Date: Thu, 14 Jun 2018 14:37:06 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-arm64-default][biology/vcflib] Failed for vcflib-1.0.0.r1.130 in build Message-ID: <201806141437.w5EEb6qt047956@thunderx1.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Last committer: jwb@FreeBSD.org Ident: $FreeBSD: head/biology/vcflib/Makefile 467553 2018-04-17 03:11:39Z jwb $ Log URL: http://thunderx1.nyi.freebsd.org/data/head-arm64-default/p471899_s334756/logs/vcflib-1.0.0.r1.130.log Build URL: http://thunderx1.nyi.freebsd.org/build.html?mastername=head-arm64-default&build=p471899_s334756 Log: =>> Building biology/vcflib build started at Thu Jun 14 14:34:38 UTC 2018 port directory: /usr/ports/biology/vcflib package name: vcflib-1.0.0.r1.130 building for: FreeBSD head-arm64-default-job-18 12.0-CURRENT FreeBSD 12.0-CURRENT 1200066 arm64 maintained by: jwb@FreeBSD.org Makefile ident: $FreeBSD: head/biology/vcflib/Makefile 467553 2018-04-17 03:11:39Z jwb $ Poudriere version: 3.2.7 Host OSVERSION: 1200060 Jail OSVERSION: 1200066 Job Id: 18 !!! Jail is newer than host. (Jail: 1200066, Host: 1200060) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1200066 UNAME_v=FreeBSD 12.0-CURRENT 1200066 UNAME_r=12.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.7 MASTERMNT=/usr/local/poudriere/data/.m/head-arm64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-arm64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-arm64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-arm64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/vcflib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/vcflib/work HOME=/wrkdirs/usr/ports/biology/vcflib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/vcflib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/vcflib/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/vcflib/work HOME=/wrkdirs/usr/ports/biology/vcflib/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/vcflib/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='\"1.0.0.r1.130\"'" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/vcflib" EXAMPLESDIR="share/examples/vcflib" DATADIR="share/vcflib" WWWDIR="www/vcflib" ETCDIR="etc/vcflib" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/vcflib DOCSDIR=/usr/local/share/doc/vcflib EXAMPLESDIR=/usr/local/share/examples/vcflib WWWDIR=/usr/local/www/vcflib ETCDIR=/usr/local/etc/vcflib --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: aarch64-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: aarch64-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 326565) (based on LLVM 6.0.0) Target: aarch64-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=aarch64 OPSYS=FreeBSD _OSRELEASE=12.0-CURRENT OSREL=12.0 OSVERSION=1200066 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License MIT accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> vcflib-1.0.0.r1.130 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz [head-arm64-default-job-18] Installing pkg-1.10.5_1... [head-arm64-default-job-18] Extracting pkg-1.10.5_1: .......... done ===> vcflib-1.0.0.r1.130 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of vcflib-1.0.0.r1.130 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License MIT accepted by the user ===> Fetching all distfiles required by vcflib-1.0.0.r1.130 for building =========================================================================== =======================<phase: checksum >============================ ===> License MIT accepted by the user ===> Fetching all distfiles required by vcflib-1.0.0.r1.130 for building => SHA256 Checksum OK for ekg-vcflib-v1.0.0-rc1-130-g7e3d806_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License MIT accepted by the user ===> Fetching all distfiles required by vcflib-1.0.0.r1.130 for building ===> Extracting for vcflib-1.0.0.r1.130 => SHA256 