From owner-freebsd-pkg-fallout@freebsd.org Sun May 6 01:41:18 2018 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 4EF6DFC3E83 for ; Sun, 6 May 2018 01:41:18 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id CAC17824E1 for ; Sun, 6 May 2018 01:41:17 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id 84C38FC3E82; Sun, 6 May 2018 01:41:17 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 600B9FC3E81 for ; Sun, 6 May 2018 01:41:17 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 13A36824DC for ; Sun, 6 May 2018 01:41:17 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy14.nyi.freebsd.org (beefy14.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:e1]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 0E97925C92 for ; Sun, 6 May 2018 01:41:17 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy14.nyi.freebsd.org (localhost [127.0.0.1]) by beefy14.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id w461fHrO013996 for ; Sun, 6 May 2018 01:41:17 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy14.nyi.freebsd.org (8.15.2/8.15.2/Submit) id w461fHlb013993; Sun, 6 May 2018 01:41:17 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Sun, 6 May 2018 01:41:17 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201805060141.w461fHlb013993@beefy14.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 111mips-quarterly][biology/plinkseq] Failed for plinkseq-0.10_1 in build X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.25 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 06 May 2018 01:41:18 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Last committer: jwb@FreeBSD.org Ident: $FreeBSD: branches/2018Q2/biology/plinkseq/Makefile 460452 2018-01-31 01:07:07Z jwb $ Log URL: http://beefy14.nyi.freebsd.org/data/111mips-quarterly/469160/logs/plinkseq-0.10_1.log Build URL: http://beefy14.nyi.freebsd.org/build.html?mastername=111mips-quarterly&build=469160 Log: =>> Building biology/plinkseq build started at Sun May 6 01:30:16 UTC 2018 port directory: /usr/ports/biology/plinkseq package name: plinkseq-0.10_1 building for: FreeBSD 111mips-quarterly-job-18 11.1-RELEASE-p6 FreeBSD 11.1-RELEASE-p6 1101001 mips maintained by: jwb@FreeBSD.org Makefile ident: $FreeBSD: branches/2018Q2/biology/plinkseq/Makefile 460452 2018-01-31 01:07:07Z jwb $ Poudriere version: 3.2.6-3-g832b198d Host OSVERSION: 1200060 Jail OSVERSION: 1101001 Job Id: 18 ---Begin Environment--- POUDRIEREPATH=/usr/local/bin/poudriere SCRIPTPATH=/usr/local/share/poudriere/bulk.sh OLDPWD=/usr/local/poudriere/data/.m/111mips-quarterly/ref/.p SCRIPTPREFIX=/usr/local/share/poudriere MASTERNAME=111mips-quarterly P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS PWD=/usr/local/poudriere/data/.m/111mips-quarterly/ref/.p/pool SAVED_TERM= PACKAGE_BUILDING=yes POUDRIERE_BUILD_TYPE=bulk MASTERMNT=/usr/local/poudriere/data/.m/111mips-quarterly/ref POUDRIERE_VERSION=3.2.6-3-g832b198d LIBEXECPREFIX=/usr/local/libexec/poudriere USER=root QEMU_EMULATING=1 LOCALBASE=/usr/local PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin HOME=/root STATUS=1 MAIL=/var/mail/root BLOCKSIZE=K UNAME_r=11.1-RELEASE-p6 UNAME_v=FreeBSD 11.1-RELEASE-p6 1101001 OSVERSION=1101001 ABI_FILE=/usr/lib/crt1.o UNAME_m=mips UNAME_p=mips SHELL=/bin/csh ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/plinkseq/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/plinkseq/work HOME=/wrkdirs/usr/ports/biology/plinkseq/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/plinkseq/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/plinkseq/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/plinkseq/work HOME=/wrkdirs/usr/ports/biology/plinkseq/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/plinkseq/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" OSREL=11.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/plinkseq" EXAMPLESDIR="share/examples/plinkseq" DATADIR="share/plinkseq" WWWDIR="www/plinkseq" ETCDIR="etc/plinkseq" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/plinkseq DOCSDIR=/usr/local/share/doc/plinkseq EXAMPLESDIR=/usr/local/share/examples/plinkseq WWWDIR=/usr/local/www/plinkseq ETCDIR=/usr/local/etc/plinkseq --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=mips MACHINE_ARCH=mips ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=Using built-in specs. Target: mips-undermydesk-freebsd Configured with: FreeBSD/mips system compiler Thread model: posix gcc version 4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-EB" "-EB" "-melf32btsmip_fbsd" "--enable-new-dtags" "-dynamic-linker" "/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=cc1: error: unrecognized command line option "-std=c11" CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=cc1: error: unrecognized command line option "-std=gnu11" CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=cc1plus: