From owner-freebsd-pkg-fallout@freebsd.org Sat May 26 08:33:54 2018 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 423BCF6DE1D for ; Sat, 26 May 2018 08:33:54 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id 8D01B87A48 for ; Sat, 26 May 2018 08:33:53 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id 4431AF6DE1C; Sat, 26 May 2018 08:33:53 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 1AD4BF6DE1B for ; Sat, 26 May 2018 08:33:53 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id B1DEF87A46; Sat, 26 May 2018 08:33:52 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy10.nyi.freebsd.org (beefy10.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:ed]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 788F25862; Sat, 26 May 2018 08:33:52 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy10.nyi.freebsd.org (localhost [127.0.0.1]) by beefy10.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id w4Q8Xq2E021382; Sat, 26 May 2018 08:33:52 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy10.nyi.freebsd.org (8.15.2/8.15.2/Submit) id w4Q8Xqo8021381; Sat, 26 May 2018 08:33:52 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Sat, 26 May 2018 08:33:52 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201805260833.w4Q8Xqo8021381@beefy10.nyi.freebsd.org> To: tota@FreeBSD.org Subject: [package - 111i386-default][devel/R-cran-data.table] Failed for R-cran-data.table-1.11.2 in stage Cc: pkg-fallout@FreeBSD.org X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.26 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 26 May 2018 08:33:54 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: tota@FreeBSD.org Last committer: tota@FreeBSD.org Ident: $FreeBSD: head/devel/R-cran-data.table/Makefile 470189 2018-05-17 02:18:52Z tota $ Log URL: http://beefy10.nyi.freebsd.org/data/111i386-default/470877/logs/R-cran-data.table-1.11.2.log Build URL: http://beefy10.nyi.freebsd.org/build.html?mastername=111i386-default&build=470877 Log: =>> Building devel/R-cran-data.table build started at Sat May 26 08:32:11 UTC 2018 port directory: /usr/ports/devel/R-cran-data.table package name: R-cran-data.table-1.11.2 building for: FreeBSD 111i386-default-job-16 11.1-RELEASE-p10 FreeBSD 11.1-RELEASE-p10 i386 maintained by: tota@FreeBSD.org Makefile ident: $FreeBSD: head/devel/R-cran-data.table/Makefile 470189 2018-05-17 02:18:52Z tota $ Poudriere version: 3.2.6-3-g832b198d Host OSVERSION: 1200062 Jail OSVERSION: 1101001 Job Id: 16 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1101001 UNAME_v=FreeBSD 11.1-RELEASE-p10 UNAME_r=11.1-RELEASE-p10 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.6-3-g832b198d MASTERMNT=/usr/local/poudriere/data/.m/111i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/111i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=111i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/111i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- tota@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/usr/ports/devel/R-cran-data.table/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/devel/R-cran-data.table/work HOME=/wrkdirs/usr/ports/devel/R-cran-data.table/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/devel/R-cran-data.table/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran6" FC="gfortran6" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc6" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc6" XDG_DATA_HOME=/wrkdirs/usr/ports/devel/R-cran-data.table/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/devel/R-cran-data.table/work HOME=/wrkdirs/usr/ports/devel/R-cran-data.table/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/devel/R-cran-data.table/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-alia sing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" R_MOD_DIR=lib/R/library/data.table OSREL=11.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/data.table" EXAMPLESDIR="share/examples/data.table" DATADIR="share/data.table" WWWDIR="www/data.table" ETCDIR="etc/data.table" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/data.table DOCSDIR=/usr/local/share/doc/data.table EXAMPLESDIR=/usr/local/share/examples/data.table WWWDIR=/usr/local/www/data.table ETCDIR=/usr/local/etc/data.table --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. 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It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 4.0.0 (tags/RELEASE_400/final 297347) (based on LLVM 4.0.0) Target: i386-unknown-freebsd11.1 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 4.0.0 (tags/RELEASE_400/final 297347) (based on LLVM 4.0.0) Target: i386-unknown-freebsd11.1 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 4.0.0 (tags/RELEASE_400/final 297347) (based on LLVM 4.0.0) Target: i386-unknown-freebsd11.1 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=11.1-RELEASE-p10 OSREL=11.1 OSVERSION=1101001 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License MPL20 accepted by the user =========================================================================== =================================================== ===> R-cran-data.table-1.11.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz [111i386-default-job-16] Installing pkg-1.10.5_1... [111i386-default-job-16] Extracting pkg-1.10.5_1: .......... done ===> R-cran-data.table-1.11.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-data.table-1.11.2 =========================================================================== =================================================== =========================================================================== =================================================== ===> License MPL20 accepted by the user ===> Fetching all distfiles required by R-cran-data.table-1.11.2 for building =========================================================================== =================================================== ===> License MPL20 accepted by the user ===> Fetching all distfiles required by R-cran-data.table-1.11.2 for building => SHA256 Checksum OK for data.table_1.11.2.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License MPL20 accepted by the user ===> Fetching all distfiles required by R-cran-data.table-1.11.2 for building ===> Extracting for R-cran-data.table-1.11.2 => SHA256 Checksum OK for data.table_1.11.2.