscape Search Impl (search-impl) ................ SUCCESS [01:41 min]
[INFO] Cytoscape Session Impl (session-impl) .............. SUCCESS [01:42 min]
[INFO] Cytoscape Swing Utility Impl (swing-util-impl) ..... SUCCESS [01:35 min]
[INFO] Cytoscape Swing Application Impl (swing-application-impl) SKIPPED
[INFO] Cytoscape Table Browser Impl (table-browser-impl) .. SKIPPED
[INFO] Cytoscape Table Import Impl (table-import-impl) .... SKIPPED
[INFO] Cytoscape VizMap GUI Core Impl (vizmap-gui-core-impl) SUCCESS [01:42 min]
[INFO] Cytoscape VizMap GUI Impl (vizmap-gui-impl) ........ SUCCESS [05:50 min]
[INFO] Cytoscape VizMap Impl Parent (vizmap-impl-parent) .. SKIPPED
[INFO] Cytoscape VizMap Impl (vizmap-impl) ................ SKIPPED
[INFO] Cytoscape Webservice Impl (webservice-impl) ........ SUCCESS [01:47 min]
[INFO] org.cytoscape.work-headless-impl ................... SUCCESS [01:32 min]
[INFO] org.cytoscape.work-impl ............................ SUCCESS [01:36 min]
[INFO] Cytoscape Work Swing Impl Parent (work-swing-impl-parent) SUCCESS [01:18 min]
[INFO] Cytoscape Work Swing Impl (work-swing-impl) ........ SUCCESS [02:52 min]
[INFO] Cytoscape Application Impl (application-impl) ...... SKIPPED
[INFO] Cytoscape Datasource Impl (datasource-impl) ........ SUCCESS [01:26 min]
[INFO] Cytoscape Support Parent Project POM ............... SUCCESS [  0.413 s]
[INFO] Cytoscape Launch Framework ......................... SUCCESS [  0.298 s]
[INFO] CommandLine Provider ............................... SUCCESS [ 58.724 s]
[INFO] Cytoscape GUI Command Line Parser Impl (gui-cmdline-parser-impl) SUCCESS [01:47 min]
[INFO] Cytoscape Edge Bundler Impl (edge-bundler-impl) .... SUCCESS [01:41 min]
[INFO] Cytoscape Scripting Impl (scripting-impl) .......... SKIPPED
[INFO] Cytoscape Core Task Impl (core-task-impl) .......... SKIPPED
[INFO] Cytoscape Headless Application Impl (headless-application-impl) SUCCESS [01:32 min]
[INFO] org.cytoscape.cy-commons-cli ....................... SUCCESS [01:25 min]
[INFO] Cytoscape Headless Command Line Parser Impl (headless-cmdline-parser-impl) SUCCESS [01:29 min]
[INFO] Cytoscape 3 App Archetypes Parent .................. SUCCESS [  8.696 s]
[INFO] Cytoscape 3 Archetype - Creates an App providing public API SUCCESS [ 13.052 s]
[INFO] Cytoscape 3 Archetype - Creates an App with a Task . SUCCESS [  1.214 s]
[INFO] Cytoscape 3 Archetype - Creates a CyAction (menu item) for desktop application SUCCESS [  1.336 s]
[INFO] Cytoscape 3 Archetype - Creates a Meta-App to install multiple related apps SUCCESS [  2.321 s]
[INFO] org.cytoscape.integration-test-support ............. SUCCESS [01:19 min]
[INFO] Launcher ........................................... FAILURE [ 39.620 s]
[INFO] StartLevel Assembly ................................ SUCCESS [  1.531 s]
[INFO] Tasks for Testing .................................. SUCCESS [01:26 min]
[INFO] Cytoscape Desktop Application Distribution ......... SUCCESS [  0.728 s]
[INFO] Cytoscape Third-Party Dependencies (third-party) ... FAILURE [15:46 min]
[INFO] SplashScreen Launcher .............................. SKIPPED
[INFO] Cytoscape Launcher ................................. SKIPPED
[INFO] Splash Updater ..................................... SKIPPED
[INFO] Cytoscape Command Line Provider Implementation ..... SKIPPED
[INFO] Cytoscape Diagnostics .............................. SKIPPED
[INFO] Cytoscape Branding ................................. SKIPPED
[INFO] Cytoscape Application Implementation Metadata ...... SKIPPED
[INFO] Cytoscape GUI-Distribution Integration Test (integration-test) SKIPPED
[INFO] Cytoscape Feature Repository ....................... SKIPPED
[INFO] Cytoscape Karaf Distribution ....................... SKIPPED
[INFO] Distribution ....................................... SKIPPED
[INFO] Cytoscape Project POM 3.6.1 ........................ SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 02:16 h
[INFO] Finished at: 2018-08-02T19:55:36Z
[INFO] ------------------------------------------------------------------------
[ERROR] Java heap space -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/OutOfMemoryError
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/cytoscape



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