Date: Wed, 21 Apr 2021 07:58:35 GMT From: Kai Knoblich <kai@FreeBSD.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org Subject: git: 256e9bc3b5b9 - main - biology/py-crossmap: Fix build with Python 3.8+ Message-ID: <202104210758.13L7wZ1v019139@gitrepo.freebsd.org>
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The branch main has been updated by kai: URL: https://cgit.FreeBSD.org/ports/commit/?id=256e9bc3b5b97069231e16e2be057e313e9bb7bc commit 256e9bc3b5b97069231e16e2be057e313e9bb7bc Author: Kai Knoblich <kai@FreeBSD.org> AuthorDate: 2021-04-21 07:44:44 +0000 Commit: Kai Knoblich <kai@FreeBSD.org> CommitDate: 2021-04-21 07:44:44 +0000 biology/py-crossmap: Fix build with Python 3.8+ * Add missing dependency devel/py-nose that is required to build. With Python 3.6/3.7 there are no build issues because the sdist contains Python Eggs of "nose" for these versions. While I'm here: * Set NO_ARCH because the port has no architecture specific files. * Make it concurrent safe, package installs a script and bump PORTREVISION due package change. PR: 253815 Approved by: portmgr (build fix) MFH: No (The port was added after the 2021Q1 branch) --- biology/py-crossmap/Makefile | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/biology/py-crossmap/Makefile b/biology/py-crossmap/Makefile index 7946de949b5e..30b8bee8f5af 100644 --- a/biology/py-crossmap/Makefile +++ b/biology/py-crossmap/Makefile @@ -1,5 +1,6 @@ PORTNAME= crossmap DISTVERSION= 0.5.2 +PORTREVISION= 1 CATEGORIES= biology python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} @@ -11,11 +12,14 @@ COMMENT= Lift over genomics coordinates between assemblies LICENSE= GPLv2 LICENSE_FILE= ${WRKSRC}/LICENSE.txt +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}nose>0.10.4:devel/py-nose@${PY_FLAVOR} RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pysam>0:biology/py-pysam@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}bx-python>0:biology/py-bx-python@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}pyBigWig>0:biology/py-bigwig@${PY_FLAVOR} USES= python:3.5+ -USE_PYTHON= autoplist cython distutils +USE_PYTHON= autoplist concurrent cython distutils + +NO_ARCH= yes .include <bsd.port.mk>
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