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for R-cran-data.table-1.11.2 =========================================================================== =================================================== ===> R-cran-data.table-1.11.2 depends on file: /usr/local/bin/R - not found ===> Installing existing package /packages/All/R-3.5.0.txz [111i386-default-job-16] Installing R-3.5.0... [111i386-default-job-16] `-- Installing cairo-1.14.8_1,2... [111i386-default-job-16] | `-- Installing dri2proto-2.8... [111i386-default-job-16] | `-- Extracting dri2proto-2.8: ....... done [111i386-default-job-16] | `-- Installing fontconfig-2.12.6,1... [111i386-default-job-16] | | `-- Installing expat-2.2.5... [111i386-default-job-16] | | `-- Extracting expat-2.2.5: .......... done [111i386-default-job-16] | | `-- Installing freetype2-2.9.1... [111i386-default-job-16] | | `-- Extracting freetype2-2.9.1: .......... done [111i386-default-job-16] | `-- Extracting fontconfig-2.12.6,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded [111i386-default-job-16] | `-- Installing gettext-runtime-0.19.8.1_1... [111i386-default-job-16] | | `-- Installing indexinfo-0.3.1... Message from freetype2-2.9.1: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). Message from perl5-5.26.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. 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Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from gcc6-6.4.0_7: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc6 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from trousers-0.3.14_2: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from ghostscript9-agpl-base-9.16_5: Note: in order to use the script "dvipdf", dvips must be installed. This program is provided by another package print/tex-dvipsk. FAPIfontmap and FAPIcidfmap in /usr/local/share/ghostscript/9.16/Resource/Init have to be configured if you want to use FAPI feature. Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> R-cran-data.table-1.11.2 depends on file: /usr/local/bin/R - found ===> Returning to build of R-cran-data.table-1.11.2 ===> R-cran-data.table-1.11.2 depends on executable: gfortran6 - found ===> R-cran-data.table-1.11.2 depends on file: /usr/local/bin/as - found =========================================================================== =================================================== ===> R-cran-data.table-1.11.2 depends on shared library: libomp.so - found (/usr/local/lib/libomp.so) =========================================================================== =================================================== ===> Configuring for R-cran-data.table-1.11.2 =========================================================================== =================================================== =========================================================================== =================================================== ===> R-cran-data.table-1.11.2 depends on file: /usr/local/bin/R - found ===> R-cran-data.table-1.11.2 depends on executable: gfortran6 - found =========================================================================== =================================================== ===> Staging for R-cran-data.table-1.11.2 ===> Generating temporary packing list * installing *source* package 'data.table' ... ** package 'data.table' successfully unpacked and MD5 sums checked ** libs gmake[1]: Entering directory '/wrkdirs/usr/ports/devel/R-cran-data.table/work/data.table/src' cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c assign.c -o assign.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c between.c -o between.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c bmerge.c -o bmerge.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c chmatch.c -o chmatch.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c dogroups.c -o dogroups.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c fastmean.c -o fastmean.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c fcast.c -o fcast.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c fmelt.c -o fmelt.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c forder.c -o forder.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c frank.c -o frank.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c fread.c -o fread.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c freadR.c -o freadR.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c fsort.c -o fsort.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c fwrite.c -o fwrite.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c fwriteR.c -o fwriteR.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c gsumm.c -o gsumm.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c ijoin.c -o ijoin.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c init.c -o init.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c inrange.c -o inrange.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c nqrecreateindices.c -o nqrecreateindices.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c openmp-utils.c -o openmp-utils.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c quickselect.c -o quickselect.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c rbindlist.c -o rbindlist.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c reorder.c -o reorder.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c shift.c -o shift.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c subset.c -o subset.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c transpose.c -o transpose.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c uniqlist.c -o uniqlist.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c vecseq.c -o vecseq.o cc -I"/usr/local/lib/R/include" -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c wrappers.c -o wrappers.o cc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc6 -L/usr/local/lib/gcc6 -B/usr/local/bin -fstack-protector -o data.table.so assign.o between.o bmerge.o chmatch.o dogroups.o fastmean.o fcast.o fmelt.o forder.o frank.o fread.o freadR.o fsort.o fwrite.o fwriteR.o gsumm.o ijoin.o init.o inrange.o nqrecreateindices.o openmp-utils.o quickselect.o rbindlist.o reorder.o shift.o subset.o transpose.o uniqlist.o vecseq.o wrappers.o -fopenmp -L/usr/local/lib/R/lib -lR mv data.table.so datatable.so if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id datatable.so datatable.so; fi gmake[1]: Leaving directory '/wrkdirs/usr/ports/devel/R-cran-data.table/work/data.table/src' installing to /wrkdirs/usr/ports/devel/R-cran-data.table/work/stage/usr/local/lib/R/library/data.table/libs ** R ** inst ** tests ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Error: package or namespace load failed for 'data.table' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/wrkdirs/usr/ports/devel/R-cran-data.table/work/stage/usr/local/lib/R/library/data.table/libs/datatable.so': /wrkdirs/usr/ports/devel/R-cran-data.table/work/stage/usr/local/lib/R/library/data.table/libs/datatable.so: Undefined symbol "__atomic_load" Error: loading failed Execution halted ERROR: loading failed * removing '/wrkdirs/usr/ports/devel/R-cran-data.table/work/stage/usr/local/lib/R/library/data.table' *** Error code 1 Stop. make: stopped in /usr/ports/devel/R-cran-data.table