Date: Tue, 18 Dec 2018 20:04:05 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 120arm64-quarterly][devel/R-cran-ModelMetrics] Failed for R-cran-ModelMetrics-1.2.0 in stage Message-ID: <201812182004.wBIK45JR042022@thunderx1.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: tota@FreeBSD.org Last committer: tota@FreeBSD.org Ident: $FreeBSD: branches/2018Q4/devel/R-cran-ModelMetrics/Makefile 477646 2018-08-20 10:34:48Z tota $ Log URL: http://thunderx1.nyi.freebsd.org/data/120arm64-quarterly/487334/logs/R-cran-ModelMetrics-1.2.0.log Build URL: http://thunderx1.nyi.freebsd.org/build.html?mastername=120arm64-quarterly&build=487334 Log: =>> Building devel/R-cran-ModelMetrics build started at Tue Dec 18 20:01:29 UTC 2018 port directory: /usr/ports/devel/R-cran-ModelMetrics package name: R-cran-ModelMetrics-1.2.0 building for: FreeBSD 120arm64-quarterly-job-06 12.0-RELEASE FreeBSD 12.0-RELEASE 1200086 arm64 maintained by: tota@FreeBSD.org Makefile ident: $FreeBSD: branches/2018Q4/devel/R-cran-ModelMetrics/Makefile 477646 2018-08-20 10:34:48Z tota $ Poudriere version: 3.2.8 Host OSVERSION: 1300002 Jail OSVERSION: 1200086 Job Id: 06 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1200086 UNAME_v=FreeBSD 12.0-RELEASE 1200086 UNAME_r=12.0-RELEASE BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8 MASTERMNT=/usr/local/poudriere/data/.m/120arm64-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/120arm64-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=120arm64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/120arm64-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- tota@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran7" FC="gfortran7" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc7" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc7" XDG_DATA_HOME=/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work HOME=/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran7" FC="gfortran7" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc7" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc7" XDG_DATA_HOME=/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work HOME=/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing " CP P="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc7 -L/usr/local/lib/gcc7 -B/usr/local/bin " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/ModelMetrics OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/ModelMetrics" EXAMPLESDIR="share/examples/ModelMetrics" DATADIR="share/ModelMetrics" WWWDIR="www/ModelMetrics" ETCDIR="etc/ModelMetrics" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ModelMetrics DOCSDIR=/usr/local/share/doc/ModelMetrics EXAMPLESDIR=/usr/local/share/examples/ModelMetrics WWWDIR=/usr/local/www/ModelMetrics ETCDIR=/usr/local/etc/ModelMetrics --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: aarch64-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: aarch64-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: aarch64-unknown-freebsd12.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=aarch64 OPSYS=FreeBSD _OSRELEASE=12.0-RELEASE OSREL=12.0 OSVERSION=1200086 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2+ accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> R-cran-ModelMetrics-1.2.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [120arm64-quarterly-job-06] Installing pkg-1.10.5_5... [120arm64-quarterly-job-06] Extracting pkg-1.10.5_5: .......... done ===> R-cran-ModelMetrics-1.2.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-ModelMetrics-1.2.0 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by R-cran-ModelMetrics-1.2.0 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by R-cran-ModelMetrics-1.2.0 for building => SHA256 Checksum OK for ModelMetrics_1.2.0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2+ accepted by the user ===> Fetching all distfiles required by R-cran-ModelMetrics-1.2.0 for building ===> Extracting for R-cran-ModelMetrics-1.2.0 => SHA256 Checksum OK for ModelMetrics_1.2.0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for R-cran-ModelMetrics-1.2.0 =========================================================================== =======================<phase: build-depends >============================ ===> R-cran-ModelMetrics-1.2.0 depends on package: R-cran-Rcpp>0 - not found ===> Installing existing package /packages/All/R-cran-Rcpp-0.12.18.txz [120arm64-quarterly-job-06] Installing R-cran-Rcpp-0.12.18... [120arm64-quarterly-job-06] `-- Installing R-3.5.1_1... [120arm64-quarterly-job-06] | `-- Installing cairo-1.15.12,2... [120arm64-quarterly-job-06] | | `-- Installing fontconfig-2.12.6,1... [120arm64-quarterly-job-06] | | `-- Installing