Checksum OK for ekg-vcflib-v1.0.0-rc1-130-g7e3d806_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for vcflib-1.0.0.r1.130 ===> Applying FreeBSD patches for vcflib-1.0.0.r1.130 =========================================================================== =======================<phase: build-depends >============================ ===> vcflib-1.0.0.r1.130 depends on executable: fastahack - not found ===> Installing existing package /packages/All/fastahack-g20160702.txz [head-arm64-default-job-18] Installing fastahack-g20160702... [head-arm64-default-job-18] Extracting fastahack-g20160702: .......... done ===> vcflib-1.0.0.r1.130 depends on executable: fastahack - found ===> Returning to build of vcflib-1.0.0.r1.130 ===> vcflib-1.0.0.r1.130 depends on executable: filevercmp - not found ===> Installing existing package /packages/All/filevercmp-g20151117.txz [head-arm64-default-job-18] Installing filevercmp-g20151117... [head-arm64-default-job-18] Extracting filevercmp-g20151117: ...... done ===> vcflib-1.0.0.r1.130 depends on executable: filevercmp - found ===> Returning to build of vcflib-1.0.0.r1.130 ===> vcflib-1.0.0.r1.130 depends on executable: fsom - not found <snip> If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> vcflib-1.0.0.r1.130 depends on shared library: libhts.so - found (/usr/local/lib/libhts.so) ===> Returning to build of vcflib-1.0.0.r1.130 ===> vcflib-1.0.0.r1.130 depends on shared library: libtabix.so - not found ===> Installing existing package /packages/All/tabixpp-1.0.0.10.txz [head-arm64-default-job-18] Installing tabixpp-1.0.0.10... [head-arm64-default-job-18] Extracting tabixpp-1.0.0.10: ........ done ===> vcflib-1.0.0.r1.130 depends on shared library: libtabix.so - found (/usr/local/lib/libtabix.so) ===> Returning to build of vcflib-1.0.0.r1.130 ===> vcflib-1.0.0.r1.130 depends on shared library: libsw.so - not found ===> Installing existing package /packages/All/smithwaterman-g20160702.txz [head-arm64-default-job-18] Installing smithwaterman-g20160702... [head-arm64-default-job-18] Extracting smithwaterman-g20160702: .......... done ===> vcflib-1.0.0.r1.130 depends on shared library: libsw.so - found (/usr/local/lib/libsw.so) ===> Returning to build of vcflib-1.0.0.r1.130 =========================================================================== =======================<phase: configure >============================ ===> Configuring for vcflib-1.0.0.r1.130 =========================================================================== =======================<phase: build >============================ ===> Building for vcflib-1.0.0.r1.130 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.0-rc1-130-g7e3d806' c++ -c -o src/Variant.o src/Variant.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11 src/Variant.cpp:174:1: warning: control may reach end of non-void function [-Wreturn-type] }; ^ src/Variant.cpp:502:5: warning: control may reach end of non-void function [-Wreturn-type] } ^ src/Variant.cpp:627:5: warning: control may reach end of non-void function [-Wreturn-type] } ^ src/Variant.cpp:661:5: warning: control may reach end of non-void function [-Wreturn-type] } ^ src/Variant.cpp:699:5: warning: control may reach end of non-void function [-Wreturn-type] } ^ 5 warnings generated. c++ -c -o src/rnglib.o src/rnglib.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11 c++ -c -o src/var.o src/var.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11 c++ -c -o src/pdflib.o src/pdflib.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11 c++ -c -o src/cdflib.o src/cdflib.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11 src/cdflib.cpp:2223:36: warning: '&&' within '||' [-Wlogical-op-parentheses] if(!(*s < 0.0e0 || *which != 3 && *s > *xn)) goto S160; ~~ ~~~~~~~~~~~~^~~~~~~~~~~ src/cdflib.cpp:2223:36: note: place parentheses around the '&&' expression to silence this warning if(!