error: unrecognized command line option "-std=c++0x" CC_OUTPUT_9d218390_f00456e5=cc1plus: error: unrecognized command line option "-std=c++11" CC_OUTPUT_9d218390_65ad290d=cc1plus: error: unrecognized command line option "-std=c++14" CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=cc1plus: error: unrecognized command line option "-std=gnu++11" _OBJC_CCVERSION_9d218390=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 2007 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. _OBJC_ALTCCVERSION_9d218390=none ARCH=mips OPSYS=FreeBSD _OSRELEASE=11.1-RELEASE-p6 OSREL=11.1 OSVERSION=1101001 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 131072 stack size (kbytes, -s) 8192 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License GPLv2 accepted by the user =========================================================================== =================================================== ===> plinkseq-0.10_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5.txz [111mips-quarterly-job-18] Installing pkg-1.10.5... [111mips-quarterly-job-18] Extracting pkg-1.10.5: .......... done ===> plinkseq-0.10_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of plinkseq-0.10_1 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by plinkseq-0.10_1 for building =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by plinkseq-0.10_1 for building => SHA256 Checksum OK for plinkseq-src-0.10.tgz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by plinkseq-0.10_1 for building ===> Extracting for plinkseq-0.10_1 => SHA256 Checksum OK for plinkseq-src-0.10.tgz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for plinkseq-0.10_1 ===> Applying FreeBSD patches for plinkseq-0.10_1 /nxb-bin/usr/bin/sed -i.bak -e 's|PF_INET|AF_INET|g' /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/mongoose/sources/lib/mongoose.c /nxb-bin/usr/bin/sed -i.bak -e 's|g++|/nxb-bin/usr/bin/c++|g' -e 's|gcc|/nxb-bin/usr/bin/cc|g' -e 's|CXXFLAGS = -O3|CXXFLAGS = -O2 -pipe -G0 -fno-strict-aliasing |g' -e 's|ALL_CFLAGS =-O3|ALL_CFLAGS = -O2 -pipe -G0 -fno-strict-aliasing|g' /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/config_defs.Makefile /nxb-bin/usr/bin/sed -i.bak -e 's| -ldl||g' -e 's| $(STATIC_FLAG)||g' /wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/Makefile =========================================================================== =================================================== ===> plinkseq-0.10_1 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_2.txz [111mips-quarterly-job-18] Installing gmake-4.2.1_2... [111mips-quarterly-job-18] `-- Installing gettext-runtime-0.19.8.1_1... [111mips-quarterly-job-18] | `-- Installing indexinfo-0.3.1... [111mips-quarterly-job-18] | `-- Extracting indexinfo-0.3.1: .... done [111mips-quarterly-job-18] `-- Extracting gettext-runtime-0.19.8.1_1: .......... done [111mips-quarterly-job-18] Extracting gmake-4.2.1_2: .......... done ===> plinkseq-0.10_1 depends on executable: gmake - found ===> Returning to build of plinkseq-0.10_1 =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for plinkseq-0.10_1 =========================================================================== =================================================== ===> Building for plinkseq-0.10_1 gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10' mkdir -p build/lib mkdir -p build/execs making depend sources/execs/pseq.cpp making depend sources/execs/gcol.cpp making depend sources/execs/browser.cpp making depend sources/execs/behead.cpp making depend sources/execs/mm.cpp making depend sources/execs/smp.cpp making depend sources/execs/tab2vcf.cpp making depend sources/execs/mongoose.cpp making depend sources/execs/pdas.cpp /usr/local/bin/gmake ./sources/plinkseq ./sources/pseq ./sources/util ./sources/mongoose ./sources/browser ./sources/pdas ./sources/ext gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10' /usr/local/bin/gmake DBGCXXFLAGS="" USE_DEBUG="" -C sources/plinkseq gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/plinkseq' mkdir -p build/lib making depend sources/lib/sqlite3.c making depend sources/lib/network.cpp making depend sources/lib/seqdb.cpp making depend sources/lib/genotype.cpp making depend sources/lib/reffuncs.cpp making depend sources/lib/r8lib.cpp making depend sources/lib/statistics.cpp making depend sources/lib/netfunc.cpp making depend sources/lib/filemap.cpp making depend sources/lib/matrix.cpp making depend sources/lib/allele.cpp making depend sources/lib/locdb.cpp making depend sources/lib/vcf.cpp making depend sources/lib/varmeta.cpp making depend sources/lib/globals.cpp making depend sources/lib/dcdflib.cpp making depend sources/lib/inddb.cpp making depend sources/lib/eval.cpp making depend sources/lib/matrix.pb.cpp In file included from ../ext/sources/include/google/protobuf/stubs/atomicops.h:59, from ../ext/sources/include/google/protobuf/stubs/once.h:81, from sources/lib/matrix.pb.cpp:10: ./ext/sources/include/google/protobuf/stubs/platform_macros.h:61:2: error: #error Host architecture was not detected as supported by protobuf making depend sources/lib/matdb.cpp making depend sources/lib/segments.cpp making depend sources/lib/c8lib.cpp making depend sources/lib/dose.cpp making depend sources/lib/variant.cpp making depend sources/lib/varfunc.cpp making depend sources/lib/indmap.cpp making depend sources/lib/individual.cpp making depend sources/lib/annot.cpp making depend sources/lib/iterate.cpp making depend sources/lib/crandom.cpp making depend sources/lib/em.cpp making depend sources/lib/bed.cpp making depend sources/lib/vcfiterate.cpp making depend sources/lib/zfstream.cpp making depend sources/lib/netdb.cpp making depend sources/lib/permute.cpp making depend sources/lib/helper.cpp making depend sources/lib/glm.cpp making depend sources/lib/prob.cpp making depend sources/lib/phmap.cpp making depend sources/lib/variant.pb.cpp In file included from ../ext/sources/include/google/protobuf/stubs/atomicops.h:59, from ../ext/sources/include/google/protobuf/stubs/once.h:81, from sources/lib/variant.pb.cpp:10: ./ext/sources/include/google/protobuf/stubs/platform_macros.h:61:2: error: #error Host architecture was not detected as supported by protobuf making depend sources/lib/svar.cpp making depend sources/lib/output.cpp making depend sources/lib/vardb.cpp making depend sources/lib/vgroup.cpp making depend sources/lib/vcfz.cpp making depend sources/lib/protdb.cpp making depend sources/lib/matrix_exponential.cpp making depend sources/lib/gstore.cpp making depend sources/lib/mask.cpp making depend sources/lib/regions.cpp making depend sources/lib/token.cpp making depend sources/lib/fisher.cpp making depend sources/lib/refdb.cpp making depend sources/lib/meta.cpp making depend sources/lib/defs.cpp making depend sources/lib/sqlwrap.cpp making depend sources/lib/bcf.cpp making depend sources/lib/bgzf.cpp /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/bgzf.cpp -o build/lib/bgzf.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/bcf.cpp -o build/lib/bcf.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/sqlwrap.cpp -o build/lib/sqlwrap.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/defs.cpp -o build/lib/defs.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/meta.cpp -o build/lib/meta.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/refdb.cpp -o build/lib/refdb.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/fisher.cpp -o build/lib/fisher.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/token.cpp -o build/lib/token.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/regions.cpp -o build/lib/regions.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/mask.cpp -o build/lib/mask.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/gstore.cpp -o build/lib/gstore.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/matrix_exponential.cpp -o build/lib/matrix_exponential.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/protdb.cpp -o build/lib/protdb.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/vcfz.cpp -o build/lib/vcfz.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/vgroup.cpp -o build/lib/vgroup.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/vardb.cpp -o build/lib/vardb.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/output.cpp -o build/lib/output.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/svar.cpp -o build/lib/svar.o /nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -fno-strict-aliasing -I./sources/include -I../ext/sources/include/ sources/lib/variant.pb.cpp -o build/lib/variant.pb.o In file included from ../ext/sources/include/google/protobuf/stubs/atomicops.h:59, from ../ext/sources/include/google/protobuf/stubs/once.h:81, from sources/lib/variant.pb.cpp:10: ./ext/sources/include/google/protobuf/stubs/platform_macros.h:61:2: error: #error Host architecture was not detected as supported by protobuf In file included from ../ext/sources/include/google/protobuf/stubs/once.h:81, from sources/lib/variant.pb.cpp:10: ./ext/sources/include/google/protobuf/stubs/atomicops.h:188: error: stray '#' in program ./ext/sources/include/google/protobuf/stubs/atomicops.h:188: error: expected constructor, destructor, or type conversion before string constant gmake[3]: *** [../../config_rules.Makefile:16: build/lib/variant.pb.o] Error 1 gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/plinkseq' gmake[2]: *** [Makefile:170: sources/plinkseq] Error 2 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10' gmake[1]: *** [Makefile:165: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10' *** Error code 1 Stop. make: stopped in /usr/ports/biology/plinkseq