expat-2.2.6_1... [120arm64-quarterly-job-06] | | `-- Extracting expat-2.2.6_1: .......... done [120arm64-quarterly-job-06] | | `-- Installing freetype2-2.9.1... [120arm64-quarterly-job-06] | | `-- Extracting freetype2-2.9.1: .......... done [120arm64-quarterly-job-06] | | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory <snip> [120arm64-quarterly-job-06] | | `-- Installing font-misc-ethiopic-1.0.3_3... [120arm64-quarterly-job-06] | | `-- Extracting font-misc-ethiopic-1.0.3_3: ... done [120arm64-quarterly-job-06] | | `-- Installing font-misc-meltho-1.0.3_3... [120arm64-quarterly-job-06] | | `-- Extracting font-misc-meltho-1.0.3_3: .......... done [120arm64-quarterly-job-06] | `-- Extracting pango-1.42.4: .......... done [120arm64-quarterly-job-06] | `-- Installing tcl86-8.6.8... [120arm64-quarterly-job-06] | `-- Extracting tcl86-8.6.8: .......... done [120arm64-quarterly-job-06] | `-- Installing tk86-8.6.8_2... [120arm64-quarterly-job-06] | `-- Extracting tk86-8.6.8_2: .......... done [120arm64-quarterly-job-06] `-- Extracting R-3.5.1_1: .......... done [120arm64-quarterly-job-06] Extracting R-cran-Rcpp-0.12.18: .......... done Message from freetype2-2.9.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). Message from perl5-5.26.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from python27-2.7.15: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from ca_root_nss-3.41: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from gcc7-7.3.0_5: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc7 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from python36-3.6.6_1: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Message from trousers-0.3.14_2: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from libijs-0.35_5: ===> NOTICE: The libijs port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from ghostscript9-agpl-base-9.25_1: This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> R-cran-ModelMetrics-1.2.0 depends on package: R-cran-Rcpp>0 - found ===> Returning to build of R-cran-ModelMetrics-1.2.0 ===> R-cran-ModelMetrics-1.2.0 depends on package: R-cran-data.table>0 - not found ===> Installing existing package /packages/All/R-cran-data.table-1.11.6.txz [120arm64-quarterly-job-06] Installing R-cran-data.table-1.11.6... [120arm64-quarterly-job-06] Extracting R-cran-data.table-1.11.6: .......... done ===> R-cran-ModelMetrics-1.2.0 depends on package: R-cran-data.table>0 - found ===> Returning to build of R-cran-ModelMetrics-1.2.0 ===> R-cran-ModelMetrics-1.2.0 depends on file: /usr/local/bin/R - found ===> R-cran-ModelMetrics-1.2.0 depends on executable: gfortran7 - found ===> R-cran-ModelMetrics-1.2.0 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for R-cran-ModelMetrics-1.2.0 =========================================================================== =======================<phase: build >============================ =========================================================================== =======================<phase: run-depends >============================ ===> R-cran-ModelMetrics-1.2.0 depends on package: R-cran-Rcpp>0 - found ===> R-cran-ModelMetrics-1.2.0 depends on package: R-cran-data.table>0 - found ===> R-cran-ModelMetrics-1.2.0 depends on file: /usr/local/bin/R - found ===> R-cran-ModelMetrics-1.2.0 depends on executable: gfortran7 - found =========================================================================== =======================<phase: stage >============================ ===> Staging for R-cran-ModelMetrics-1.2.0 ===> Generating temporary packing list * installing *source* package 'ModelMetrics' ... ** package 'ModelMetrics' successfully unpacked and MD5 sums checked ** libs gmake[1]: Entering directory '/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work/ModelMetrics/src' c++ -I"/usr/local/lib/R/include" -DNDEBUG -I"/usr/local/lib/R/library/Rcpp/include" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c RcppExports.cpp -o RcppExports.o c++ -I"/usr/local/lib/R/include" -DNDEBUG -I"/usr/local/lib/R/library/Rcpp/include" -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -isystem /usr/local/include -fno-strict-aliasing -DLIBICONV_PLUG -isystem /usr/local/include -c auc_.cpp -o auc_.o auc_.cpp:2:10: fatal error: 'omp.h' file not found #include <omp.h> ^~~~~~~ 1 error generated. gmake[1]: *** [/usr/local/lib/R/etc/Makeconf:166: auc_.o] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work/ModelMetrics/src' ERROR: compilation failed for package 'ModelMetrics' * removing '/wrkdirs/usr/ports/devel/R-cran-ModelMetrics/work/stage/usr/local/lib/R/library/ModelMetrics' *** Error code 1 Stop. make: stopped in /usr/ports/devel/R-cran-ModelMetrics
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