(*s < 0.0e0 || *which != 3 && *s > *xn)) goto S160; ^ ( ) src/cdflib.cpp:3909:20: warning: '&&' within '||' [-Wlogical-op-parentheses] if(!(qporq && cum > 1.5e0 || !qporq && ccum > 1.5e0)) goto S280; ~~~~~~^~~~~~~~~~~~~~ ~~ src/cdflib.cpp:3909:20: note: place parentheses around the '&&' expression to silence this warning if(!(qporq && cum > 1.5e0 || !qporq && ccum > 1.5e0)) goto S280; ^ ( ) src/cdflib.cpp:3909:45: warning: '&&' within '||' [-Wlogical-op-parentheses] if(!(qporq && cum > 1.5e0 || !qporq && ccum > 1.5e0)) goto S280; ~~ ~~~~~~~^~~~~~~~~~~~~~~ src/cdflib.cpp:3909:45: note: place parentheses around the '&&' expression to silence this warning if(!(qporq && cum > 1.5e0 || !qporq && ccum > 1.5e0)) goto S280; ^ ( ) src/cdflib.cpp:6924:17: warning: '&&' within '||' [-Wlogical-op-parentheses] qup = qincr && yy < 0.0e0 || !qincr && yy > 0.0e0; ~~~~~~^~~~~~~~~~~~~ ~~ src/cdflib.cpp:6924:17: note: place parentheses around the '&&' expression to silence this warning qup = qincr && yy < 0.0e0 || !qincr && yy > 0.0e0; ^ ( ) src/cdflib.cpp:6924:41: warning: '&&' within '||' [-Wlogical-op-parentheses] qup = qincr && yy < 0.0e0 || !qincr && yy > 0.0e0; ~~ ~~~~~~~^~~~~~~~~~~~~ src/cdflib.cpp:6924:41: note: place parentheses around the '&&' expression to silence this warning qup = qincr && yy < 0.0e0 || !qincr && yy > 0.0e0; ^ ( ) src/cdflib.cpp:6946:18: warning: '&&' within '||' [-Wlogical-op-parentheses] qbdd = qincr && yy >= 0.0e0 || !qincr && yy <= 0.0e0; ~~~~~~^~~~~~~~~~~~~~ ~~ src/cdflib.cpp:6946:18: note: place parentheses around the '&&' expression to silence this warning qbdd = qincr && yy >= 0.0e0 || !qincr && yy <= 0.0e0; ^ ( ) src/cdflib.cpp:6946:43: warning: '&&' within '||' [-Wlogical-op-parentheses] qbdd = qincr && yy >= 0.0e0 || !qincr && yy <= 0.0e0; ~~ ~~~~~~~^~~~~~~~~~~~~~ src/cdflib.cpp:6946:43: note: place parentheses around the '&&' expression to silence this warning qbdd = qincr && yy >= 0.0e0 || !qincr && yy <= 0.0e0; ^ ( ) src/cdflib.cpp:6985:18: warning: '&&' within '||' [-Wlogical-op-parentheses] qbdd = qincr && yy <= 0.0e0 || !qincr && yy >= 0.0e0; ~~~~~~^~~~~~~~~~~~~~ ~~ src/cdflib.cpp:6985:18: note: place parentheses around the '&&' expression to silence this warning qbdd = qincr && yy <= 0.0e0 || !qincr && yy >= 0.0e0; ^ ( ) src/cdflib.cpp:6985:43: warning: '&&' within '||' [-Wlogical-op-parentheses] qbdd = qincr && yy <= 0.0e0 || !qincr && yy >= 0.0e0; ~~ ~~~~~~~^~~~~~~~~~~~~~ src/cdflib.cpp:6985:43: note: place parentheses around the '&&' expression to silence this warning qbdd = qincr && yy <= 0.0e0 || !qincr && yy >= 0.0e0; ^ ( ) src/cdflib.cpp:7190:26: warning: '&&' within '||' [-Wlogical-op-parentheses] qrzero = fc >= 0.0e0 && fb <= 0.0e0 || fc < 0.0e0 && fb >= 0.0e0; ~~~~~~~~~~~~^~~~~~~~~~~~~~ ~~ src/cdflib.cpp:7190:26: note: place parentheses around the '&&' expression to silence this warning qrzero = fc >= 0.0e0 && fb <= 0.0e0 || fc < 0.0e0 && fb >= 0.0e0; ^ ( ) src/cdflib.cpp:7190:55: warning: '&&' within '||' [-Wlogical-op-parentheses] qrzero = fc >= 0.0e0 && fb <= 0.0e0 || fc < 0.0e0 && fb >= 0.0e0; ~~ ~~~~~~~~~~~^~~~~~~~~~~~~~ src/cdflib.cpp:7190:55: note: place parentheses around the '&&' expression to silence this warning qrzero = fc >= 0.0e0 && fb <= 0.0e0 || fc < 0.0e0 && fb >= 0.0e0; ^ ( ) 11 warnings generated. c++ -c -o src/split.o src/split.cpp -I/usr/local/include -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -O2 -pipe -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11 c++ -O2 -pipe -fno-strict-aliasing -I/usr/local/include/smithwaterman -I/usr/local/include/multichoose -I/usr/local/include/filevercmp -I/usr/local/include/fastahack -I/usr/local/include/intervaltree -DVERSION='"1.0.0.r1.130"' -O2 -pipe -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -fPIC --std=c++11 -c -o