Date: Fri, 22 Feb 2002 14:40:42 +1100 (EST) From: Tony Maher <tonym@biolateral.com.au> To: FreeBSD-gnats-submit@freebsd.org Subject: ports/35198: New port: biology/crimap Message-ID: <200202220340.g1M3eff27982@c31516.thorn1.nsw.optusnet.com.au>
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>Number: 35198 >Category: ports >Synopsis: New port: biology/crimap >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Thu Feb 21 19:50:01 PST 2002 >Closed-Date: >Last-Modified: >Originator: Tony Maher >Release: FreeBSD 4.5-STABLE i386 >Organization: BioLateral >Environment: System: FreeBSD dt.home 4.5-STABLE FreeBSD 4.5-STABLE #0: Fri Feb 22 12:29:39 EST 2002 root@dt.home:/usr/obj/usr/src/sys/DT i386 >Description: New port: biology/crimap "The main purpose of CRI-MAP is to allow rapid, largely automated construction of multilocus linkage maps (and facilitate the attendant tasks of assessing support relative to alternative locus orders, generating LOD tables, and detecting data errors)." - from the documentation Note 1: there is *no* copyright or licence that goes with this software as far as I can see. I tried to contact author phg@u.washington.edu on Fri Dec 21 17:25:49 2001 but received no response. Note 2: this program is non-intuitive to use, but biologist tend to like it that way ;-) Read the documentation if you really want to know how to drive it. Do not be surprised if you get coredumps or weird messges if don't drive it correctly! >How-To-Repeat: >Fix: # This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # crimap # crimap/Makefile # crimap/pkg-plist # crimap/pkg-descr # crimap/pkg-comment # crimap/distinfo # echo c - crimap mkdir -p crimap > /dev/null 2>&1 echo x - crimap/Makefile sed 's/^X//' >crimap/Makefile << 'END-of-crimap/Makefile' X# New ports collection makefile for: crimap X# Date created: 4 December 2001 X# Whom: Tony Maher <tonym@biolateral.com.au> X# X# $FreeBSD$ X# X XPORTNAME= crimap XPORTVERSION= 2.4 XCATEGORIES= biology XMASTER_SITES= http://compgen.rutgers.edu/multimap/crimap/ XDISTNAME= ${PORTNAME}.source XEXTRACT_SUFX= .tar.Z X XMAINTAINER= tonym@biolateral.com.au X XNO_WRKSUBDIR= true X XPROGRAMS= crimap XEXAMPLES= chr7a.gen demo.dat X Xdo-build: X cd ${WRKSRC}; \ X cc -O -o crimap *.c -lm X Xdo-install: X.for file in ${PROGRAMS} X ${INSTALL_PROGRAM} ${WRKSRC}/${file} ${PREFIX}/bin X strip ${PREFIX}/bin/${file} X.endfor X.if !defined(NOPORTDOCS) X @${MKDIR} ${EXAMPLESDIR} X @${MKDIR} ${DOCSDIR} X ${CAT} ${WRKSRC}/progdoc_v2.4 | tbl | eqn -Tlatin1 | nroff -ms -t \ X > ${DOCSDIR}/progdoc_v2.4 X.for file in ${EXAMPLES} X ${INSTALL_DATA} ${WRKSRC}/${file} ${EXAMPLESDIR} X.endfor X.endif X X.include <bsd.port.mk> END-of-crimap/Makefile echo x - crimap/pkg-plist sed 's/^X//' >crimap/pkg-plist << 'END-of-crimap/pkg-plist' Xbin/crimap X%%PORTDOCS%%share/doc/crimap/progdoc_v2.4 X%%PORTDOCS%%share/examples/crimap/chr7a.gen X%%PORTDOCS%%share/examples/crimap/demo.dat X%%PORTDOCS%%@dirrm share/doc/crimap X%%PORTDOCS%%@dirrm share/examples/crimap END-of-crimap/pkg-plist echo x - crimap/pkg-descr sed 's/^X//' >crimap/pkg-descr << 'END-of-crimap/pkg-descr' X"The main purpose of CRI-MAP is to allow rapid, largely automated Xconstruction of multilocus linkage maps (and facilitate the attendant Xtasks of assessing support relative to alternative locus orders, Xgenerating LOD tables, and detecting data errors)." X- from the documentation X XWWW: http://compgen.rutgers.edu/multimap/crimap/ X X-- XTony Maher <tonym@biolateral.com.au> END-of-crimap/pkg-descr echo x - crimap/pkg-comment sed 's/^X//' >crimap/pkg-comment << 'END-of-crimap/pkg-comment' XCreation of multilocus linkage maps END-of-crimap/pkg-comment echo x - crimap/distinfo sed 's/^X//' >crimap/distinfo << 'END-of-crimap/distinfo' XMD5 (crimap.source.tar.Z) = bd5b445901feb9c1aa3c2926a3dc7353 END-of-crimap/distinfo exit >Release-Note: >Audit-Trail: >Unformatted: To Unsubscribe: send mail to majordomo@FreeBSD.org with "unsubscribe freebsd-ports" in the body of the message
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