Date: Sat, 27 Apr 2019 20:19:54 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 120armv7-quarterly][math/py-gau2grid] Failed for py27-gau2grid-1.3.1 in build Message-ID: <201904272019.x3RKJsTA064516@beefy13.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: branches/2019Q2/math/py-gau2grid/Makefile 491311 2019-01-26 20:29:29Z yuri $ Log URL: http://beefy13.nyi.freebsd.org/data/120armv7-quarterly/500185/logs/py27-gau2grid-1.3.1.log Build URL: http://beefy13.nyi.freebsd.org/build.html?mastername=120armv7-quarterly&build=500185 Log: =>> Building math/py-gau2grid build started at Sat Apr 27 20:19:25 UTC 2019 port directory: /usr/ports/math/py-gau2grid package name: py27-gau2grid-1.3.1 building for: FreeBSD 120armv7-quarterly-job-04 12.0-RELEASE-p3 FreeBSD 12.0-RELEASE-p3 1200086 arm maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: branches/2019Q2/math/py-gau2grid/Makefile 491311 2019-01-26 20:29:29Z yuri $ Poudriere version: 3.2.8-3-g02cc9753 Host OSVERSION: 1300009 Jail OSVERSION: 1200086 Job Id: 04 ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv7 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1200086 UNAME_v=FreeBSD 12.0-RELEASE-p3 1200086 UNAME_r=12.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-3-g02cc9753 MASTERMNT=/usr/local/poudriere/data/.m/120armv7-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/120armv7-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=120armv7-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/120armv7-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py27 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py27 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py27 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py27 HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-gau2grid/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py27 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py27 HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py27 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-gau2grid/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/math/py-gau2grid/work-py27/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd12 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/gau2grid" EXAMPLESDIR="share/examples/gau2grid" DATADIR="share/gau2grid" WWWDIR="www/gau2grid" ETCDIR="etc/gau2grid" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gau2grid DOCSDIR=/usr/local/share/doc/gau2grid EXAMPLESDIR=/usr/local/share/examples/gau2grid WWWDIR=/usr/local/www/gau2grid ETCDIR=/usr/local/etc/gau2grid --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv7 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. 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[120armv7-quarterly-job-04] Extracting pkg-1.10.5_5: .......... done ===> py27-gau2grid-1.3.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-gau2grid-1.3.1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-gau2grid-1.3.1 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py27-gau2grid-1.3.1 for building => SHA256 Checksum OK for dgasmith-gau2grid-v1.3.1_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ <snip> [120armv7-quarterly-job-04] | `-- Extracting ca_root_nss-3.43: ........ done [120armv7-quarterly-job-04] | `-- Installing libnghttp2-1.37.0... [120armv7-quarterly-job-04] | `-- Extracting libnghttp2-1.37.0: .......... done [120armv7-quarterly-job-04] `-- Extracting curl-7.64.1_1: .......... done [120armv7-quarterly-job-04] `-- Installing expat-2.2.6_1... [120armv7-quarterly-job-04] `-- Extracting expat-2.2.6_1: .......... done [120armv7-quarterly-job-04] `-- Installing jsoncpp-1.8.1_6... [120armv7-quarterly-job-04] `-- Extracting jsoncpp-1.8.1_6: .......... done [120armv7-quarterly-job-04] `-- Installing libarchive-3.3.3,1... [120armv7-quarterly-job-04] | `-- Installing liblz4-1.8.3,1... [120armv7-quarterly-job-04] | `-- Extracting liblz4-1.8.3,1: .......... done [120armv7-quarterly-job-04] | `-- Installing lzo2-2.10_1... [120armv7-quarterly-job-04] | `-- Extracting lzo2-2.10_1: .......... done [120armv7-quarterly-job-04] `-- Extracting libarchive-3.3.3,1: .......... done [120armv7-quarterly-job-04] `-- Installing libuv-1.27.0... [120armv7-quarterly-job-04] `-- Extracting libuv-1.27.0: .......... done [120armv7-quarterly-job-04] `-- Installing rhash-1.3.5... [120armv7-quarterly-job-04] `-- Extracting rhash-1.3.5: .......... done [120armv7-quarterly-job-04] Extracting cmake-3.13.4: .......... done Message from ca_root_nss-3.43: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> py27-gau2grid-1.3.1 depends on executable: cmake - found ===> Returning to build of py27-gau2grid-1.3.1 ===> py27-gau2grid-1.3.1 depends on file: /usr/local/bin/cmake - found ===> py27-gau2grid-1.3.1 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.8.2_1,2.txz [120armv7-quarterly-job-04] Installing ninja-1.8.2_1,2... [120armv7-quarterly-job-04] Extracting ninja-1.8.2_1,2: ......... done ===> py27-gau2grid-1.3.1 depends on executable: ninja - found ===> Returning to build of py27-gau2grid-1.3.1 ===> py27-gau2grid-1.3.1 depends on file: /usr/local/bin/python2.7 - found =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for py27-gau2grid-1.3.1 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/math/py-gau2grid/work-py27/.build -- The C compiler identification is Clang 6.0.1 -- Check for working C compiler: /nxb-bin/usr/bin/cc -- Check for working C compiler: /nxb-bin/usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Setting (unspecified) option MAX_AM: 8 -- Setting (unspecified) option SPHERICAL_ORDER: gaussian -- Setting (unspecified) option CARTESIAN_ORDER: row -- Setting option MAX_AM: 8 -- Setting option CMAKE_BUILD_TYPE: Release -- Setting (unspecified) option ENABLE_XHOST: ON -- Performing Test CMAKE_C_FLAGS [-xHost] - Failed -- Performing Test CMAKE_C_FLAGS [-march=native] - Failed CMake Warning