From owner-svn-ports-head@freebsd.org Thu Dec 19 01:04:12 2019 Return-Path: Delivered-To: svn-ports-head@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 50EA91CB847; Thu, 19 Dec 2019 01:04:12 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 47dYYS1DkMz3yql; Thu, 19 Dec 2019 01:04:12 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 2597F6C14; Thu, 19 Dec 2019 01:04:12 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id xBJ14BeW025137; Thu, 19 Dec 2019 01:04:11 GMT (envelope-from jwb@FreeBSD.org) Received: (from jwb@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id xBJ14BPa025135; Thu, 19 Dec 2019 01:04:11 GMT (envelope-from jwb@FreeBSD.org) Message-Id: <201912190104.xBJ14BPa025135@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: jwb set sender to jwb@FreeBSD.org using -f From: "Jason W. Bacon" Date: Thu, 19 Dec 2019 01:04:11 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r520414 - head/biology/bedtools X-SVN-Group: ports-head X-SVN-Commit-Author: jwb X-SVN-Commit-Paths: head/biology/bedtools X-SVN-Commit-Revision: 520414 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 19 Dec 2019 01:04:12 -0000 Author: jwb Date: Thu Dec 19 01:04:11 2019 New Revision: 520414 URL: https://svnweb.freebsd.org/changeset/ports/520414 Log: biology/bedtools: Upgrade to 2.29.2 Fixed a bug that mistakenly removed a BAM/CRAM header line Reported by: portscout Modified: head/biology/bedtools/Makefile head/biology/bedtools/distinfo Modified: head/biology/bedtools/Makefile ============================================================================== --- head/biology/bedtools/Makefile Thu Dec 19 00:48:57 2019 (r520413) +++ head/biology/bedtools/Makefile Thu Dec 19 01:04:11 2019 (r520414) @@ -2,7 +2,7 @@ PORTNAME= bedtools DISTVERSIONPREFIX= v -DISTVERSION= 2.29.1 +DISTVERSION= 2.29.2 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org Modified: head/biology/bedtools/distinfo ============================================================================== --- head/biology/bedtools/distinfo Thu Dec 19 00:48:57 2019 (r520413) +++ head/biology/bedtools/distinfo Thu Dec 19 01:04:11 2019 (r520414) @@ -1,3 +1,3 @@ -TIMESTAMP = 1576008395 -SHA256 (arq5x-bedtools2-v2.29.1_GH0.tar.gz) = 504c0992caa027ec1840ea9ca6909f7e59e7ebc1a2b422233b35abb9592aff5c -SIZE (arq5x-bedtools2-v2.29.1_GH0.tar.gz) = 20639166 +TIMESTAMP = 1576701335 +SHA256 (arq5x-bedtools2-v2.29.2_GH0.tar.gz) = bc2f36b5d4fc9890c69f607d54da873032628462e88c545dd633d2c787a544a5 +SIZE (arq5x-bedtools2-v2.29.2_GH0.tar.gz) = 20638840