Date: Thu, 3 Nov 2016 13:55:58 +0000 (UTC) From: Joseph Mingrone <jrm@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r425213 - head/math/R Message-ID: <201611031355.uA3DtwAu092458@repo.freebsd.org>
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Author: jrm Date: Thu Nov 3 13:55:58 2016 New Revision: 425213 URL: https://svnweb.freebsd.org/changeset/ports/425213 Log: math/R: Revert documentation changes and bump PORTREVISION In an attempt to simplify the handling of documentation for users, changes were made in the last commit. When the documentation knob was off, (almost) no HTML, PDF, etc. files or their sources were installed, and when the knob was on, all these files were installed. Because some of these documentation files depended on some very large TeX ports, despite the usual convention, the knob was turned off by default. Unfortunately, this caused problems for a few R-dependent ports, because they copy documentation files from math/R when they are installed. Reported by: antoine Reviewed by: mat Approved by: swills (mentor) Differential Revision: https://reviews.freebsd.org/D8429 Modified: head/math/R/Makefile head/math/R/pkg-plist Modified: head/math/R/Makefile ============================================================================== --- head/math/R/Makefile Thu Nov 3 13:44:50 2016 (r425212) +++ head/math/R/Makefile Thu Nov 3 13:55:58 2016 (r425213) @@ -3,7 +3,7 @@ PORTNAME= R PORTVERSION= 3.3.2 -PORTREVISION= 1 +PORTREVISION= 2 CATEGORIES= math lang MASTER_SITES= CRAN/src/base/R-${PORTVERSION:C|\..*||} @@ -29,7 +29,7 @@ USE_PERL5= build OPTIONS_DEFINE= ICU INFO LDOUBLE LETTER LIBR MEMPROF NLS RPROF X11 OPTIONS_GROUP= NEEDGCC NEEDX11 OPTIONS_GROUP_NEEDGCC= LTO OPENMP -OPTIONS_GROUP_NEEDX11= ALLDOCS GHOSTSCRIPT JPEG CAIROPANGO PNG TCLTK TIFF +OPTIONS_GROUP_NEEDX11= DOCS GHOSTSCRIPT JPEG CAIROPANGO PNG TCLTK TIFF OPTIONS_SINGLE= BLAS OPTIONS_SINGLE_BLAS= ATLAS OPENBLAS NETLIB RBLAS @@ -38,7 +38,7 @@ OPTIONS_SUB= YES ATLAS_DESC= ATLAS BLAS implementation GHOSTSCRIPT_DESC= Graphics device for bitmap files via Ghostscript CAIROPANGO_DESC= Cairo graphics device and Pango multi-language text -ALLDOCS_DESC= All documentation (TeX build dependency) +DOCS_DESC= All documentation (TeX build dependency) INFO_DESC= GNU info manuals JPEG_DESC= JPEG graphics device LDOUBLE_DESC= Long double data type @@ -58,12 +58,12 @@ X11_DESC= X11 graphics device OPTIONS_DEFAULT= CAIROPANGO GHOSTSCRIPT ICU INFO JPEG LDOUBLE LIBR PNG \ RBLAS RPROF TCLTK TIFF X11 -ALLDOCS_BUILD_DEPENDS= texi2any:print/texinfo +DOCS_BUILD_DEPENDS= texi2any:print/texinfo .for i in KPSEWHICH MAKEINDEX PDFLATEX PDFTEX TEX TEXI2DVI -ALLDOCS_CONFIGURE_ENV_OFF+= ac_cv_path_${i}="" +DOCS_CONFIGURE_ENV_OFF+= ac_cv_path_${i}="" .endfor -ALLDOCS_INSTALL_TARGET= install-pdf -ALLDOCS_USE= tex=dvipsk:build,kpathsea:build,pdftex:build +DOCS_INSTALL_TARGET= install-pdf +DOCS_USE= tex=dvipsk:build,kpathsea:build,pdftex:build ATLAS_USES= blaslapack:atlas ATLAS_CONFIGURE_ON= --disable-BLAS-shlib ATLAS_VARS= MANUAL_PACKAGE_BUILD=\ @@ -144,11 +144,4 @@ post-install: fi .endfor -post-install-ALLDOCS-off: - [ -n "${DOCSDIR}" ] && \ - ${RM} -r ${STAGEDIR}${DOCSDIR}/html && \ - ${RM} -r ${STAGEDIR}${DOCSDIR}/manual; \ - ${FIND} ${STAGEDIR}${PREFIX}/lib/R/library -type d \ - \( -name html -or -name doc -or -name help \) -delete; - .include <bsd.port.mk> Modified: head/math/R/pkg-plist ============================================================================== --- head/math/R/pkg-plist Thu Nov 3 13:44:50 2016 (r425212) +++ head/math/R/pkg-plist Thu Nov 3 13:55:58 2016 (r425213) @@ -8,21 +8,21 @@ %%DOCSDIR%%/NEWS.rds %%DOCSDIR%%/RESOURCES %%DOCSDIR%%/THANKS -%%ALLDOCS%%%%DOCSDIR%%/html/NEWS.html -%%ALLDOCS%%%%DOCSDIR%%/html/NEWS.2.html -%%ALLDOCS%%%%DOCSDIR%%/html/R.css -%%ALLDOCS%%%%DOCSDIR%%/html/SearchOn.html -%%ALLDOCS%%%%DOCSDIR%%/html/Search.html -%%ALLDOCS%%%%DOCSDIR%%/html/about.html -%%ALLDOCS%%%%DOCSDIR%%/html/favicon.ico -%%ALLDOCS%%%%DOCSDIR%%/html/index.html -%%ALLDOCS%%%%DOCSDIR%%/html/left.jpg -%%ALLDOCS%%%%DOCSDIR%%/html/logo.jpg -%%ALLDOCS%%%%DOCSDIR%%/html/packages-head-utf8.html -%%ALLDOCS%%%%DOCSDIR%%/html/packages.html -%%ALLDOCS%%%%DOCSDIR%%/html/resources.html -%%ALLDOCS%%%%DOCSDIR%%/html/right.jpg -%%ALLDOCS%%%%DOCSDIR%%/html/up.jpg +%%DOCSDIR%%/html/NEWS.html +%%DOCSDIR%%/html/NEWS.2.html +%%DOCSDIR%%/html/R.css +%%DOCSDIR%%/html/SearchOn.html +%%DOCSDIR%%/html/Search.html +%%DOCSDIR%%/html/about.html +%%DOCSDIR%%/html/favicon.ico +%%DOCSDIR%%/html/index.html +%%DOCSDIR%%/html/left.jpg +%%DOCSDIR%%/html/logo.jpg +%%DOCSDIR%%/html/packages-head-utf8.html +%%DOCSDIR%%/html/packages.html +%%DOCSDIR%%/html/resources.html +%%DOCSDIR%%/html/right.jpg +%%DOCSDIR%%/html/up.jpg bin/R bin/Rscript lib/R/COPYING @@ -117,13 +117,13 @@ lib/R/library/KernSmooth/NAMESPACE lib/R/library/KernSmooth/R/KernSmooth lib/R/library/KernSmooth/R/KernSmooth.rdb lib/R/library/KernSmooth/R/KernSmooth.rdx -%%ALLDOCS%%lib/R/library/KernSmooth/help/AnIndex -%%ALLDOCS%%lib/R/library/KernSmooth/help/KernSmooth.rdb -%%ALLDOCS%%lib/R/library/KernSmooth/help/KernSmooth.rdx -%%ALLDOCS%%lib/R/library/KernSmooth/help/aliases.rds -%%ALLDOCS%%lib/R/library/KernSmooth/help/paths.rds -%%ALLDOCS%%lib/R/library/KernSmooth/html/00Index.html -%%ALLDOCS%%lib/R/library/KernSmooth/html/R.css +lib/R/library/KernSmooth/help/AnIndex +lib/R/library/KernSmooth/help/KernSmooth.rdb +lib/R/library/KernSmooth/help/KernSmooth.rdx +lib/R/library/KernSmooth/help/aliases.rds +lib/R/library/KernSmooth/help/paths.rds +lib/R/library/KernSmooth/html/00Index.html +lib/R/library/KernSmooth/html/R.css lib/R/library/KernSmooth/libs/KernSmooth.so %%NLS%%lib/R/library/KernSmooth/po/de/LC_MESSAGES/R-KernSmooth.mo %%NLS%%lib/R/library/KernSmooth/po/en@quot/LC_MESSAGES/R-KernSmooth.mo @@ -147,13 +147,13 @@ lib/R/library/MASS/R/MASS.rdx lib/R/library/MASS/data/Rdata.rdb lib/R/library/MASS/data/Rdata.rds lib/R/library/MASS/data/Rdata.rdx -%%ALLDOCS%%lib/R/library/MASS/help/AnIndex -%%ALLDOCS%%lib/R/library/MASS/help/MASS.rdb -%%ALLDOCS%%lib/R/library/MASS/help/MASS.rdx -%%ALLDOCS%%lib/R/library/MASS/help/aliases.rds -%%ALLDOCS%%lib/R/library/MASS/help/paths.rds -%%ALLDOCS%%lib/R/library/MASS/html/00Index.html -%%ALLDOCS%%lib/R/library/MASS/html/R.css +lib/R/library/MASS/help/AnIndex +lib/R/library/MASS/help/MASS.rdb +lib/R/library/MASS/help/MASS.rdx +lib/R/library/MASS/help/aliases.rds +lib/R/library/MASS/help/paths.rds +lib/R/library/MASS/html/00Index.html +lib/R/library/MASS/html/R.css lib/R/library/MASS/libs/MASS.so %%NLS%%lib/R/library/MASS/po/de/LC_MESSAGES/R-MASS.mo %%NLS%%lib/R/library/MASS/po/en@quot/LC_MESSAGES/R-MASS.mo @@ -196,29 +196,29 @@ lib/R/library/Matrix/R/Matrix.rdx lib/R/library/Matrix/data/CAex.R lib/R/library/Matrix/data/KNex.R lib/R/library/Matrix/data/USCounties.R -%%ALLDOCS%%lib/R/library/Matrix/doc/Announce.txt -%%ALLDOCS%%lib/R/library/Matrix/doc/Comparisons.R -%%ALLDOCS%%lib/R/library/Matrix/doc/Comparisons.Rnw -%%ALLDOCS%%lib/R/library/Matrix/doc/Comparisons.pdf -%%ALLDOCS%%lib/R/library/Matrix/doc/Design-issues.R -%%ALLDOCS%%lib/R/library/Matrix/doc/Design-issues.Rnw -%%ALLDOCS%%lib/R/library/Matrix/doc/Design-issues.pdf -%%ALLDOCS%%lib/R/library/Matrix/doc/Intro2Matrix.R -%%ALLDOCS%%lib/R/library/Matrix/doc/Intro2Matrix.Rnw -%%ALLDOCS%%lib/R/library/Matrix/doc/Intro2Matrix.pdf -%%ALLDOCS%%lib/R/library/Matrix/doc/Introduction.R -%%ALLDOCS%%lib/R/library/Matrix/doc/Introduction.Rnw -%%ALLDOCS%%lib/R/library/Matrix/doc/Introduction.pdf -%%ALLDOCS%%lib/R/library/Matrix/doc/SuiteSparse/AMD.txt -%%ALLDOCS%%lib/R/library/Matrix/doc/SuiteSparse/CHOLMOD.txt -%%ALLDOCS%%lib/R/library/Matrix/doc/SuiteSparse/COLAMD.txt -%%ALLDOCS%%lib/R/library/Matrix/doc/SuiteSparse/SPQR.txt -%%ALLDOCS%%lib/R/library/Matrix/doc/SuiteSparse/SuiteSparse_config.txt -%%ALLDOCS%%lib/R/library/Matrix/doc/SuiteSparse/UserGuides.txt -%%ALLDOCS%%lib/R/library/Matrix/doc/index.html -%%ALLDOCS%%lib/R/library/Matrix/doc/sparseModels.R -%%ALLDOCS%%lib/R/library/Matrix/doc/sparseModels.Rnw -%%ALLDOCS%%lib/R/library/Matrix/doc/sparseModels.pdf +lib/R/library/Matrix/doc/Announce.txt +lib/R/library/Matrix/doc/Comparisons.R +lib/R/library/Matrix/doc/Comparisons.Rnw +lib/R/library/Matrix/doc/Comparisons.pdf +lib/R/library/Matrix/doc/Design-issues.R +lib/R/library/Matrix/doc/Design-issues.Rnw +lib/R/library/Matrix/doc/Design-issues.pdf +lib/R/library/Matrix/doc/Intro2Matrix.R +lib/R/library/Matrix/doc/Intro2Matrix.Rnw +lib/R/library/Matrix/doc/Intro2Matrix.pdf +lib/R/library/Matrix/doc/Introduction.R +lib/R/library/Matrix/doc/Introduction.Rnw +lib/R/library/Matrix/doc/Introduction.pdf +lib/R/library/Matrix/doc/SuiteSparse/AMD.txt +lib/R/library/Matrix/doc/SuiteSparse/CHOLMOD.txt +lib/R/library/Matrix/doc/SuiteSparse/COLAMD.txt +lib/R/library/Matrix/doc/SuiteSparse/SPQR.txt +lib/R/library/Matrix/doc/SuiteSparse/SuiteSparse_config.txt +lib/R/library/Matrix/doc/SuiteSparse/UserGuides.txt +lib/R/library/Matrix/doc/index.html +lib/R/library/Matrix/doc/sparseModels.R +lib/R/library/Matrix/doc/sparseModels.Rnw +lib/R/library/Matrix/doc/sparseModels.pdf lib/R/library/Matrix/external/CAex_slots.rda lib/R/library/Matrix/external/KNex_slots.rda lib/R/library/Matrix/external/USCounties_slots.rda @@ -230,13 +230,13 @@ lib/R/library/Matrix/external/symW.rda lib/R/library/Matrix/external/test3comp.rda lib/R/library/Matrix/external/utm300.rua lib/R/library/Matrix/external/wrong.mtx -%%ALLDOCS%%lib/R/library/Matrix/help/AnIndex -%%ALLDOCS%%lib/R/library/Matrix/help/Matrix.rdb -%%ALLDOCS%%lib/R/library/Matrix/help/Matrix.rdx -%%ALLDOCS%%lib/R/library/Matrix/help/aliases.rds -%%ALLDOCS%%lib/R/library/Matrix/help/paths.rds -%%ALLDOCS%%lib/R/library/Matrix/html/00Index.html -%%ALLDOCS%%lib/R/library/Matrix/html/R.css +lib/R/library/Matrix/help/AnIndex +lib/R/library/Matrix/help/Matrix.rdb +lib/R/library/Matrix/help/Matrix.rdx +lib/R/library/Matrix/help/aliases.rds +lib/R/library/Matrix/help/paths.rds +lib/R/library/Matrix/html/00Index.html +lib/R/library/Matrix/html/R.css lib/R/library/Matrix/include/Matrix.h lib/R/library/Matrix/include/Matrix_stubs.c lib/R/library/Matrix/include/cholmod.h @@ -269,13 +269,13 @@ lib/R/library/base/demo/error.catching.R lib/R/library/base/demo/is.things.R lib/R/library/base/demo/recursion.R lib/R/library/base/demo/scoping.R -%%ALLDOCS%%lib/R/library/base/help/AnIndex -%%ALLDOCS%%lib/R/library/base/help/aliases.rds -%%ALLDOCS%%lib/R/library/base/help/base.rdb -%%ALLDOCS%%lib/R/library/base/help/base.rdx -%%ALLDOCS%%lib/R/library/base/help/paths.rds -%%ALLDOCS%%lib/R/library/base/html/00Index.html -%%ALLDOCS%%lib/R/library/base/html/R.css +lib/R/library/base/help/AnIndex +lib/R/library/base/help/aliases.rds +lib/R/library/base/help/base.rdb +lib/R/library/base/help/base.rdx +lib/R/library/base/help/paths.rds +lib/R/library/base/html/00Index.html +lib/R/library/base/html/R.css lib/R/library/boot/CITATION lib/R/library/boot/DESCRIPTION