From owner-freebsd-pkg-fallout@freebsd.org Fri Apr 19 07:57:57 2019 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 0FE99158881A for ; Fri, 19 Apr 2019 07:57:56 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id BD1A26B94A for ; Fri, 19 Apr 2019 07:57:54 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id 763F21588816; Fri, 19 Apr 2019 07:57:54 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id AED241588815 for ; Fri, 19 Apr 2019 07:57:53 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 61FE46B946; Fri, 19 Apr 2019 07:57:53 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy11.nyi.freebsd.org (beefy11.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:ee]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 3CDF72B684; Fri, 19 Apr 2019 07:57:53 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy11.nyi.freebsd.org (localhost [127.0.0.1]) by beefy11.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id x3J7vrdd059128; Fri, 19 Apr 2019 07:57:53 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy11.nyi.freebsd.org (8.15.2/8.15.2/Submit) id x3J7vr67059122; Fri, 19 Apr 2019 07:57:53 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Fri, 19 Apr 2019 07:57:53 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201904190757.x3J7vr67059122@beefy11.nyi.freebsd.org> To: yuri@FreeBSD.org Subject: [package - head-i386-default][science/gromacs] Failed for gromacs-2019.1_1 in build Cc: pkg-fallout@FreeBSD.org X-Rspamd-Queue-Id: 61FE46B946 X-Spamd-Bar: -- Authentication-Results: mx1.freebsd.org X-Spamd-Result: default: False [-2.98 / 15.00]; local_wl_from(0.00)[FreeBSD.org]; NEURAL_HAM_MEDIUM(-1.00)[-0.999,0]; NEURAL_HAM_SHORT(-0.98)[-0.981,0]; ASN(0.00)[asn:11403, ipnet:2610:1c1:1::/48, country:US]; NEURAL_HAM_LONG(-1.00)[-1.000,0] X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 19 Apr 2019 07:57:57 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: jbeich@FreeBSD.org Ident: $FreeBSD: head/science/gromacs/Makefile 498698 2019-04-12 06:36:31Z jbeich $ Log URL: http://beefy11.nyi.freebsd.org/data/head-i386-default/p499228_s346255/logs/gromacs-2019.1_1.log Build URL: http://beefy11.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p499228_s346255 Log: =>> Building science/gromacs build started at Fri Apr 19 07:31:45 UTC 2019 port directory: /usr/ports/science/gromacs package name: gromacs-2019.1_1 building for: FreeBSD head-i386-default-job-06 13.0-CURRENT FreeBSD 13.0-CURRENT 1300018 i386 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/gromacs/Makefile 498698 2019-04-12 06:36:31Z jbeich $ Poudriere version: 3.2.8-3-g02cc9753 Host OSVERSION: 1300009 Jail OSVERSION: 1300018 Job Id: 06 !!! Jail is newer than host. (Jail: 1300018, Host: 1300009) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1300018 UNAME_v=FreeBSD 13.0-CURRENT 1300018 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-3-g02cc9753 MASTERMNT=/usr/local/poudriere/data/.m/head-i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for gromacs-2019.1_1: ATLAS=off: Use ATLAS for BLAS and LAPACK FLOAT=on: Use single instead of double precision OPENCL=off: Heterogeneous computing via OpenCL OPENMP=on: Parallel processing support via OpenMP SIMD=off: Use CPU-specific optimizations X11=on: X11 (graphics) support ====> Multiprocessing: you have to select exactly one of them NOMP=off: No multiprocessing support MPICH=off: Parallel processing support via MPICH OPENMPI=off: Parallel processing support via Open MPI THREAD_MPI=on: Build a thread-MPI-based multithreaded version of GROMACS ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/gromacs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran8" FC="gfortran8" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc8" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc8" PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/gromacs/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 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NO_ATLAS="" FLOAT="" NO_FLOAT="@comment " SUFFIX_D="" MPICH="@comment " NO_MPICH="" NOMP="@comment " NO_NOMP="" OPENCL="@comment " NO_OPENCL="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" SIMD="@comment " NO_SIMD="" THREAD_MPI="" NO_THREAD_MPI="@comment " SUFFIX_MPI="" X11="" NO_X11="@comment " CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.28.1 PERL_VER=5.28 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.28 DOCSDIR="share/doc/gromacs" EXAMPLESDIR="share/examples/gromacs" DATADIR="share/gromacs" WWWDIR="www/gromacs" ETCDIR="etc/gromacs" --End PLIST_SUB-- --SUB_LIST-- ATLAS="@comment " NO_ATLAS="" FLOAT="" NO_FLOAT="@comment " MPICH="@comment " NO_MPICH="" NOMP="@comment " NO_NOMP="" OPENCL="@comment " NO_OPENCL="" OPENMP="" NO_OPENMP="@comment " OPENMPI="@comment " NO_OPENMPI="" SIMD="@comment " NO_SIMD="" THREAD_MPI="" NO_THREAD_MPI="@comment " X11="" NO_X11="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gromacs DOCSDIR=/usr/local/share/doc/gromacs EXAMPLESDIR=/usr/local/share/examples/gromacs WWWDIR=/usr/local/www/gromacs ETCDIR=/usr/local/etc/gromacs --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300018 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License LGPL21 accepted by the user =========================================================================== =================================================== ===> gromacs-2019.1_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [head-i386-default-job-06] Installing pkg-1.10.5_5... [head-i386-default-job-06] Extracting pkg-1.10.5_5: .......... done ===> gromacs-2019.1_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of gromacs-2019.1_1 =========================================================================== =================================================== =========================================================================== =================================================== ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-2019.1_1 for building =========================================================================== =================================================== ===> License LGPL21 accepted by the user ===> Fetching all distfiles required by gromacs-2019.1_1 for building => SHA256 Checksum OK for gromacs-2019.1.tar.gz. =========================================================================== =================================================== cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -fopenmp=libomp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/gromacs/mdlib/vsite.cpp [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -fopenmp=libomp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/gromacs/mdlib/wall.cpp [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -fopenmp=libomp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/gromacs/mdlib/wnblist.cpp [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -fopenmp=libomp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/gromacs/applied-forces/electricfield.cpp [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -fopenmp=libomp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/gromacs/listed-forces/bonded.cpp [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -fopenmp=libomp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/gromacs/listed-forces/disre.cpp [ 89%] Building CXX object 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object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o cd /wrkdirs/usr/ports/science/gromacs/work/.build/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/wrkdirs/usr/ports/science/gromacs/work/.build/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src -I/wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/lmfit -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/thread_mpi/include -isystem /usr/local/include -isystem /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/external/tng_io/include -isystem /wrkdirs/usr/ports/science/gromacs/work/.build/tng/include -O2 -pipe -fstack-protector -fno-strict-aliasing -std=c++11 -O2 -pipe -fstack-protector -fno-strict-aliasing -fPIC -fopenmp=libomp -o CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o -c /wrkdirs/usr/ports/science/gromacs/work/gromacs-2019.1/src/gromacs/mimic/MimicUtils.cpp [ 97%] Building CXX object 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