src/ssw.o src/ssw.cpp In file included from src/ssw.cpp:38: In file included from /usr/lib/clang/6.0.0/include/emmintrin.h:27: In file included from /usr/lib/clang/6.0.0/include/xmmintrin.h:27: /usr/lib/clang/6.0.0/include/mmintrin.h:47:5: error: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'? __builtin_ia32_emms(); ^ /usr/lib/clang/6.0.0/include/mmintrin.h:47:5: note: '__builtin_isless' declared here /usr/lib/clang/6.0.0/include/mmintrin.h:47:25: error: too few arguments to function call, expected 2, have 0 __builtin_ia32_emms(); ^ /usr/lib/clang/6.0.0/include/mmintrin.h:64:19: error: use of undeclared identifier '__builtin_ia32_vec_init_v2si' return (__m64)__builtin_ia32_vec_init_v2si(__i, 0); ^ /usr/lib/clang/6.0.0/include/mmintrin.h:81:12: error: use of undeclared identifier '__builtin_ia32_vec_ext_v2si' return __builtin_ia32_vec_ext_v2si((__v2si)__m, 0); ^ /usr/lib/clang/6.0.0/include/mmintrin.h:143:19: error: use of undeclared identifier '__builtin_ia32_packsswb' return (__m64)__builtin_ia32_packsswb((__v4hi)__m1, (__v4hi)__m2); ^ /usr/lib/clang/6.0.0/include/mmintrin.h:173:19: error: use of undeclared identifier '__builtin_ia32_packssdw' return (__m64)__builtin_ia32_packssdw((__v2si)__m1, (__v2si)__m2); ^ /usr/lib/clang/6.0.0/include/mmintrin.h:203:19: error: use of undeclared identifier '__builtin_ia32_packuswb' return (__m64)__builtin_ia32_packuswb((__v4hi)__m1, (__v4hi)__m2); ^ /usr/lib/clang/6.0.0/include/mmintrin.h:230:19: error: use of undeclared identifier '__builtin_ia32_punpckhbw' return (__m64)__builtin_ia32_punpckhbw((__v8qi)__m1, (__v8qi)__m2); ^ /usr/lib/clang/6.0.0/include/mmintrin.h:253:19: error: use of undeclared identifier '__builtin_ia32_punpckhwd' return (__m64)__builtin_ia32_punpckhwd((__v4hi)__m1, (__v4hi)__m2); ^ /usr/lib/clang/6.0.0/include/mmintrin.h:274:19: error: use of undeclared identifier '__builtin_ia32_punpckhdq' return (__m64)__builtin_ia32_punpckhdq((__v2si)__m1, (__v2si)__m2); ^ /usr/lib/clang/6.0.0/include/mmintrin.h:301:19: error: use of undeclared identifier '__builtin_ia32_punpcklbw' return (__m64)__builtin_ia32_punpcklbw((__v8qi)__m1, (__v8qi)__m2); ^ /usr/lib/clang/6.0.0/include/mmintrin.h:324:19: error: use of undeclared identifier '__builtin_ia32_punpcklwd' return (__m64)__builtin_ia32_punpcklwd((__v4hi)__m1, (__v4hi)__m2); ^ /usr/lib/clang/6.0.0/include/mmintrin.h:345:19: error: use of undeclared identifier '__builtin_ia32_punpckldq' return (__m64)__builtin_ia32_punpckldq((__v2si)__m1, (__v2si)__m2); ^ /usr/lib/clang/6.0.0/include/mmintrin.h:366:19: error: use of undeclared identifier '__builtin_ia32_paddb' return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2); ^ /usr/lib/clang/6.0.0/include/mmintrin.h:387:19: error: use of undeclared identifier '__builtin_ia32_paddw' return (__m64)__builtin_ia32_paddw((__v4hi)__m1, (__v4hi)__m2); ^ /usr/lib/clang/6.0.0/include/mmintrin.h:408:19: error: use of undeclared identifier '__builtin_ia32_paddd' return (__m64)__builtin_ia32_paddd((__v2si)__m1, (__v2si)__m2); ^ /usr/lib/clang/6.0.0/include/mmintrin.h:430:19: error: use of undeclared identifier '__builtin_ia32_paddsb' return (__m64)__builtin_ia32_paddsb((__v8qi)__m1, (__v8qi)__m2); ^ /usr/lib/clang/6.0.0/include/mmintrin.h:453:19: error: use of undeclared identifier '__builtin_ia32_paddsw' return (__m64)__builtin_ia32_paddsw((__v4hi)__m1, (__v4hi)__m2); ^ /usr/lib/clang/6.0.0/include/mmintrin.h:475:19: error: use of undeclared identifier '__builtin_ia32_paddusb' return (__m64)__builtin_ia32_paddusb((__v8qi)__m1, (__v8qi)__m2); ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. gmake[1]: *** [<builtin>: src/ssw.o] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/vcflib/work/vcflib-1.0.0-rc1-130-g7e3d806' *** Error code 1 Stop. make: stopped in /usr/ports/biology/vcflib
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