Date: Sun, 1 Dec 2019 03:11:55 GMT From: pkg-fallout@FreeBSD.org To: yuri@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - head-amd64-default][biology/cufflinks] Failed for cufflinks-2.2.1.83_1 in build Message-ID: <201912010311.xB13Btit077932@beefy18.nyi.freebsd.org>
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Maintainer: yuri@FreeBSD.org Last committer: jbeich@FreeBSD.org Ident: $FreeBSD: head/biology/cufflinks/Makefile 509290 2019-08-19 15:35:27Z jbeich $ Log URL: http://beefy18.nyi.freebsd.org/data/head-amd64-default/p518745_s355256/logs/cufflinks-2.2.1.83_1.log Build URL: http://beefy18.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p518745_s355256 Log: =>> Building biology/cufflinks build started at Sun Dec 1 03:10:46 UTC 2019 port directory: /usr/ports/biology/cufflinks package name: cufflinks-2.2.1.83_1 building for: FreeBSD head-amd64-default-job-06 13.0-CURRENT FreeBSD 13.0-CURRENT 1300061 amd64 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/biology/cufflinks/Makefile 509290 2019-08-19 15:35:27Z jbeich $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300047 Jail OSVERSION: 1300061 Job Id: 06 !!! Jail is newer than host. (Jail: 1300061, Host: 1300047) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300061 UNAME_v=FreeBSD 13.0-CURRENT 1300061 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cufflinks/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cufflinks/work HOME=/wrkdirs/usr/ports/biology/cufflinks/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cufflinks/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cufflinks/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cufflinks/work HOME=/wrkdirs/usr/ports/biology/cufflinks/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cufflinks/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -I/usr/local/include/eigen3 -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -I/usr/local/include/eigen3 -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/eigen3 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cufflinks" EXAMPLESDIR="share/examples/cufflinks" DATADIR="share/cufflinks" WWWDIR="www/cufflinks" ETCDIR="etc/cufflinks" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cufflinks DOCSDIR=/usr/local/share/doc/cufflinks EXAMPLESDIR=/usr/local/share/examples/cufflinks WWWDIR=/usr/local/www/cufflinks ETCDIR=/usr/local/etc/cufflinks --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 9.0.0 (tags/RELEASE_900/final 372316) (based on LLVM 9.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 9.0.0 (tags/RELEASE_900/final 372316) (based on LLVM 9.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 9.0.0 (tags/RELEASE_900/final 372316) (based on LLVM 9.0.0) Target: x86_64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300061 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSL accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> cufflinks-2.2.1.83_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0.txz [head-amd64-default-job-06] Installing pkg-1.12.0... [head-amd64-default-job-06] Extracting pkg-1.12.0: .......... done ===> cufflinks-2.2.1.83_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of cufflinks-2.2.1.83_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSL accepted by the user ===> Fetching all distfiles required by cufflinks-2.2.1.83_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSL accepted by the user ===> Fetching all distfiles required by cufflinks-2.2.1.83_1 for building => SHA256 Checksum OK for cole-trapnell-lab-cufflinks-v2.2.1-83-gb4fa050_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSL accepted by the user ===> Fetching all distfiles required by cufflinks-2.2.1.83_1 for building ===> Extracting for cufflinks-2.2.1.83_1 => SHA256 Checksum OK for cole-trapnell-lab-cufflinks-v2.2.1-83-gb4fa050_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for cufflinks-2.2.1.83_1 ===> Applying FreeBSD patches for cufflinks-2.2.1.83_1 =========================================================================== =======================<phase: build-depends >============================ ===> cufflinks-2.2.1.83_1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.3.7.txz [head-amd64-default-job-06] Installing eigen-3.3.7... [head-amd64-default-job-06] Extracting eigen-3.3.7: .......... done ===> cufflinks-2.2.1.83_1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of cufflinks-2.2.1.83_1 ===> cufflinks-2.2.1.83_1 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz [head-amd64-default-job-06] Installing gmake-4.2.1_3... [head-amd64-default-job-06] `-- Installing gettext-runtime-0.20.1... <snip> mv -f .deps/clustering.Tpo .deps/clustering.Po c++ -DHAVE_CONFIG_H -I. -I.. -I../src -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wunused -Wuninitialized -ftemplate-depth-1024 -O3 -O2 -pipe -I/usr/local/include/eigen3 -fstack-protector-strong -fno-strict-aliasing -DNDEBUG -pthread -I/usr/local/include -I/usr/local/include -MT differential.o -MD -MP -MF .deps/differential.Tpo -c -o differential.o differential.cpp In file included from cufflinks.cpp:23: In file included from ./filters.h:18: ./genes.h:210:6: warning: private field '_id' is not used [-Wunused-private-field] int _id; ^ 45 warnings and 1 error generated. gmake[3]: *** [Makefile:1672: cufflinks.o] Error 1 gmake[3]: *** Waiting for unfinished jobs.... In file included from differential.cpp:20: In file included from ./abundances.h:23: ./hits.h:906:48: warning: field '_expression_file_name' will be initialized after field '_ifs' [-Wreorder] HitFactory(insert_table, reference_table), _expression_file_name(expression_file_name), _ifs(expression_file_name.c_str()), ^ In file included from differential.cpp:20: In file included from ./abundances.h:25: In file included from ./bundles.h:24: In file included from ./gtf_tracking.h:12: In file included from ./gff.h:11: ./GHash.hh:90:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int pos=fCurrentEntry; ^~~~~~~~~ ./GHash.hh:168:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int i,n,p,x,h; ^~~~~~~~~ ./GHash.hh:168:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int i,n,p,x,h; ^~~~~~~~~ ./GHash.hh:168:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int i,n,p,x,h; ^~~~~~~~~ ./GHash.hh:168:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int i,n,p,x,h; ^~~~~~~~~ ./GHash.hh:168:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int i,n,p,x,h; ^~~~~~~~~ ./GHash.hh:202:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:202:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:202:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:202:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:202:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:243:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:243:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:243:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:243:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:243:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:285:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:285:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:285:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:285:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:285:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:327:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:327:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:327:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:327:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:364:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:364:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:364:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:364:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:387:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:387:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:387:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:387:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:416:2: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int pos=fCurrentEntry; ^~~~~~~~~ ./GHash.hh:429:2: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int pos=fCurrentEntry; ^~~~~~~~~ ./GHash.hh:443:2: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int pos=fCurrentEntry; ^~~~~~~~~ ./GHash.hh:461:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int pos=0; ^~~~~~~~~ ./GHash.hh:469:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int pos=fCapacity-1; ^~~~~~~~~ ./GHash.hh:496:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int i; ^~~~~~~~~ ./GHash.hh:553:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int i; ^~~~~~~~~ In file included from differential.cpp:21: In file included from ./differential.h:29: ./replicates.h:224:57: warning: unused variable 's2' [-Wunused-variable] const vector<boost::shared_ptr<Scaffold> >& s2 = bundles[i-1]->ref_scaffolds(); ^ In file included from differential.cpp:21: ./differential.h:215:5: warning: field 'sample_labels' will be initialized after field 'headers_written' [-Wreorder] sample_labels(sls), ^ ./differential.h:614:56: warning: more '%' conversions than data arguments [-Wformat] fprintf(fout, "%s_%d\t%s\t%Lg\t%lg\t%lg\t%lg\n", ~~^ differential.cpp:134:31: warning: unused variable 's2' [-Wunused-variable] const AbundanceGroup& s2 = prev.transcripts; ^ differential.cpp:163:31: warning: unused variable 's2' [-Wunused-variable] const AbundanceGroup& s2 = prev.transcripts; ^ In file included from differential.cpp:24: ./sampling.h:50:13: warning: unused typedef 'matrix_type' [-Wunused-local-typedef] typedef M matrix_type; ^ ./sampling.h:114:42: warning: unused typedef 'vector_type' [-Wunused-local-typedef] typedef vector<typename E::value_type> vector_type; ^ ./sampling.h:113:19: warning: unused typedef 'const_matrix_type' [-Wunused-local-typedef] typedef const M const_matrix_type; ^ ./sampling.h:121:42: warning: unused typedef 'matrix_type' [-Wunused-local-typedef] typedef matrix<typename E::value_type> matrix_type; ^ ./sampling.h:120:19: warning: unused typedef 'const_matrix_type' [-Wunused-local-typedef] typedef const M const_matrix_type; ^ ./sampling.h:127:19: warning: unused typedef 'const_matrix_type' [-Wunused-local-typedef] typedef const M const_matrix_type; ^ ./sampling.h:128:42: warning: unused typedef 'vector_type' [-Wunused-local-typedef] typedef vector<typename E::value_type> vector_type; ^ ./sampling.h:135:42: warning: unused typedef 'matrix_type' [-Wunused-local-typedef] typedef matrix<typename E::value_type> matrix_type; ^ ./sampling.h:134:19: warning: unused typedef 'const_matrix_type' [-Wunused-local-typedef] typedef const M const_matrix_type; ^ 55 warnings generated. mv -f .deps/differential.Tpo .deps/differential.Po gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/cufflinks/work/cufflinks-2.2.1-83-gb4fa050/src' gmake[2]: *** [Makefile:400: all-recursive] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/cufflinks/work/cufflinks-2.2.1-83-gb4fa050' gmake[1]: *** [Makefile:341: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/cufflinks/work/cufflinks-2.2.1-83-gb4fa050' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/cufflinks
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