lib/R/library/boot/INDEX @@ -293,13 +293,13 @@ lib/R/library/boot/data/Rdata.rdb lib/R/library/boot/data/Rdata.rds lib/R/library/boot/data/Rdata.rdx lib/R/library/boot/bd.q -%%ALLDOCS%%lib/R/library/boot/help/AnIndex -%%ALLDOCS%%lib/R/library/boot/help/aliases.rds -%%ALLDOCS%%lib/R/library/boot/help/boot.rdb -%%ALLDOCS%%lib/R/library/boot/help/boot.rdx -%%ALLDOCS%%lib/R/library/boot/help/paths.rds -%%ALLDOCS%%lib/R/library/boot/html/00Index.html -%%ALLDOCS%%lib/R/library/boot/html/R.css +lib/R/library/boot/help/AnIndex +lib/R/library/boot/help/aliases.rds +lib/R/library/boot/help/boot.rdb +lib/R/library/boot/help/boot.rdx +lib/R/library/boot/help/paths.rds +lib/R/library/boot/html/00Index.html +lib/R/library/boot/html/R.css %%NLS%%lib/R/library/boot/po/de/LC_MESSAGES/R-boot.mo %%NLS%%lib/R/library/boot/po/en@quot/LC_MESSAGES/R-boot.mo %%NLS%%lib/R/library/boot/po/fr/LC_MESSAGES/R-boot.mo @@ -319,13 +319,13 @@ lib/R/library/class/NEWS lib/R/library/class/R/class lib/R/library/class/R/class.rdb lib/R/library/class/R/class.rdx -%%ALLDOCS%%lib/R/library/class/help/AnIndex -%%ALLDOCS%%lib/R/library/class/help/aliases.rds -%%ALLDOCS%%lib/R/library/class/help/class.rdb -%%ALLDOCS%%lib/R/library/class/help/class.rdx -%%ALLDOCS%%lib/R/library/class/help/paths.rds -%%ALLDOCS%%lib/R/library/class/html/00Index.html -%%ALLDOCS%%lib/R/library/class/html/R.css +lib/R/library/class/help/AnIndex +lib/R/library/class/help/aliases.rds +lib/R/library/class/help/class.rdb +lib/R/library/class/help/class.rdx +lib/R/library/class/help/paths.rds +lib/R/library/class/html/00Index.html +lib/R/library/class/html/R.css lib/R/library/class/libs/class.so %%NLS%%lib/R/library/class/po/de/LC_MESSAGES/R-class.mo %%NLS%%lib/R/library/class/po/en@quot/LC_MESSAGES/R-class.mo @@ -349,13 +349,13 @@ lib/R/library/cluster/R/cluster.rdx lib/R/library/cluster/data/Rdata.rdb lib/R/library/cluster/data/Rdata.rds lib/R/library/cluster/data/Rdata.rdx -%%ALLDOCS%%lib/R/library/cluster/help/AnIndex -%%ALLDOCS%%lib/R/library/cluster/help/aliases.rds -%%ALLDOCS%%lib/R/library/cluster/help/cluster.rdb -%%ALLDOCS%%lib/R/library/cluster/help/cluster.rdx -%%ALLDOCS%%lib/R/library/cluster/help/paths.rds -%%ALLDOCS%%lib/R/library/cluster/html/00Index.html -%%ALLDOCS%%lib/R/library/cluster/html/R.css +lib/R/library/cluster/help/AnIndex +lib/R/library/cluster/help/aliases.rds +lib/R/library/cluster/help/cluster.rdb +lib/R/library/cluster/help/cluster.rdx +lib/R/library/cluster/help/paths.rds +lib/R/library/cluster/html/00Index.html +lib/R/library/cluster/html/R.css lib/R/library/cluster/libs/cluster.so %%NLS%%lib/R/library/cluster/po/de/LC_MESSAGES/R-cluster.mo %%NLS%%lib/R/library/cluster/po/de/LC_MESSAGES/cluster.mo @@ -376,13 +376,13 @@ lib/R/library/codetools/NAMESPACE lib/R/library/codetools/R/codetools lib/R/library/codetools/R/codetools.rdb lib/R/library/codetools/R/codetools.rdx -%%ALLDOCS%%lib/R/library/codetools/help/AnIndex -%%ALLDOCS%%lib/R/library/codetools/help/aliases.rds -%%ALLDOCS%%lib/R/library/codetools/help/codetools.rdb -%%ALLDOCS%%lib/R/library/codetools/help/codetools.rdx -%%ALLDOCS%%lib/R/library/codetools/help/paths.rds -%%ALLDOCS%%lib/R/library/codetools/html/00Index.html -%%ALLDOCS%%lib/R/library/codetools/html/R.css +lib/R/library/codetools/help/AnIndex +lib/R/library/codetools/help/aliases.rds +lib/R/library/codetools/help/codetools.rdb +lib/R/library/codetools/help/codetools.rdx +lib/R/library/codetools/help/paths.rds +lib/R/library/codetools/html/00Index.html +lib/R/library/codetools/html/R.css lib/R/library/compiler/DESCRIPTION lib/R/library/compiler/INDEX lib/R/library/compiler/Meta/Rd.rds @@ -394,13 +394,13 @@ lib/R/library/compiler/NAMESPACE lib/R/library/compiler/R/compiler lib/R/library/compiler/R/compiler.rdb lib/R/library/compiler/R/compiler.rdx -%%ALLDOCS%%lib/R/library/compiler/help/AnIndex -%%ALLDOCS%%lib/R/library/compiler/help/aliases.rds -%%ALLDOCS%%lib/R/library/compiler/help/compiler.rdb -%%ALLDOCS%%lib/R/library/compiler/help/compiler.rdx -%%ALLDOCS%%lib/R/library/compiler/help/paths.rds -%%ALLDOCS%%lib/R/library/compiler/html/00Index.html -%%ALLDOCS%%lib/R/library/compiler/html/R.css +lib/R/library/compiler/help/AnIndex +lib/R/library/compiler/help/aliases.rds +lib/R/library/compiler/help/compiler.rdb +lib/R/library/compiler/help/compiler.rdx +lib/R/library/compiler/help/paths.rds +lib/R/library/compiler/html/00Index.html +lib/R/library/compiler/html/R.css lib/R/library/datasets/DESCRIPTION lib/R/library/datasets/INDEX lib/R/library/datasets/Meta/Rd.rds @@ -414,13 +414,13 @@ lib/R/library/datasets/data/Rdata.rdb lib/R/library/datasets/data/Rdata.rds lib/R/library/datasets/data/Rdata.rdx lib/R/library/datasets/data/morley.tab -%%ALLDOCS%%lib/R/library/datasets/help/AnIndex -%%ALLDOCS%%lib/R/library/datasets/help/aliases.rds -%%ALLDOCS%%lib/R/library/datasets/help/datasets.rdb -%%ALLDOCS%%lib/R/library/datasets/help/datasets.rdx -%%ALLDOCS%%lib/R/library/datasets/help/paths.rds -%%ALLDOCS%%lib/R/library/datasets/html/00Index.html -%%ALLDOCS%%lib/R/library/datasets/html/R.css +lib/R/library/datasets/help/AnIndex +lib/R/library/datasets/help/aliases.rds +lib/R/library/datasets/help/datasets.rdb +lib/R/library/datasets/help/datasets.rdx +lib/R/library/datasets/help/paths.rds +lib/R/library/datasets/html/00Index.html +lib/R/library/datasets/html/R.css lib/R/library/foreign/COPYRIGHTS lib/R/library/foreign/DESCRIPTION lib/R/library/foreign/INDEX @@ -436,13 +436,13 @@ lib/R/library/foreign/R/foreign.rdx lib/R/library/foreign/files/HillRace.SYD lib/R/library/foreign/files/Iris.syd lib/R/library/foreign/files/sids.dbf -%%ALLDOCS%%lib/R/library/foreign/help/AnIndex -%%ALLDOCS%%lib/R/library/foreign/help/aliases.rds -%%ALLDOCS%%lib/R/library/foreign/help/foreign.rdb -%%ALLDOCS%%lib/R/library/foreign/help/foreign.rdx -%%ALLDOCS%%lib/R/library/foreign/help/paths.rds -%%ALLDOCS%%lib/R/library/foreign/html/00Index.html -%%ALLDOCS%%lib/R/library/foreign/html/R.css +lib/R/library/foreign/help/AnIndex +lib/R/library/foreign/help/aliases.rds +lib/R/library/foreign/help/foreign.rdb +lib/R/library/foreign/help/foreign.rdx +lib/R/library/foreign/help/paths.rds +lib/R/library/foreign/html/00Index.html +lib/R/library/foreign/html/R.css lib/R/library/foreign/libs/foreign.so %%NLS%%lib/R/library/foreign/po/de/LC_MESSAGES/R-foreign.mo %%NLS%%lib/R/library/foreign/po/de/LC_MESSAGES/foreign.mo @@ -577,13 +577,13 @@ lib/R/library/grDevices/enc/MacRoman.enc lib/R/library/grDevices/enc/PDFDoc.enc lib/R/library/grDevices/enc/TeXtext.enc lib/R/library/grDevices/enc/WinAnsi.enc -%%ALLDOCS%%lib/R/library/grDevices/help/AnIndex -%%ALLDOCS%%lib/R/library/grDevices/help/aliases.rds -%%ALLDOCS%%lib/R/library/grDevices/help/grDevices.rdb -%%ALLDOCS%%lib/R/library/grDevices/help/grDevices.rdx -%%ALLDOCS%%lib/R/library/grDevices/help/paths.rds -%%ALLDOCS%%lib/R/library/grDevices/html/00Index.html -%%ALLDOCS%%lib/R/library/grDevices/html/R.css +lib/R/library/grDevices/help/AnIndex +lib/R/library/grDevices/help/aliases.rds +lib/R/library/grDevices/help/grDevices.rdb +lib/R/library/grDevices/help/grDevices.rdx +lib/R/library/grDevices/help/paths.rds +lib/R/library/grDevices/html/00Index.html +lib/R/library/grDevices/html/R.css lib/R/library/grDevices/icc/srgb lib/R/library/grDevices/icc/srgb.flate %%CAIROPANGO%%lib/R/library/grDevices/libs/cairo.so @@ -606,82 +606,82 @@ lib/R/library/graphics/demo/graphics.R lib/R/library/graphics/demo/image.R lib/R/library/graphics/demo/persp.R lib/R/library/graphics/demo/plotmath.R -%%ALLDOCS%%lib/R/library/graphics/help/AnIndex -%%ALLDOCS%%lib/R/library/graphics/help/aliases.rds -%%ALLDOCS%%lib/R/library/graphics/help/figures/mai.pdf -%%ALLDOCS%%lib/R/library/graphics/help/figures/mai.png -%%ALLDOCS%%lib/R/library/graphics/help/figures/oma.pdf -%%ALLDOCS%%lib/R/library/graphics/help/figures/oma.png -%%ALLDOCS%%lib/R/library/graphics/help/figures/pch.pdf -%%ALLDOCS%%lib/R/library/graphics/help/figures/pch.png -%%ALLDOCS%%lib/R/library/graphics/help/figures/pch.svg -%%ALLDOCS%%lib/R/library/graphics/help/graphics.rdb -%%ALLDOCS%%lib/R/library/graphics/help/graphics.rdx -%%ALLDOCS%%lib/R/library/graphics/help/paths.rds -%%ALLDOCS%%lib/R/library/graphics/html/00Index.html -%%ALLDOCS%%lib/R/library/graphics/html/R.css +lib/R/library/graphics/help/AnIndex +lib/R/library/graphics/help/aliases.rds +lib/R/library/graphics/help/figures/mai.pdf +lib/R/library/graphics/help/figures/mai.png +lib/R/library/graphics/help/figures/oma.pdf +lib/R/library/graphics/help/figures/oma.png +lib/R/library/graphics/help/figures/pch.pdf +lib/R/library/graphics/help/figures/pch.png +lib/R/library/graphics/help/figures/pch.svg +lib/R/library/graphics/help/graphics.rdb +lib/R/library/graphics/help/graphics.rdx +lib/R/library/graphics/help/paths.rds +lib/R/library/graphics/html/00Index.html +lib/R/library/graphics/html/R.css lib/R/library/graphics/libs/graphics.so lib/R/library/grid/DESCRIPTION lib/R/library/grid/INDEX -%%ALLDOCS%%lib/R/library/grid/doc/DivByZero.txt +lib/R/library/grid/doc/DivByZero.txt lib/R/library/grid/Meta/Rd.rds lib/R/library/grid/Meta/hsearch.rds lib/R/library/grid/Meta/links.rds lib/R/library/grid/Meta/nsInfo.rds lib/R/library/grid/Meta/package.rds -%%ALLDOCS%%lib/R/library/grid/Meta/vignette.rds +%%PORTDOCS%%lib/R/library/grid/Meta/vignette.rds lib/R/library/grid/NAMESPACE lib/R/library/grid/R/grid lib/R/library/grid/R/grid.rdb lib/R/library/grid/R/grid.rdx -%%ALLDOCS%%lib/R/library/grid/doc/changes.txt -%%ALLDOCS%%lib/R/library/grid/doc/displaylist.R -%%ALLDOCS%%lib/R/library/grid/doc/displaylist.Rnw -%%ALLDOCS%%lib/R/library/grid/doc/displaylist.pdf -%%ALLDOCS%%lib/R/library/grid/doc/frame.R -%%ALLDOCS%%lib/R/library/grid/doc/frame.Rnw -%%ALLDOCS%%lib/R/library/grid/doc/frame.pdf -%%ALLDOCS%%lib/R/library/grid/doc/grid.R -%%ALLDOCS%%lib/R/library/grid/doc/grid.Rnw -%%ALLDOCS%%lib/R/library/grid/doc/grid.pdf -%%ALLDOCS%%lib/R/library/grid/doc/grobs.R -%%ALLDOCS%%lib/R/library/grid/doc/grobs.Rnw -%%ALLDOCS%%lib/R/library/grid/doc/grobs.pdf -%%ALLDOCS%%lib/R/library/grid/doc/index.html -%%ALLDOCS%%lib/R/library/grid/doc/interactive.R -%%ALLDOCS%%lib/R/library/grid/doc/interactive.Rnw -%%ALLDOCS%%lib/R/library/grid/doc/interactive.pdf -%%ALLDOCS%%lib/R/library/grid/doc/locndimn.R -%%ALLDOCS%%lib/R/library/grid/doc/locndimn.Rnw -%%ALLDOCS%%lib/R/library/grid/doc/locndimn.pdf -%%ALLDOCS%%lib/R/library/grid/doc/moveline.R -%%ALLDOCS%%lib/R/library/grid/doc/moveline.Rnw -%%ALLDOCS%%lib/R/library/grid/doc/moveline.pdf -%%ALLDOCS%%lib/R/library/grid/doc/nonfinite.R -%%ALLDOCS%%lib/R/library/grid/doc/nonfinite.Rnw -%%ALLDOCS%%lib/R/library/grid/doc/nonfinite.pdf -%%ALLDOCS%%lib/R/library/grid/doc/plotexample.R -%%ALLDOCS%%lib/R/library/grid/doc/plotexample.Rnw -%%ALLDOCS%%lib/R/library/grid/doc/plotexample.pdf -%%ALLDOCS%%lib/R/library/grid/doc/rotated.R -%%ALLDOCS%%lib/R/library/grid/doc/rotated.Rnw -%%ALLDOCS%%lib/R/library/grid/doc/rotated.pdf -%%ALLDOCS%%lib/R/library/grid/doc/saveload.R -%%ALLDOCS%%lib/R/library/grid/doc/saveload.Rnw -%%ALLDOCS%%lib/R/library/grid/doc/saveload.pdf -%%ALLDOCS%%lib/R/library/grid/doc/sharing.R -%%ALLDOCS%%lib/R/library/grid/doc/sharing.Rnw -%%ALLDOCS%%lib/R/library/grid/doc/sharing.pdf -%%ALLDOCS%%lib/R/library/grid/doc/viewports.R -%%ALLDOCS%%lib/R/library/grid/doc/viewports.Rnw -%%ALLDOCS%%lib/R/library/grid/doc/viewports.pdf -%%ALLDOCS%%lib/R/library/grid/help/AnIndex -%%ALLDOCS%%lib/R/library/grid/help/aliases.rds -%%ALLDOCS%%lib/R/library/grid/help/grid.rdb -%%ALLDOCS%%lib/R/library/grid/help/grid.rdx -%%ALLDOCS%%lib/R/library/grid/help/paths.rds -%%ALLDOCS%%lib/R/library/grid/html/00Index.html -%%ALLDOCS%%lib/R/library/grid/html/R.css +lib/R/library/grid/doc/changes.txt +%%PORTDOCS%%lib/R/library/grid/doc/displaylist.R +%%PORTDOCS%%lib/R/library/grid/doc/displaylist.Rnw +lib/R/library/grid/doc/displaylist.pdf +%%PORTDOCS%%lib/R/library/grid/doc/frame.R +%%PORTDOCS%%lib/R/library/grid/doc/frame.Rnw +lib/R/library/grid/doc/frame.pdf +%%PORTDOCS%%lib/R/library/grid/doc/grid.R +%%PORTDOCS%%lib/R/library/grid/doc/grid.Rnw +lib/R/library/grid/doc/grid.pdf +%%PORTDOCS%%lib/R/library/grid/doc/grobs.R +%%PORTDOCS%%lib/R/library/grid/doc/grobs.Rnw +lib/R/library/grid/doc/grobs.pdf +%%PORTDOCS%%lib/R/library/grid/doc/index.html +%%PORTDOCS%%lib/R/library/grid/doc/interactive.R +%%PORTDOCS%%lib/R/library/grid/doc/interactive.Rnw +lib/R/library/grid/doc/interactive.pdf +%%PORTDOCS%%lib/R/library/grid/doc/locndimn.R +%%PORTDOCS%%lib/R/library/grid/doc/locndimn.Rnw +lib/R/library/grid/doc/locndimn.pdf +%%PORTDOCS%%lib/R/library/grid/doc/moveline.R +%%PORTDOCS%%lib/R/library/grid/doc/moveline.Rnw +lib/R/library/grid/doc/moveline.pdf +%%PORTDOCS%%lib/R/library/grid/doc/nonfinite.R +%%PORTDOCS%%lib/R/library/grid/doc/nonfinite.Rnw +lib/R/library/grid/doc/nonfinite.pdf +%%PORTDOCS%%lib/R/library/grid/doc/plotexample.R +%%PORTDOCS%%lib/R/library/grid/doc/plotexample.Rnw +lib/R/library/grid/doc/plotexample.pdf +%%PORTDOCS%%lib/R/library/grid/doc/rotated.R +%%PORTDOCS%%lib/R/library/grid/doc/rotated.Rnw +lib/R/library/grid/doc/rotated.pdf +%%PORTDOCS%%lib/R/library/grid/doc/saveload.R +%%PORTDOCS%%lib/R/library/grid/doc/saveload.Rnw +lib/R/library/grid/doc/saveload.pdf +%%PORTDOCS%%lib/R/library/grid/doc/sharing.R +%%PORTDOCS%%lib/R/library/grid/doc/sharing.Rnw +lib/R/library/grid/doc/sharing.pdf +%%PORTDOCS%%lib/R/library/grid/doc/viewports.R +%%PORTDOCS%%lib/R/library/grid/doc/viewports.Rnw +lib/R/library/grid/doc/viewports.pdf +lib/R/library/grid/help/AnIndex +lib/R/library/grid/help/aliases.rds +lib/R/library/grid/help/grid.rdb +lib/R/library/grid/help/grid.rdx +lib/R/library/grid/help/paths.rds +lib/R/library/grid/html/00Index.html +lib/R/library/grid/html/R.css lib/R/library/grid/libs/grid.so lib/R/library/lattice/CITATION lib/R/library/lattice/DESCRIPTION @@ -705,13 +705,13 @@ lib/R/library/lattice/demo/intervals.R lib/R/library/lattice/demo/labels.R lib/R/library/lattice/demo/lattice.R lib/R/library/lattice/demo/panel.R -%%ALLDOCS%%lib/R/library/lattice/help/AnIndex -%%ALLDOCS%%lib/R/library/lattice/help/aliases.rds -%%ALLDOCS%%lib/R/library/lattice/help/lattice.rdb -%%ALLDOCS%%lib/R/library/lattice/help/lattice.rdx -%%ALLDOCS%%lib/R/library/lattice/help/paths.rds -%%ALLDOCS%%lib/R/library/lattice/html/00Index.html -%%ALLDOCS%%lib/R/library/lattice/html/R.css +lib/R/library/lattice/help/AnIndex +lib/R/library/lattice/help/aliases.rds +lib/R/library/lattice/help/lattice.rdb +lib/R/library/lattice/help/lattice.rdx +lib/R/library/lattice/help/paths.rds +lib/R/library/lattice/html/00Index.html +lib/R/library/lattice/html/R.css lib/R/library/lattice/libs/lattice.so %%NLS%%lib/R/library/lattice/po/de/LC_MESSAGES/R-lattice.mo %%NLS%%lib/R/library/lattice/po/en@quot/LC_MESSAGES/R-lattice.mo @@ -729,13 +729,13 @@ lib/R/library/methods/NAMESPACE lib/R/library/methods/R/methods lib/R/library/methods/R/methods.rdb lib/R/library/methods/R/methods.rdx -%%ALLDOCS%%lib/R/library/methods/help/AnIndex -%%ALLDOCS%%lib/R/library/methods/help/aliases.rds -%%ALLDOCS%%lib/R/library/methods/help/methods.rdb -%%ALLDOCS%%lib/R/library/methods/help/methods.rdx -%%ALLDOCS%%lib/R/library/methods/help/paths.rds -%%ALLDOCS%%lib/R/library/methods/html/00Index.html -%%ALLDOCS%%lib/R/library/methods/html/R.css +lib/R/library/methods/help/AnIndex +lib/R/library/methods/help/aliases.rds +lib/R/library/methods/help/methods.rdb +lib/R/library/methods/help/methods.rdx +lib/R/library/methods/help/paths.rds +lib/R/library/methods/html/00Index.html +lib/R/library/methods/html/R.css lib/R/library/methods/libs/methods.so lib/R/library/mgcv/CITATION lib/R/library/mgcv/DESCRIPTION @@ -752,13 +752,13 @@ lib/R/library/mgcv/R/mgcv.rdb lib/R/library/mgcv/R/mgcv.rdx lib/R/library/mgcv/data/columb.polys.rda lib/R/library/mgcv/data/columb.rda -%%ALLDOCS%%lib/R/library/mgcv/help/AnIndex -%%ALLDOCS%%lib/R/library/mgcv/help/aliases.rds -%%ALLDOCS%%lib/R/library/mgcv/help/mgcv.rdb -%%ALLDOCS%%lib/R/library/mgcv/help/mgcv.rdx -%%ALLDOCS%%lib/R/library/mgcv/help/paths.rds -%%ALLDOCS%%lib/R/library/mgcv/html/00Index.html -%%ALLDOCS%%lib/R/library/mgcv/html/R.css +lib/R/library/mgcv/help/AnIndex +lib/R/library/mgcv/help/aliases.rds +lib/R/library/mgcv/help/mgcv.rdb +lib/R/library/mgcv/help/mgcv.rdx +lib/R/library/mgcv/help/paths.rds +lib/R/library/mgcv/html/00Index.html +lib/R/library/mgcv/html/R.css lib/R/library/mgcv/libs/mgcv.so %%NLS%%lib/R/library/mgcv/po/de/LC_MESSAGES/R-mgcv.mo %%NLS%%lib/R/library/mgcv/po/de/LC_MESSAGES/mgcv.mo @@ -787,13 +787,13 @@ lib/R/library/nlme/R/nlme.rdx lib/R/library/nlme/data/Rdata.rdb lib/R/library/nlme/data/Rdata.rds lib/R/library/nlme/data/Rdata.rdx -%%ALLDOCS%%lib/R/library/nlme/help/AnIndex -%%ALLDOCS%%lib/R/library/nlme/help/aliases.rds -%%ALLDOCS%%lib/R/library/nlme/help/nlme.rdb -%%ALLDOCS%%lib/R/library/nlme/help/nlme.rdx -%%ALLDOCS%%lib/R/library/nlme/help/paths.rds -%%ALLDOCS%%lib/R/library/nlme/html/00Index.html -%%ALLDOCS%%lib/R/library/nlme/html/R.css +lib/R/library/nlme/help/AnIndex +lib/R/library/nlme/help/aliases.rds +lib/R/library/nlme/help/nlme.rdb +lib/R/library/nlme/help/nlme.rdx +lib/R/library/nlme/help/paths.rds +lib/R/library/nlme/html/00Index.html +lib/R/library/nlme/html/R.css lib/R/library/nlme/libs/nlme.so lib/R/library/nlme/mlbook/README lib/R/library/nlme/mlbook/ch04.R @@ -830,13 +830,13 @@ lib/R/library/nnet/NEWS lib/R/library/nnet/R/nnet lib/R/library/nnet/R/nnet.rdb lib/R/library/nnet/R/nnet.rdx -%%ALLDOCS%%lib/R/library/nnet/help/AnIndex -%%ALLDOCS%%lib/R/library/nnet/help/aliases.rds -%%ALLDOCS%%lib/R/library/nnet/help/nnet.rdb -%%ALLDOCS%%lib/R/library/nnet/help/nnet.rdx -%%ALLDOCS%%lib/R/library/nnet/help/paths.rds -%%ALLDOCS%%lib/R/library/nnet/html/00Index.html -%%ALLDOCS%%lib/R/library/nnet/html/R.css +lib/R/library/nnet/help/AnIndex +lib/R/library/nnet/help/aliases.rds +lib/R/library/nnet/help/nnet.rdb +lib/R/library/nnet/help/nnet.rdx +lib/R/library/nnet/help/paths.rds +lib/R/library/nnet/html/00Index.html +lib/R/library/nnet/html/R.css lib/R/library/nnet/libs/nnet.so %%NLS%%lib/R/library/nnet/po/de/LC_MESSAGES/R-nnet.mo %%NLS%%lib/R/library/nnet/po/en@quot/LC_MESSAGES/R-nnet.mo @@ -850,22 +850,22 @@ lib/R/library/parallel/Meta/hsearch.rds lib/R/library/parallel/Meta/links.rds lib/R/library/parallel/Meta/nsInfo.rds lib/R/library/parallel/Meta/package.rds -%%ALLDOCS%%lib/R/library/parallel/Meta/vignette.rds +%%PORTDOCS%%lib/R/library/parallel/Meta/vignette.rds lib/R/library/parallel/NAMESPACE lib/R/library/parallel/R/parallel lib/R/library/parallel/R/parallel.rdb lib/R/library/parallel/R/parallel.rdx -%%ALLDOCS%%lib/R/library/parallel/doc/index.html -%%ALLDOCS%%lib/R/library/parallel/doc/parallel.R -%%ALLDOCS%%lib/R/library/parallel/doc/parallel.Rnw -%%ALLDOCS%%lib/R/library/parallel/doc/parallel.pdf -%%ALLDOCS%%lib/R/library/parallel/help/AnIndex -%%ALLDOCS%%lib/R/library/parallel/help/aliases.rds -%%ALLDOCS%%lib/R/library/parallel/help/parallel.rdb -%%ALLDOCS%%lib/R/library/parallel/help/parallel.rdx -%%ALLDOCS%%lib/R/library/parallel/help/paths.rds -%%ALLDOCS%%lib/R/library/parallel/html/00Index.html -%%ALLDOCS%%lib/R/library/parallel/html/R.css +%%PORTDOCS%%lib/R/library/parallel/doc/index.html +%%PORTDOCS%%lib/R/library/parallel/doc/parallel.R +%%PORTDOCS%%lib/R/library/parallel/doc/parallel.Rnw +lib/R/library/parallel/doc/parallel.pdf +lib/R/library/parallel/help/AnIndex +lib/R/library/parallel/help/aliases.rds +lib/R/library/parallel/help/parallel.rdb +lib/R/library/parallel/help/parallel.rdx +lib/R/library/parallel/help/paths.rds +lib/R/library/parallel/html/00Index.html +lib/R/library/parallel/html/R.css lib/R/library/parallel/libs/parallel.so lib/R/library/rpart/DESCRIPTION lib/R/library/rpart/INDEX @@ -876,7 +876,7 @@ lib/R/library/rpart/Meta/hsearch.rds lib/R/library/rpart/Meta/links.rds lib/R/library/rpart/Meta/nsInfo.rds lib/R/library/rpart/Meta/package.rds -lib/R/library/rpart/Meta/vignette.rds +%%PORTDOCS%%lib/R/library/rpart/Meta/vignette.rds lib/R/library/rpart/NAMESPACE lib/R/library/rpart/R/rpart lib/R/library/rpart/R/rpart.rdb @@ -884,20 +884,20 @@ lib/R/library/rpart/R/rpart.rdx lib/R/library/rpart/data/Rdata.rdb lib/R/library/rpart/data/Rdata.rds lib/R/library/rpart/data/Rdata.rdx -%%ALLDOCS%%lib/R/library/rpart/doc/index.html -%%ALLDOCS%%lib/R/library/rpart/doc/longintro.R -%%ALLDOCS%%lib/R/library/rpart/doc/longintro.Rnw -%%ALLDOCS%%lib/R/library/rpart/doc/longintro.pdf -%%ALLDOCS%%lib/R/library/rpart/doc/usercode.R -%%ALLDOCS%%lib/R/library/rpart/doc/usercode.Rnw -%%ALLDOCS%%lib/R/library/rpart/doc/usercode.pdf -%%ALLDOCS%%lib/R/library/rpart/help/AnIndex -%%ALLDOCS%%lib/R/library/rpart/help/aliases.rds -%%ALLDOCS%%lib/R/library/rpart/help/paths.rds -%%ALLDOCS%%lib/R/library/rpart/help/rpart.rdb -%%ALLDOCS%%lib/R/library/rpart/help/rpart.rdx -%%ALLDOCS%%lib/R/library/rpart/html/00Index.html -%%ALLDOCS%%lib/R/library/rpart/html/R.css +lib/R/library/rpart/doc/index.html +lib/R/library/rpart/doc/longintro.R +lib/R/library/rpart/doc/longintro.Rnw +lib/R/library/rpart/doc/longintro.pdf +lib/R/library/rpart/doc/usercode.R +lib/R/library/rpart/doc/usercode.Rnw +lib/R/library/rpart/doc/usercode.pdf +lib/R/library/rpart/help/AnIndex +lib/R/library/rpart/help/aliases.rds +lib/R/library/rpart/help/paths.rds +lib/R/library/rpart/help/rpart.rdb +lib/R/library/rpart/help/rpart.rdx +lib/R/library/rpart/html/00Index.html +lib/R/library/rpart/html/R.css lib/R/library/rpart/libs/rpart.so %%NLS%%lib/R/library/rpart/po/de/LC_MESSAGES/R-rpart.mo %%NLS%%lib/R/library/rpart/po/de/LC_MESSAGES/rpart.mo @@ -925,13 +925,13 @@ lib/R/library/spatial/PP.files lib/R/library/spatial/R/spatial lib/R/library/spatial/R/spatial.rdb lib/R/library/spatial/R/spatial.rdx -%%ALLDOCS%%lib/R/library/spatial/help/AnIndex -%%ALLDOCS%%lib/R/library/spatial/help/aliases.rds -%%ALLDOCS%%lib/R/library/spatial/help/paths.rds -%%ALLDOCS%%lib/R/library/spatial/help/spatial.rdb -%%ALLDOCS%%lib/R/library/spatial/help/spatial.rdx -%%ALLDOCS%%lib/R/library/spatial/html/00Index.html -%%ALLDOCS%%lib/R/library/spatial/html/R.css +lib/R/library/spatial/help/AnIndex +lib/R/library/spatial/help/aliases.rds +lib/R/library/spatial/help/paths.rds +lib/R/library/spatial/help/spatial.rdb +lib/R/library/spatial/help/spatial.rdx +lib/R/library/spatial/html/00Index.html +lib/R/library/spatial/html/R.css lib/R/library/spatial/libs/spatial.so %%NLS%%lib/R/library/spatial/po/ko/LC_MESSAGES/R-spatial.mo %%NLS%%lib/R/library/spatial/po/de/LC_MESSAGES/R-spatial.mo @@ -973,13 +973,13 @@ lib/R/library/splines/NAMESPACE lib/R/library/splines/R/splines lib/R/library/splines/R/splines.rdb lib/R/library/splines/R/splines.rdx -%%ALLDOCS%%lib/R/library/splines/help/AnIndex -%%ALLDOCS%%lib/R/library/splines/help/aliases.rds -%%ALLDOCS%%lib/R/library/splines/help/paths.rds -%%ALLDOCS%%lib/R/library/splines/help/splines.rdb -%%ALLDOCS%%lib/R/library/splines/help/splines.rdx -%%ALLDOCS%%lib/R/library/splines/html/00Index.html -%%ALLDOCS%%lib/R/library/splines/html/R.css +lib/R/library/splines/help/AnIndex +lib/R/library/splines/help/aliases.rds +lib/R/library/splines/help/paths.rds +lib/R/library/splines/help/splines.rdb +lib/R/library/splines/help/splines.rdx +lib/R/library/splines/html/00Index.html +lib/R/library/splines/html/R.css lib/R/library/splines/libs/splines.so lib/R/library/stats4/DESCRIPTION lib/R/library/stats4/INDEX @@ -992,13 +992,13 @@ lib/R/library/stats4/NAMESPACE lib/R/library/stats4/R/stats4 lib/R/library/stats4/R/stats4.rdb lib/R/library/stats4/R/stats4.rdx -%%ALLDOCS%%lib/R/library/stats4/help/AnIndex -%%ALLDOCS%%lib/R/library/stats4/help/aliases.rds -%%ALLDOCS%%lib/R/library/stats4/help/paths.rds -%%ALLDOCS%%lib/R/library/stats4/help/stats4.rdb -%%ALLDOCS%%lib/R/library/stats4/help/stats4.rdx -%%ALLDOCS%%lib/R/library/stats4/html/00Index.html -%%ALLDOCS%%lib/R/library/stats4/html/R.css +lib/R/library/stats4/help/AnIndex +lib/R/library/stats4/help/aliases.rds +lib/R/library/stats4/help/paths.rds +lib/R/library/stats4/help/stats4.rdb +lib/R/library/stats4/help/stats4.rdx +lib/R/library/stats4/html/00Index.html +lib/R/library/stats4/html/R.css lib/R/library/stats/COPYRIGHTS.modreg lib/R/library/stats/DESCRIPTION lib/R/library/stats/INDEX @@ -1017,13 +1017,13 @@ lib/R/library/stats/demo/glm.vr.R lib/R/library/stats/demo/lm.glm.R lib/R/library/stats/demo/nlm.R lib/R/library/stats/demo/smooth.R -%%ALLDOCS%%lib/R/library/stats/help/AnIndex -%%ALLDOCS%%lib/R/library/stats/help/aliases.rds -%%ALLDOCS%%lib/R/library/stats/help/paths.rds -%%ALLDOCS%%lib/R/library/stats/help/stats.rdb -%%ALLDOCS%%lib/R/library/stats/help/stats.rdx -%%ALLDOCS%%lib/R/library/stats/html/00Index.html -%%ALLDOCS%%lib/R/library/stats/html/R.css +lib/R/library/stats/help/AnIndex +lib/R/library/stats/help/aliases.rds +lib/R/library/stats/help/paths.rds +lib/R/library/stats/help/stats.rdb +lib/R/library/stats/help/stats.rdx +lib/R/library/stats/html/00Index.html +lib/R/library/stats/html/R.css lib/R/library/stats/libs/stats.so lib/R/library/survival/COPYRIGHTS lib/R/library/survival/CITATION @@ -1045,32 +1045,32 @@ lib/R/library/survival/R/survival.rdx lib/R/library/survival/data/Rdata.rdb lib/R/library/survival/data/Rdata.rds lib/R/library/survival/data/Rdata.rdx -%%ALLDOCS%%lib/R/library/survival/doc/index.html -%%ALLDOCS%%lib/R/library/survival/doc/adjcurve.R -%%ALLDOCS%%lib/R/library/survival/doc/adjcurve.Rnw -%%ALLDOCS%%lib/R/library/survival/doc/adjcurve.pdf -%%ALLDOCS%%lib/R/library/survival/doc/compete.R -%%ALLDOCS%%lib/R/library/survival/doc/compete.Rnw -%%ALLDOCS%%lib/R/library/survival/doc/compete.pdf -%%ALLDOCS%%lib/R/library/survival/doc/splines.R -%%ALLDOCS%%lib/R/library/survival/doc/splines.Rnw -%%ALLDOCS%%lib/R/library/survival/doc/splines.pdf -%%ALLDOCS%%lib/R/library/survival/doc/tests.R -%%ALLDOCS%%lib/R/library/survival/doc/tests.Rnw -%%ALLDOCS%%lib/R/library/survival/doc/tests.pdf -%%ALLDOCS%%lib/R/library/survival/doc/timedep.R -%%ALLDOCS%%lib/R/library/survival/doc/timedep.Rnw -%%ALLDOCS%%lib/R/library/survival/doc/timedep.pdf -%%ALLDOCS%%lib/R/library/survival/doc/validate.pdf -%%ALLDOCS%%lib/R/library/survival/doc/validate.R -%%ALLDOCS%%lib/R/library/survival/doc/validate.Rnw -%%ALLDOCS%%lib/R/library/survival/help/AnIndex -%%ALLDOCS%%lib/R/library/survival/help/aliases.rds -%%ALLDOCS%%lib/R/library/survival/help/paths.rds -%%ALLDOCS%%lib/R/library/survival/help/survival.rdb -%%ALLDOCS%%lib/R/library/survival/help/survival.rdx -%%ALLDOCS%%lib/R/library/survival/html/00Index.html -%%ALLDOCS%%lib/R/library/survival/html/R.css +lib/R/library/survival/doc/index.html +lib/R/library/survival/doc/adjcurve.R +lib/R/library/survival/doc/adjcurve.Rnw +lib/R/library/survival/doc/adjcurve.pdf +lib/R/library/survival/doc/compete.R +lib/R/library/survival/doc/compete.Rnw +lib/R/library/survival/doc/compete.pdf +lib/R/library/survival/doc/splines.R +lib/R/library/survival/doc/splines.Rnw +lib/R/library/survival/doc/splines.pdf +lib/R/library/survival/doc/tests.R +lib/R/library/survival/doc/tests.Rnw +lib/R/library/survival/doc/tests.pdf +lib/R/library/survival/doc/timedep.R +lib/R/library/survival/doc/timedep.Rnw +lib/R/library/survival/doc/timedep.pdf +lib/R/library/survival/doc/validate.pdf +lib/R/library/survival/doc/validate.R +lib/R/library/survival/doc/validate.Rnw +lib/R/library/survival/help/AnIndex +lib/R/library/survival/help/aliases.rds +lib/R/library/survival/help/paths.rds +lib/R/library/survival/help/survival.rdb +lib/R/library/survival/help/survival.rdx +lib/R/library/survival/html/00Index.html +lib/R/library/survival/html/R.css lib/R/library/survival/libs/survival.so lib/R/library/tcltk/DESCRIPTION lib/R/library/tcltk/INDEX @@ -1100,13 +1100,13 @@ lib/R/library/tcltk/exec/util-string.tcl lib/R/library/tcltk/exec/util.tcl lib/R/library/tcltk/exec/util-tk.tcl lib/R/library/tcltk/exec/widget.tcl -%%ALLDOCS%%lib/R/library/tcltk/help/AnIndex -%%ALLDOCS%%lib/R/library/tcltk/help/aliases.rds -%%ALLDOCS%%lib/R/library/tcltk/help/paths.rds -%%ALLDOCS%%lib/R/library/tcltk/help/tcltk.rdb -%%ALLDOCS%%lib/R/library/tcltk/help/tcltk.rdx -%%ALLDOCS%%lib/R/library/tcltk/html/00Index.html -%%ALLDOCS%%lib/R/library/tcltk/html/R.css +lib/R/library/tcltk/help/AnIndex +lib/R/library/tcltk/help/aliases.rds +lib/R/library/tcltk/help/paths.rds +lib/R/library/tcltk/help/tcltk.rdb +lib/R/library/tcltk/help/tcltk.rdx +lib/R/library/tcltk/html/00Index.html +lib/R/library/tcltk/html/R.css %%TCLTK%%lib/R/library/tcltk/libs/tcltk.so lib/R/library/tools/DESCRIPTION lib/R/library/tools/INDEX @@ -1121,13 +1121,13 @@ lib/R/library/tools/R/sysdata.rdx lib/R/library/tools/R/tools lib/R/library/tools/R/tools.rdb lib/R/library/tools/R/tools.rdx -%%ALLDOCS%%lib/R/library/tools/help/AnIndex -%%ALLDOCS%%lib/R/library/tools/help/aliases.rds -%%ALLDOCS%%lib/R/library/tools/help/paths.rds -%%ALLDOCS%%lib/R/library/tools/help/tools.rdb -%%ALLDOCS%%lib/R/library/tools/help/tools.rdx -%%ALLDOCS%%lib/R/library/tools/html/00Index.html -%%ALLDOCS%%lib/R/library/tools/html/R.css +lib/R/library/tools/help/AnIndex +lib/R/library/tools/help/aliases.rds +lib/R/library/tools/help/paths.rds +lib/R/library/tools/help/tools.rdb +lib/R/library/tools/help/tools.rdx +lib/R/library/tools/html/00Index.html +lib/R/library/tools/html/R.css lib/R/library/tools/libs/tools.so lib/R/library/translations/DESCRIPTION %%NLS%%lib/R/library/translations/da/LC_MESSAGES/R-base.mo @@ -1416,7 +1416,7 @@ lib/R/library/utils/Meta/hsearch.rds lib/R/library/utils/Meta/links.rds lib/R/library/utils/Meta/nsInfo.rds lib/R/library/utils/Meta/package.rds -%%ALLDOCS%%lib/R/library/utils/Meta/vignette.rds +%%PORTDOCS%%lib/R/library/utils/Meta/vignette.rds lib/R/library/utils/NAMESPACE lib/R/library/utils/R/sysdata.rdb lib/R/library/utils/R/sysdata.rdx @@ -1425,17 +1425,17 @@ lib/R/library/utils/R/utils.rdb lib/R/library/utils/R/utils.rdx lib/R/library/utils/Sweave/Sweave-test-1.Rnw lib/R/library/utils/Sweave/example-1.Rnw -%%ALLDOCS%%lib/R/library/utils/doc/Sweave.R -%%ALLDOCS%%lib/R/library/utils/doc/Sweave.Rnw -%%ALLDOCS%%lib/R/library/utils/doc/Sweave.pdf -%%ALLDOCS%%lib/R/library/utils/doc/index.html -%%ALLDOCS%%lib/R/library/utils/help/AnIndex -%%ALLDOCS%%lib/R/library/utils/help/aliases.rds -%%ALLDOCS%%lib/R/library/utils/help/paths.rds -%%ALLDOCS%%lib/R/library/utils/help/utils.rdb -%%ALLDOCS%%lib/R/library/utils/help/utils.rdx -%%ALLDOCS%%lib/R/library/utils/html/00Index.html -%%ALLDOCS%%lib/R/library/utils/html/R.css +%%PORTDOCS%%lib/R/library/utils/doc/Sweave.R +%%PORTDOCS%%lib/R/library/utils/doc/Sweave.Rnw +lib/R/library/utils/doc/Sweave.pdf +%%PORTDOCS%%lib/R/library/utils/doc/index.html +lib/R/library/utils/help/AnIndex +lib/R/library/utils/help/aliases.rds +lib/R/library/utils/help/paths.rds +lib/R/library/utils/help/utils.rdb +lib/R/library/utils/help/utils.rdx +lib/R/library/utils/html/00Index.html +lib/R/library/utils/html/R.css lib/R/library/utils/iconvlist lib/R/library/utils/libs/utils.so lib/R/library/utils/misc/exDIF.csv @@ -1490,32 +1490,32 @@ lib/R/share/texmf/tex/latex/ts1aett.fd %%LIBR%%libdata/pkgconfig/libR.pc man/man1/R.1.gz man/man1/Rscript.1.gz -%%ALLDOCS%%%%DOCSDIR%%/html/Rlogo.pdf -%%ALLDOCS%%%%DOCSDIR%%/html/Rlogo.svg -%%ALLDOCS%%%%DOCSDIR%%/manual/R-FAQ.pdf -%%ALLDOCS%%%%DOCSDIR%%/manual/R-admin.pdf -%%ALLDOCS%%%%DOCSDIR%%/manual/R-data.pdf -%%ALLDOCS%%%%DOCSDIR%%/manual/R-exts.pdf -%%ALLDOCS%%%%DOCSDIR%%/manual/R-intro.pdf -%%ALLDOCS%%%%DOCSDIR%%/manual/R-ints.pdf -%%ALLDOCS%%%%DOCSDIR%%/manual/R-lang.pdf -%%ALLDOCS%%%%DOCSDIR%%/manual/fullrefman.pdf -%%ALLDOCS%%%%DOCSDIR%%/BioC_mirrors.csv -%%ALLDOCS%%%%DOCSDIR%%/NEWS -%%ALLDOCS%%%%DOCSDIR%%/NEWS.0 -%%ALLDOCS%%%%DOCSDIR%%/NEWS.1 -%%ALLDOCS%%%%DOCSDIR%%/NEWS.2 -%%ALLDOCS%%%%DOCSDIR%%/NEWS.pdf -%%ALLDOCS%%%%DOCSDIR%%/manual/images/QQ.png -%%ALLDOCS%%%%DOCSDIR%%/manual/images/ecdf.png -%%ALLDOCS%%%%DOCSDIR%%/manual/images/fig11.png -%%ALLDOCS%%%%DOCSDIR%%/manual/images/fig12.png -%%ALLDOCS%%%%DOCSDIR%%/manual/images/hist.png -%%ALLDOCS%%%%DOCSDIR%%/manual/images/ice.png -%%ALLDOCS%%%%DOCSDIR%%/manual/R-FAQ.html -%%ALLDOCS%%%%DOCSDIR%%/manual/R-admin.html -%%ALLDOCS%%%%DOCSDIR%%/manual/R-data.html -%%ALLDOCS%%%%DOCSDIR%%/manual/R-exts.html -%%ALLDOCS%%%%DOCSDIR%%/manual/R-intro.html -%%ALLDOCS%%%%DOCSDIR%%/manual/R-ints.html -%%ALLDOCS%%%%DOCSDIR%%/manual/R-lang.html +%%DOCSDIR%%/html/Rlogo.pdf +%%DOCSDIR%%/html/Rlogo.svg +%%PORTDOCS%%%%DOCSDIR%%/manual/R-FAQ.pdf +%%PORTDOCS%%%%DOCSDIR%%/manual/R-admin.pdf +%%PORTDOCS%%%%DOCSDIR%%/manual/R-data.pdf +%%PORTDOCS%%%%DOCSDIR%%/manual/R-exts.pdf +%%PORTDOCS%%%%DOCSDIR%%/manual/R-intro.pdf +%%PORTDOCS%%%%DOCSDIR%%/manual/R-ints.pdf +%%PORTDOCS%%%%DOCSDIR%%/manual/R-lang.pdf +%%PORTDOCS%%%%DOCSDIR%%/manual/fullrefman.pdf +%%DOCSDIR%%/BioC_mirrors.csv *** DIFF OUTPUT TRUNCATED AT 1000 LINES ***
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