From owner-svn-ports-all@FreeBSD.ORG Thu May 7 02:33:59 2015 Return-Path: Delivered-To: svn-ports-all@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id F2152D66; Thu, 7 May 2015 02:33:58 +0000 (UTC) Received: from svn.freebsd.org (svn.freebsd.org [IPv6:2001:1900:2254:2068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id C762A126C; Thu, 7 May 2015 02:33:58 +0000 (UTC) Received: from svn.freebsd.org ([127.0.1.70]) by svn.freebsd.org (8.14.9/8.14.9) with ESMTP id t472XwsS003287; Thu, 7 May 2015 02:33:58 GMT (envelope-from wen@FreeBSD.org) Received: (from wen@localhost) by svn.freebsd.org (8.14.9/8.14.9/Submit) id t472Xw7M003283; Thu, 7 May 2015 02:33:58 GMT (envelope-from wen@FreeBSD.org) Message-Id: <201505070233.t472Xw7M003283@svn.freebsd.org> X-Authentication-Warning: svn.freebsd.org: wen set sender to wen@FreeBSD.org using -f From: Wen Heping Date: Thu, 7 May 2015 02:33:58 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r385592 - head/biology/fasta3 X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.20 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 07 May 2015 02:33:59 -0000 Author: wen Date: Thu May 7 02:33:57 2015 New Revision: 385592 URL: https://svnweb.freebsd.org/changeset/ports/385592 Log: - Update to 36.3.7a Modified: head/biology/fasta3/Makefile head/biology/fasta3/distinfo head/biology/fasta3/pkg-plist Modified: head/biology/fasta3/Makefile ============================================================================== --- head/biology/fasta3/Makefile Thu May 7 02:06:02 2015 (r385591) +++ head/biology/fasta3/Makefile Thu May 7 02:33:57 2015 (r385592) @@ -2,8 +2,7 @@ # $FreeBSD$ PORTNAME= fasta3 -PORTVERSION= 36.3.6d -PORTREVISION= 1 +PORTVERSION= 36.3.7a CATEGORIES= biology MASTER_SITES= http://faculty.virginia.edu/wrpearson/fasta/fasta36/ DISTNAME= fasta-${PORTVERSION} @@ -45,6 +44,7 @@ EXAMPLES= seq/*.aa seq/*.lc seq/*.seq se post-patch: @${CP} ${WRKSRC}/make/${MAKEFILE} ${BUILD_WRKSRC} + @${RM} ${WRKSRC}/bin/README post-install: (cd ${WRKSRC}/bin && ${INSTALL_PROGRAM} * ${STAGEDIR}${PREFIX}/bin) Modified: head/biology/fasta3/distinfo ============================================================================== --- head/biology/fasta3/distinfo Thu May 7 02:06:02 2015 (r385591) +++ head/biology/fasta3/distinfo Thu May 7 02:33:57 2015 (r385592) @@ -1,2 +1,2 @@ -SHA256 (fasta3/2014-01-29/fasta-36.3.6d.tar.gz) = cab2f530c8d0ebb59ac5e82580d56da14c4c86fcf0a76edb72eeb18c42a79eb6 -SIZE (fasta3/2014-01-29/fasta-36.3.6d.tar.gz) = 969973 +SHA256 (fasta3/2014-01-29/fasta-36.3.7a.tar.gz) = 69d1b8017bb3e4225552686709016405e8f78a3fdf836522c4e57c726f2af87b +SIZE (fasta3/2014-01-29/fasta-36.3.7a.tar.gz) = 1161409 Modified: head/biology/fasta3/pkg-plist ============================================================================== --- head/biology/fasta3/pkg-plist Thu May 7 02:06:02 2015 (r385591) +++ head/biology/fasta3/pkg-plist Thu May 7 02:33:57 2015 (r385592) @@ -7,8 +7,6 @@ bin/fasty%%VER%% bin/ggsearch%%VER%% bin/glsearch%%VER%% bin/lalign%%VER%% -bin/lav2ps -bin/lav2svg bin/map_db bin/ssearch%%VER%% bin/tfastf%%VER%% @@ -118,3 +116,10 @@ man/man1/tfasty35.1.gz %%DATADIR%%/pam250.mat %%DATADIR%%/rna.mat %%DATADIR%%/vtml160.mat +%%DATADIR%%/VTML_10.mat +%%DATADIR%%/VTML_120.mat +%%DATADIR%%/VTML_160.mat +%%DATADIR%%/VTML_20.mat +%%DATADIR%%/VTML_200.mat +%%DATADIR%%/VTML_40.mat +%%DATADIR%%/VTML_80.mat