at cmake/psi4OptionsTools.cmake:94 (message): Option unfulfilled as none of -xHost;-march=native valid Call Stack (most recent call first): cmake/psi4OptionsTools.cmake:137 (add_C_or_CXX_flags) cmake/psi4OptionsTools.cmake:168 (add_C_flags) cmake/psi4OptionsTools.cmake:186 (add_flags) CMakeLists.txt:22 (option_with_flags) -- Setting (unspecified) option BUILD_FPIC: ON -- Setting (unspecified) option BUILD_SHARED_LIBS: ON -- Setting (unspecified) option ENABLE_GENERIC: OFF -- Setting (unspecified) option CMAKE_INSTALL_LIBDIR: lib -- Setting option PYMOD_INSTALL_LIBDIR: /usr/local/lib/python2.7/site-packages -- Setting option INSTALL_PYMOD: ON -- Setting (unspecified) option NATIVE_PYTHON_INSTALL: OFF -- gau2grid install: /usr/local -- Found PythonInterp: /usr/local/bin/python2.7 (found suitable version "2.7.16", minimum required is "2.7") -- Found PythonLibs: /usr/local/lib/libpython2.7.so -- [36mFound Python 2.7[m: /usr/local/bin/python2.7 (found version 2.7.16) Traceback (most recent call last): File "<string>", line 1, in <module> File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line 142, in <module> from . import core File "/usr/local/lib/python2.7/site-packages/numpy/core/__init__.py", line 47, in <module> raise ImportError(msg) ImportError: IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! Importing the multiarray numpy extension module failed. Most likely you are trying to import a failed build of numpy. Here is how to proceed: - If you're working with a numpy git repository, try `git clean -xdf` (removes all files not under version control) and rebuild numpy. - If you are simply trying to use the numpy version that you have installed: your installation is broken - please reinstall numpy. - If you have already reinstalled and that did not fix the problem, then: 1. Check that you are using the Python you expect (you're using /usr/local/bin/python2.7), and that you have no directories in your PATH or PYTHONPATH that can interfere with the Python and numpy versions you're trying to use. 2. If (1) looks fine, you can open a new issue at https://github.com/numpy/numpy/issues. Please include details on: - how you installed Python - how you installed numpy - your operating system - whether or not you have multiple versions of Python installed - if you built from source, your compiler versions and ideally a build log Note: this error has many possible causes, so please don't comment on an existing issue about this - open a new one instead. Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5" -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: BOOST_PYTHON_SUFFIX CMAKE_COLOR_MAKEFILE CMAKE_CXX_COMPILER CMAKE_CXX_FLAGS CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_DEBUG CMAKE_EXE_LINKER_FLAGS CMAKE_MODULE_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/usr/ports/math/py-gau2grid/work-py27/.build =========================================================================== =======================<phase: build >============================ ===> Building for py27-gau2grid-1.3.1 [1/9] cd /wrkdirs/usr/ports/math/py-gau2grid/work-py27/.build && /usr/local/bin/python2.7 -c "import sys; sys.path.append('/wrkdirs/usr/ports/math/py-gau2grid/work-py27/gau2grid-1.3.1'); import gau2grid as gg; gg.c_gen.generate_c_gau2grid(8, path='/wrkdirs/usr/ports/math/py-gau2grid/work-py27/.build', cartesian_order='row', spherical_order='gaussian')" FAILED: gau2grid.h gau2grid_orbital.c gau2grid_phi.c gau2grid_deriv1.c gau2grid_deriv2.c gau2grid_spherical.c gau2grid_helper.c cd /wrkdirs/usr/ports/math/py-gau2grid/work-py27/.build && /usr/local/bin/python2.7 -c "import sys; sys.path.append('/wrkdirs/usr/ports/math/py-gau2grid/work-py27/gau2grid-1.3.1'); import gau2grid as gg; gg.c_gen.generate_c_gau2grid(8, path='/wrkdirs/usr/ports/math/py-gau2grid/work-py27/.build', cartesian_order='row', spherical_order='gaussian')" Traceback (most recent call last): File "<string>", line 1, in <module> File "/wrkdirs/usr/ports/math/py-gau2grid/work-py27/gau2grid-1.3.1/gau2grid/__init__.py", line 5, in <module> from . import RSH File "/wrkdirs/usr/ports/math/py-gau2grid/work-py27/gau2grid-1.3.1/gau2grid/RSH.py", line 10, in <module> import numpy as np File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line 142, in <module> from . import core File "/usr/local/lib/python2.7/site-packages/numpy/core/__init__.py", line 47, in <module> raise ImportError(msg) ImportError: IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! Importing the multiarray numpy extension module failed. Most likely you are trying to import a failed build of numpy. Here is how to proceed: - If you're working with a numpy git repository, try `git clean -xdf` (removes all files not under version control) and rebuild numpy. - If you are simply trying to use the numpy version that you have installed: your installation is broken - please reinstall numpy. - If you have already reinstalled and that did not fix the problem, then: 1. Check that you are using the Python you expect (you're using /usr/local/bin/python2.7), and that you have no directories in your PATH or PYTHONPATH that can interfere with the Python and numpy versions you're trying to use. 2. If (1) looks fine, you can open a new issue at https://github.com/numpy/numpy/issues. Please include details on: - how you installed Python - how you installed numpy - your operating system - whether or not you have multiple versions of Python installed - if you built from source, your compiler versions and ideally a build log Note: this error has many possible causes, so please don't comment on an existing issue about this - open a new one instead. Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5" ninja: build stopped: subcommand failed. *** Error code 1 Stop. make: stopped in /usr/ports/math/py-gau2grid
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