Date: Wed, 22 Feb 2006 06:19:36 GMT From: "Choe, Cheng-Dae" <whitekid@gmail.com> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/93693: [New Port] biology/io_lib: trace file read/write interface Message-ID: <200602220619.k1M6Janm006048@www.freebsd.org> Resent-Message-ID: <200602220620.k1M6K4t0078365@freefall.freebsd.org>
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>Number: 93693
>Category: ports
>Synopsis: [New Port] biology/io_lib: trace file read/write interface
>Confidential: no
>Severity: non-critical
>Priority: low
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: change-request
>Submitter-Id: current-users
>Arrival-Date: Wed Feb 22 06:20:04 GMT 2006
>Closed-Date:
>Last-Modified:
>Originator: "Choe, Cheng-Dae"
>Release: FreeBSD 6.1-PRERELEASE i386
>Organization:
>Environment:
System: FreeBSD w.comdongin.com 6.1-PRERELEASE FreeBSD 6.1-PRERELEASE #0: Mon Feb 6 15:06:48 KST 2006 root@w.comdongin.com:/data/src/sys/i386/compile/CDI i386
>Description:
Io_lib is a library of file reading and writing code to provide a general
purpose trace file (and Experiment File) reading interface.
>How-To-Repeat:
N/A
>Fix:
# This is a shell archive. Save it in a file, remove anything before
# this line, and then unpack it by entering "sh file". Note, it may
# create directories; files and directories will be owned by you and
# have default permissions.
#
# This archive contains:
#
# io_lib
# io_lib/pkg-descr
# io_lib/Makefile
# io_lib/pkg-plist
# io_lib/distinfo
# io_lib/files
# io_lib/files/patch-utils_os.h
#
echo c - io_lib
mkdir -p io_lib > /dev/null 2>&1
echo x - io_lib/pkg-descr
sed 's/^X//' >io_lib/pkg-descr << 'END-of-io_lib/pkg-descr'
XIo_lib is a library of file reading and writing code to provide a general
Xpurpose trace file (and Experiment File) reading interface. The programmer
Xsimply calls the (eg) read_reading to create a "Read" C structure with the
Xdata loaded into memory.
X
XWWW: http://staden.sourceforge.net/
END-of-io_lib/pkg-descr
echo x - io_lib/Makefile
sed 's/^X//' >io_lib/Makefile << 'END-of-io_lib/Makefile'
X# New ports collection makefile for: io_lib
X# Date created: 2006-02-22
X# Whom: Choe, Cheng-Dae
X#
X# $FreeBSD$
X#
X
XPORTNAME= io_lib
XPORTVERSION= 1.9.2
XCATEGORIES= biology
XMASTER_SITES= ${MASTER_SITE_SOURCEFORGE}
XMASTER_SITE_SUBDIR= staden
XDISTNAME= ${PORTNAME}-${PORTVERSION}
X
XMAINTAINER= whitekid@gmail.com
XCOMMENT= sequence trace file read/write interface library
X
XGNU_CONFIGURE= yes
XCONFIGURE_ARGS= --prefix=${PREFIX}
X
XMAN3= exp2read.3 ExperimentFile.3 fread_reading.3 fread_scf.3 \
X fwrite_reading.3 fwrite_scf.3 read2exp.3 read2scf.3 read_allocate.3 \
X read_deallocate.3 read_reading.3 read_scf.3 read_scf_header.3 \
X scf2read.3 write_reading.3 write_scf.3 write_scf_header.3
XMAN4= Read.4
X
XINSTALLS_SHLIB= yes
X
X.include <bsd.port.mk>
END-of-io_lib/Makefile
echo x - io_lib/pkg-plist
sed 's/^X//' >io_lib/pkg-plist << 'END-of-io_lib/pkg-plist'
X@comment $FreeBSD$
Xbin/convert_trace
Xbin/makeSCF
Xbin/extract_seq
Xbin/index_tar
Xbin/scf_dump
Xbin/scf_info
Xbin/scf_update
Xbin/get_comment
Xbin/hash_tar
Xbin/hash_extract
Xbin/trace_dump
Xbin/hash_sff
Xbin/append_sff
Xinclude/io_lib/Read.h
Xinclude/io_lib/scf_extras.h
Xinclude/io_lib/translate.h
Xinclude/io_lib/abi.h
Xinclude/io_lib/fpoint.h
Xinclude/io_lib/seqIOABI.h
Xinclude/io_lib/alf.h
Xinclude/io_lib/seqIOCTF.h
Xinclude/io_lib/expFileIO.h
Xinclude/io_lib/plain.h
Xinclude/io_lib/scf.h
Xinclude/io_lib/sff.h
Xinclude/io_lib/array.h
Xinclude/io_lib/compress.h
Xinclude/io_lib/error.h
Xinclude/io_lib/mach-io.h
Xinclude/io_lib/misc.h
Xinclude/io_lib/open_trace_file.h
Xinclude/io_lib/tar_format.h
Xinclude/io_lib/traceType.h
Xinclude/io_lib/xalloc.h
Xinclude/io_lib/mFILE.h
Xinclude/io_lib/stdio_hack.h
Xinclude/io_lib/vlen.h
Xinclude/io_lib/hash_table.h
Xinclude/io_lib/os.h
Xinclude/io_lib/compression.h
Xinclude/io_lib/ztr.h
Xinclude/io_lib/io_lib_config.h
Xlib/libread.a
X@dirrm include/io_lib
END-of-io_lib/pkg-plist
echo x - io_lib/distinfo
sed 's/^X//' >io_lib/distinfo << 'END-of-io_lib/distinfo'
XMD5 (io_lib-1.9.2.tar.gz) = 4bef7c198de08e2dc882ba34043de02c
XSIZE (io_lib-1.9.2.tar.gz) = 241553
END-of-io_lib/distinfo
echo c - io_lib/files
mkdir -p io_lib/files > /dev/null 2>&1
echo x - io_lib/files/patch-utils_os.h
sed 's/^X//' >io_lib/files/patch-utils_os.h << 'END-of-io_lib/files/patch-utils_os.h'
X
X$FreeBSD$
X
X--- utils/os.h.orig
X+++ utils/os.h
X@@ -125,6 +125,16 @@
X #endif
X
X /*
X+ * FreeBSD on Intel platforms
X+ */
X+#if defined(__FreeBSD__)
X+# if defined(SP_BIG_ENDIAN)
X+# undef SP_BIG_ENDIAN
X+# endif
X+# define SP_LITTLE_ENDIAN
X+#endif
X+
X+/*
X * Linux on AMD64 also needs to use va_copy()
X */
X #if defined(__linux__) && defined(__amd64__)
END-of-io_lib/files/patch-utils_os.h
exit
>Release-Note:
>Audit-Trail:
>Unformatted:
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