From owner-dev-commits-ports-main@freebsd.org Wed Apr 21 07:58:35 2021 Return-Path: Delivered-To: dev-commits-ports-main@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id AFE0D5FB421; Wed, 21 Apr 2021 07:58:35 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4FQCbv3rsRz4m3q; Wed, 21 Apr 2021 07:58:35 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 399CF22980; Wed, 21 Apr 2021 07:58:35 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 13L7wZKY019140; Wed, 21 Apr 2021 07:58:35 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 13L7wZ1v019139; Wed, 21 Apr 2021 07:58:35 GMT (envelope-from git) Date: Wed, 21 Apr 2021 07:58:35 GMT Message-Id: <202104210758.13L7wZ1v019139@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Kai Knoblich Subject: git: 256e9bc3b5b9 - main - biology/py-crossmap: Fix build with Python 3.8+ MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: kai X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 256e9bc3b5b97069231e16e2be057e313e9bb7bc Auto-Submitted: auto-generated X-BeenThere: dev-commits-ports-main@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: Commits to the main branch of the FreeBSD ports repository List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 21 Apr 2021 07:58:35 -0000 The branch main has been updated by kai: URL: https://cgit.FreeBSD.org/ports/commit/?id=256e9bc3b5b97069231e16e2be057e313e9bb7bc commit 256e9bc3b5b97069231e16e2be057e313e9bb7bc Author: Kai Knoblich AuthorDate: 2021-04-21 07:44:44 +0000 Commit: Kai Knoblich CommitDate: 2021-04-21 07:44:44 +0000 biology/py-crossmap: Fix build with Python 3.8+ * Add missing dependency devel/py-nose that is required to build. With Python 3.6/3.7 there are no build issues because the sdist contains Python Eggs of "nose" for these versions. While I'm here: * Set NO_ARCH because the port has no architecture specific files. * Make it concurrent safe, package installs a script and bump PORTREVISION due package change. PR: 253815 Approved by: portmgr (build fix) MFH: No (The port was added after the 2021Q1 branch) --- biology/py-crossmap/Makefile | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/biology/py-crossmap/Makefile b/biology/py-crossmap/Makefile index 7946de949b5e..30b8bee8f5af 100644 --- a/biology/py-crossmap/Makefile +++ b/biology/py-crossmap/Makefile @@ -1,5 +1,6 @@ PORTNAME= crossmap DISTVERSION= 0.5.2 +PORTREVISION= 1 CATEGORIES= biology python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -11,11 +12,14 @@ COMMENT= Lift over genomics coordinates between assemblies LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE.txt +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}nose>0.10.4:devel/py-nose@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pysam>0:biology/py-pysam@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}bx-python>0:biology/py-bx-python@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyBigWig>0:biology/py-bigwig@${PY_FLAVOR} USES= python:3.5+ -USE_PYTHON= autoplist cython distutils +USE_PYTHON= autoplist concurrent cython distutils + +NO_ARCH= yes .include